Wall clock time and date at job start Tue Mar 31 2020 05:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 110.39211 * 2 1 4 4 C 1.54565 * 110.44240 * 237.43801 * 2 1 3 5 5 C 1.54490 * 102.14891 * 268.10772 * 4 2 1 6 6 C 1.53001 * 110.36997 * 225.81634 * 5 4 2 7 7 N 1.46506 * 110.36430 * 103.49317 * 5 4 2 8 8 C 1.34780 * 119.99713 * 180.02562 * 7 5 4 9 9 O 1.21587 * 119.99955 * 359.97438 * 8 7 5 10 10 N 1.34773 * 119.99830 * 180.02562 * 8 7 5 11 11 C 1.46505 * 120.00063 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.47088 * 179.97438 * 11 10 8 13 13 C 1.50705 * 109.46797 * 180.02562 * 12 11 10 14 14 H 1.08001 * 119.99945 * 359.97438 * 13 12 11 15 15 C 1.37875 * 119.99755 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00086 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 119.99893 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.46649 * 60.00155 * 17 15 13 19 19 H 1.48501 * 109.47175 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47222 * 300.00108 * 17 15 13 21 21 C 1.51324 * 104.82493 * 344.65759 * 5 4 2 22 22 O 1.20824 * 125.09578 * 177.70409 * 21 5 4 23 23 O 1.34067 * 109.80999 * 357.68052 * 21 5 4 24 24 H 1.08996 * 109.47219 * 299.03439 * 1 2 3 25 25 H 1.09003 * 109.46904 * 59.03862 * 1 2 3 26 26 H 1.09001 * 109.46839 * 179.03728 * 1 2 3 27 27 H 1.09000 * 109.46889 * 180.96995 * 3 2 1 28 28 H 1.09005 * 109.46637 * 300.96494 * 3 2 1 29 29 H 1.08997 * 109.47425 * 60.96424 * 3 2 1 30 30 H 1.09005 * 110.86641 * 26.27611 * 4 2 1 31 31 H 1.09009 * 110.86782 * 149.73531 * 4 2 1 32 32 H 1.09001 * 109.46701 * 60.00010 * 6 5 4 33 33 H 1.09001 * 109.46788 * 180.02562 * 6 5 4 34 34 H 1.09002 * 109.47023 * 300.00173 * 6 5 4 35 35 H 0.97000 * 119.99947 * 359.97438 * 7 5 4 36 36 H 0.97001 * 120.00293 * 359.97438 * 10 8 7 37 37 H 1.09000 * 109.46863 * 299.99778 * 11 10 8 38 38 H 1.08997 * 109.46743 * 59.99309 * 11 10 8 39 39 H 1.09002 * 109.46805 * 299.99386 * 12 11 10 40 40 H 1.08992 * 109.47320 * 59.99803 * 12 11 10 41 41 H 0.97000 * 120.00195 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0632 1.4341 0.0000 4 6 2.0699 -0.7795 -1.2207 5 6 2.2302 -2.2063 -0.6503 6 6 3.5835 -2.7932 -1.0564 7 7 1.1396 -3.0668 -1.1157 8 6 1.0894 -4.3579 -0.7320 9 8 1.9495 -4.8085 -0.0001 10 7 0.0865 -5.1497 -1.1605 11 6 0.0322 -6.5532 -0.7439 12 6 -1.1957 -7.2223 -1.3648 13 6 -1.2518 -8.6659 -0.9357 14 1 -0.4878 -9.0662 -0.2857 15 6 -2.2784 -9.4756 -1.3731 16 7 -3.2084 -8.9884 -2.1651 17 14 -2.3476 -11.2652 -0.8419 18 1 -2.4384 -11.3389 0.6384 19 1 -3.5395 -11.9147 -1.4444 20 1 -1.1198 -11.9648 -1.2980 21 6 2.1603 -2.0331 0.8514 22 8 2.2071 -2.9321 1.6572 23 8 2.0393 -0.7326 1.1536 24 1 -0.3633 0.4987 0.8985 25 1 -0.3633 0.5287 -0.8813 26 1 -0.3633 -1.0275 -0.0173 27 1 3.1529 1.4166 -0.0174 28 1 1.6941 1.9589 -0.8813 29 1 1.7223 1.9485 0.8985 30 1 1.3497 -0.7670 -2.0388 31 1 3.0299 -0.3773 -1.5446 32 1 4.3839 -2.1634 -0.6680 33 1 3.6809 -3.7988 -0.6472 34 1 3.6496 -2.8357 -2.1436 35 1 0.4533 -2.7072 -1.6992 36 1 -0.5994 -4.7903 -1.7447 37 1 0.9340 -7.0665 -1.0780 38 1 -0.0352 -6.6073 0.3426 39 1 -2.0972 -6.7090 -1.0303 40 1 -1.1286 -7.1681 -2.4513 41 1 -3.9309 -9.5579 -2.4726 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123638726.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:20 Heat of formation + Delta-G solvation = -143.951572 kcal Electronic energy + Delta-G solvation = -23140.234664 eV Core-core repulsion = 19633.180673 eV Total energy + Delta-G solvation = -3507.053991 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.71942 -40.71072 -38.88589 -37.08227 -36.15738 -34.85303 -34.37643 -32.65744 -30.86544 -28.45958 -28.01556 -26.71157 -25.06312 -23.29438 -22.52943 -22.33769 -20.52309 -19.46030 -18.43018 -18.19947 -17.84164 -17.11331 -16.64792 -16.49355 -16.23606 -15.84204 -15.32904 -15.17234 -14.97159 -14.61441 -14.37599 -14.25098 -13.75692 -13.52169 -13.34865 -13.22200 -13.07295 -13.03114 -12.91552 -12.70191 -12.55084 -12.52047 -12.23762 -12.08203 -11.67145 -11.53482 -11.49107 -11.38318 -10.94415 -10.60111 -10.26894 -9.81108 -8.24648 -6.34734 0.82842 1.41030 1.43541 1.51354 1.75901 2.06321 2.20154 2.40776 2.85092 3.09991 3.10192 3.32439 3.49824 3.72722 3.91904 4.06809 4.45380 4.50821 4.54836 4.59039 4.64909 4.69527 4.77079 4.81813 4.85618 4.92274 4.93606 5.18343 5.19227 5.32046 5.32635 5.35762 5.53097 5.59070 5.77863 5.80306 5.98623 6.17129 6.45338 6.77653 7.09996 7.34366 7.62498 8.87052 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.034513 B = 0.003213 C = 0.003128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.091826 B = 8711.960098 C = 8948.252522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.092 3.908 3 C -0.139 4.139 4 C -0.133 4.133 5 C 0.141 3.859 6 C -0.156 4.156 7 N -0.716 5.716 8 C 0.689 3.311 9 O -0.607 6.607 10 N -0.731 5.731 11 C 0.163 3.837 12 C 0.027 3.973 13 C -0.550 4.550 14 H 0.056 0.944 15 C 0.009 3.991 16 N -0.925 5.925 17 Si 0.964 3.036 18 H -0.271 1.271 19 H -0.278 1.278 20 H -0.268 1.268 21 C 0.462 3.538 22 O -0.476 6.476 23 O -0.361 6.361 24 H 0.065 0.935 25 H 0.120 0.880 26 H 0.044 0.956 27 H 0.073 0.927 28 H 0.116 0.884 29 H 0.065 0.935 30 H 0.140 0.860 31 H 0.137 0.863 32 H 0.084 0.916 33 H 0.049 0.951 34 H 0.097 0.903 35 H 0.418 0.582 36 H 0.407 0.593 37 H 0.044 0.956 38 H 0.034 0.966 39 H 0.008 0.992 40 H 0.013 0.987 41 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.805 26.030 -4.302 27.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.056 3.944 3 C -0.196 4.196 4 C -0.170 4.170 5 C 0.051 3.949 6 C -0.213 4.213 7 N -0.378 5.378 8 C 0.389 3.611 9 O -0.486 6.486 10 N -0.387 5.387 11 C 0.038 3.962 12 C -0.010 4.010 13 C -0.588 4.588 14 H 0.074 0.926 15 C -0.190 4.190 16 N -0.564 5.564 17 Si 0.788 3.212 18 H -0.196 1.196 19 H -0.203 1.203 20 H -0.193 1.193 21 C 0.300 3.700 22 O -0.358 6.358 23 O -0.278 6.278 24 H 0.084 0.916 25 H 0.138 0.862 26 H 0.063 0.937 27 H 0.092 0.908 28 H 0.134 0.866 29 H 0.084 0.916 30 H 0.158 0.842 31 H 0.155 0.845 32 H 0.103 0.897 33 H 0.068 0.932 34 H 0.116 0.884 35 H 0.258 0.742 36 H 0.243 0.757 37 H 0.062 0.938 38 H 0.052 0.948 39 H 0.026 0.974 40 H 0.031 0.969 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 9.491 25.248 -3.130 27.154 hybrid contribution -0.911 -1.164 0.158 1.487 sum 8.580 24.083 -2.972 25.738 Atomic orbital electron populations 1.22372 0.92138 1.02805 1.05415 1.23591 0.95315 0.94132 0.81328 1.21943 1.02517 0.90205 1.04919 1.23553 1.07258 0.87956 0.98271 1.21500 0.90180 0.93351 0.89823 1.22125 0.93304 1.02169 1.03743 1.44864 1.30082 1.07844 1.55000 1.16301 0.82431 0.81886 0.80483 1.90949 1.41406 1.74912 1.41309 1.45172 1.28211 1.11337 1.53961 1.21032 0.98928 0.78683 0.97534 1.19099 0.91826 0.94505 0.95613 1.21439 1.10308 0.96437 1.30615 0.92596 1.25836 0.94938 1.03367 0.94814 1.70039 1.13646 1.38008 1.34740 0.85523 0.77882 0.79083 0.78715 1.19606 1.20310 1.19311 1.24063 0.71808 0.81592 0.92572 1.90778 1.44141 1.42456 1.58447 1.87095 1.77033 1.20312 1.43407 0.91575 0.86159 0.93687 0.90754 0.86569 0.91621 0.84241 0.84537 0.89733 0.93221 0.88426 0.74247 0.75734 0.93768 0.94763 0.97411 0.96888 0.92470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.84 8.77 71.98 0.63 -1.21 16 2 C 0.09 1.12 1.24 -10.26 -0.01 1.11 16 3 C -0.14 -0.81 8.91 71.98 0.64 -0.17 16 4 C -0.13 -1.15 5.53 31.63 0.17 -0.97 16 5 C 0.14 3.03 0.96 3.56 0.00 3.03 16 6 C -0.16 -3.45 8.37 71.98 0.60 -2.85 16 7 N -0.72 -16.86 5.15 -438.18 -2.26 -19.12 16 8 C 0.69 24.82 7.98 179.05 1.43 26.25 16 9 O -0.61 -27.96 12.25 16.73 0.20 -27.76 16 10 N -0.73 -26.45 5.56 -478.53 -2.66 -29.11 16 11 C 0.16 7.41 5.61 86.38 0.48 7.90 16 12 C 0.03 1.40 5.09 29.85 0.15 1.55 16 13 C -0.55 -31.51 9.11 25.60 0.23 -31.28 16 14 H 0.06 3.17 7.74 -2.91 -0.02 3.14 16 15 C 0.01 0.53 5.46 84.65 0.46 1.00 16 16 N -0.92 -54.52 13.29 21.45 0.28 -54.24 16 17 Si 0.96 44.41 29.54 68.60 2.03 46.44 16 18 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 19 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 20 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 21 C 0.46 14.42 7.14 71.43 0.51 14.93 16 22 O -0.48 -20.83 15.79 28.75 0.45 -20.38 16 23 O -0.36 -8.94 10.48 -50.19 -0.53 -9.46 16 24 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 25 H 0.12 0.38 8.14 -2.39 -0.02 0.36 16 26 H 0.04 0.69 8.08 -2.39 -0.02 0.67 16 27 H 0.07 0.41 8.13 -2.39 -0.02 0.39 16 28 H 0.12 -0.06 8.14 -2.38 -0.02 -0.08 16 29 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.14 0.29 7.42 -2.38 -0.02 0.27 16 31 H 0.14 0.47 7.60 -2.38 -0.02 0.45 16 32 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.05 1.63 6.02 -2.39 -0.01 1.62 16 34 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.42 6.21 8.21 -92.71 -0.76 5.45 16 36 H 0.41 12.02 8.49 -92.71 -0.79 11.24 16 37 H 0.04 2.09 8.14 -2.39 -0.02 2.07 16 38 H 0.03 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 40 H 0.01 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.27 14.75 8.31 -92.71 -0.77 13.98 16 Total: -1.00 -84.46 338.96 2.33 -82.12 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -0.50 Total: 12.22 kcal Atomic # 6 Polarization: 13.97 SS G_CDS: 5.31 Total: 19.28 kcal Atomic # 7 Polarization: -97.83 SS G_CDS: -4.63 Total: -102.46 kcal Atomic # 8 Polarization: -57.73 SS G_CDS: 0.13 Total: -57.60 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -84.46 2.33 -82.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123638726.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.831 kcal (2) G-P(sol) polarization free energy of solvation -84.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds