Wall clock time and date at job start Tue Mar 31 2020 05:42:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47311 * 2 1 4 4 C 1.53006 * 109.47039 * 240.00255 * 2 1 3 5 5 O 1.45199 * 109.47417 * 120.00428 * 2 1 3 6 6 C 1.34640 * 117.00304 * 59.99665 * 5 2 1 7 7 O 1.21518 * 119.99805 * 0.02562 * 6 5 2 8 8 N 1.34770 * 120.00286 * 180.02562 * 6 5 2 9 9 C 1.47606 * 126.48064 * 359.97090 * 8 6 5 10 10 C 1.53894 * 106.19284 * 179.21052 * 9 8 6 11 11 N 1.47595 * 104.90915 * 342.62978 * 10 9 8 12 12 C 1.34771 * 127.39206 * 208.74905 * 11 10 9 13 13 O 1.21275 * 120.00538 * 0.02562 * 12 11 10 14 14 C 1.50703 * 119.99616 * 180.02562 * 12 11 10 15 15 C 1.50698 * 109.46972 * 180.02562 * 14 12 11 16 16 H 1.07998 * 120.00237 * 359.97438 * 15 14 12 17 17 C 1.37885 * 119.99643 * 179.97438 * 15 14 12 18 18 N 1.31512 * 120.00336 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99773 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.47068 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47280 * 119.99939 * 19 17 15 22 22 H 1.48500 * 109.47384 * 240.00116 * 19 17 15 23 23 C 1.46958 * 126.25282 * 180.02562 * 8 6 5 24 24 H 1.09008 * 109.46515 * 299.99500 * 1 2 3 25 25 H 1.08990 * 109.47277 * 59.99205 * 1 2 3 26 26 H 1.08998 * 109.46974 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47263 * 179.97438 * 3 2 1 28 28 H 1.08990 * 109.47407 * 300.00079 * 3 2 1 29 29 H 1.08999 * 109.46893 * 60.00970 * 3 2 1 30 30 H 1.09005 * 109.47002 * 300.00088 * 4 2 1 31 31 H 1.08995 * 109.46726 * 59.99654 * 4 2 1 32 32 H 1.08997 * 109.47315 * 180.02562 * 4 2 1 33 33 H 1.08993 * 110.06436 * 60.04169 * 9 8 6 34 34 H 1.08998 * 110.17617 * 298.43521 * 9 8 6 35 35 H 1.09001 * 110.34987 * 223.77622 * 10 9 8 36 36 H 1.08998 * 110.44520 * 101.53843 * 10 9 8 37 37 H 1.09008 * 109.46771 * 300.00017 * 14 12 11 38 38 H 1.08993 * 109.47147 * 59.99685 * 14 12 11 39 39 H 0.97000 * 120.00139 * 180.02562 * 18 17 15 40 40 H 1.09002 * 109.90912 * 79.48497 * 23 8 6 41 41 H 1.09005 * 109.90573 * 318.41371 * 23 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0140 -0.6846 1.1855 6 6 1.6523 -1.9724 1.3383 7 8 0.9516 -2.5098 0.5035 8 7 2.0673 -2.6655 2.4170 9 6 2.9173 -2.1586 3.5121 10 6 3.0845 -3.3258 4.5010 11 7 2.0051 -4.2721 4.1576 12 6 1.3813 -5.1364 4.9824 13 8 1.6955 -5.1923 6.1524 14 6 0.2934 -6.0335 4.4506 15 6 -0.2369 -6.8959 5.5668 16 1 0.1732 -6.8040 6.5617 17 6 -1.2457 -7.8024 5.3179 18 7 -1.7454 -7.9140 4.1066 19 14 -1.9025 -8.8719 6.7014 20 1 -1.1784 -8.5549 7.9586 21 1 -3.3522 -8.6079 6.8857 22 1 -1.6994 -10.3028 6.3600 23 6 1.7569 -4.0697 2.7199 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8898 26 1 -0.3633 -1.0277 0.0005 27 1 3.1301 1.4425 0.0005 28 1 1.6767 1.9563 -0.8899 29 1 1.6768 1.9562 0.8901 30 1 1.6766 -1.7489 -1.2494 31 1 1.6766 -0.2074 -2.1392 32 1 3.1299 -0.7217 -1.2491 33 1 2.4303 -1.3170 4.0045 34 1 3.8891 -1.8543 3.1236 35 1 2.9681 -2.9738 5.5261 36 1 4.0582 -3.7982 4.3714 37 1 -0.5153 -5.4239 4.0473 38 1 0.6984 -6.6676 3.6620 39 1 -2.4553 -8.5514 3.9316 40 1 2.4013 -4.7266 2.1356 41 1 0.7114 -4.2763 2.4912 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143198646.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:50 Heat of formation + Delta-G solvation = -100.718964 kcal Electronic energy + Delta-G solvation = -22970.619839 eV Core-core repulsion = 19465.440554 eV Total energy + Delta-G solvation = -3505.179285 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.92533 -39.51006 -37.66037 -36.45473 -34.28998 -32.99709 -32.73941 -30.37536 -28.58240 -27.61541 -27.53734 -26.01663 -24.03561 -22.44418 -21.85966 -19.63701 -19.13800 -17.80716 -16.94393 -16.63292 -16.40096 -15.78484 -15.61655 -15.14726 -14.75011 -14.48296 -14.22827 -13.97970 -13.82159 -13.23100 -13.05303 -12.71930 -12.47903 -12.34686 -12.29877 -12.11279 -12.06999 -11.99343 -11.81999 -11.53999 -11.43134 -11.22390 -10.77864 -10.68575 -10.51466 -10.13630 -9.99901 -9.29675 -9.01841 -8.88354 -8.47574 -8.40711 -6.08279 -4.09066 1.83011 2.75400 3.32635 3.33123 3.40200 3.47187 3.49376 3.78141 4.45369 4.51424 4.55644 4.56464 4.70718 4.88731 4.95527 5.25172 5.29495 5.30861 5.34103 5.48402 5.49365 5.55012 5.56288 5.63527 5.68264 5.76715 5.78391 5.88487 5.99280 6.12970 6.18964 6.32780 6.61384 7.11773 7.24841 7.29838 7.86679 7.93546 8.22477 8.27459 8.96319 9.02632 9.56159 11.03834 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.026111 B = 0.003602 C = 0.003297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.099551 B = 7770.934920 C = 8490.910819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.135 3.865 3 C -0.139 4.139 4 C -0.184 4.184 5 O -0.361 6.361 6 C 0.678 3.322 7 O -0.559 6.559 8 N -0.614 5.614 9 C 0.097 3.903 10 C 0.092 3.908 11 N -0.641 5.641 12 C 0.544 3.456 13 O -0.530 6.530 14 C 0.009 3.991 15 C -0.512 4.512 16 H 0.076 0.924 17 C 0.056 3.944 18 N -0.897 5.897 19 Si 0.902 3.098 20 H -0.270 1.270 21 H -0.284 1.284 22 H -0.283 1.283 23 C 0.354 3.646 24 H 0.060 0.940 25 H 0.070 0.930 26 H 0.090 0.910 27 H 0.066 0.934 28 H 0.080 0.920 29 H 0.066 0.934 30 H 0.089 0.911 31 H 0.070 0.930 32 H 0.059 0.941 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.092 0.908 36 H 0.074 0.926 37 H 0.051 0.949 38 H 0.052 0.948 39 H 0.262 0.738 40 H 0.080 0.920 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.587 17.813 -10.025 22.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.099 3.901 3 C -0.197 4.197 4 C -0.241 4.241 5 O -0.276 6.276 6 C 0.433 3.567 7 O -0.447 6.447 8 N -0.357 5.357 9 C -0.027 4.027 10 C -0.031 4.031 11 N -0.382 5.382 12 C 0.337 3.663 13 O -0.404 6.404 14 C -0.030 4.030 15 C -0.550 4.550 16 H 0.094 0.906 17 C -0.145 4.145 18 N -0.537 5.537 19 Si 0.730 3.270 20 H -0.195 1.195 21 H -0.210 1.210 22 H -0.209 1.209 23 C 0.146 3.854 24 H 0.079 0.921 25 H 0.089 0.911 26 H 0.108 0.892 27 H 0.085 0.915 28 H 0.099 0.901 29 H 0.085 0.915 30 H 0.108 0.892 31 H 0.089 0.911 32 H 0.078 0.922 33 H 0.096 0.904 34 H 0.100 0.900 35 H 0.110 0.890 36 H 0.092 0.908 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.098 0.902 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 9.296 17.522 -9.758 22.106 hybrid contribution -0.366 -0.413 0.504 0.747 sum 8.930 17.110 -9.254 21.404 Atomic orbital electron populations 1.22531 0.93853 1.05367 1.02473 1.22093 0.94525 0.91427 0.82078 1.21849 1.02154 0.92543 1.03106 1.22525 1.01473 1.03697 0.96399 1.86298 1.71580 1.23246 1.46465 1.17168 0.78409 0.80305 0.80853 1.90947 1.40789 1.70411 1.42572 1.47309 1.53395 1.13238 1.21803 1.22423 0.95309 0.97482 0.87475 1.22294 0.92245 0.88976 0.99627 1.49305 1.38695 1.40594 1.09561 1.21942 0.81468 0.78036 0.84809 1.90572 1.64907 1.68089 1.16827 1.19310 0.91011 0.93717 0.98920 1.21174 1.18736 1.19217 0.95917 0.90569 1.25011 0.96366 0.97210 0.95927 1.69967 1.27301 1.36481 1.19923 0.86361 0.78561 0.79872 0.82255 1.19453 1.20968 1.20941 1.21394 1.02741 0.78934 0.82312 0.92123 0.91123 0.89158 0.91525 0.90141 0.91480 0.89206 0.91140 0.92211 0.90441 0.89959 0.88952 0.90783 0.93152 0.93049 0.92818 0.90211 0.88465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.95 8.37 37.16 0.31 -1.64 16 2 C 0.14 1.39 1.13 -90.62 -0.10 1.29 16 3 C -0.14 -1.00 8.85 37.16 0.33 -0.68 16 4 C -0.18 -1.81 8.37 37.16 0.31 -1.49 16 5 O -0.36 -4.54 9.54 -40.32 -0.38 -4.92 16 6 C 0.68 9.95 7.95 54.05 0.43 10.38 16 7 O -0.56 -9.36 12.23 -19.29 -0.24 -9.60 16 8 N -0.61 -8.65 3.37 -180.95 -0.61 -9.26 16 9 C 0.10 1.09 7.18 -2.97 -0.02 1.07 16 10 C 0.09 1.22 7.09 -2.98 -0.02 1.20 16 11 N -0.64 -11.28 3.37 -175.05 -0.59 -11.87 16 12 C 0.54 12.32 7.89 -10.99 -0.09 12.24 16 13 O -0.53 -13.55 15.80 5.56 0.09 -13.46 16 14 C 0.01 0.24 4.50 -29.03 -0.13 0.11 16 15 C -0.51 -14.74 8.92 -34.44 -0.31 -15.05 16 16 H 0.08 2.28 6.75 -52.49 -0.35 1.93 16 17 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 18 N -0.90 -26.27 13.29 55.43 0.74 -25.53 16 19 Si 0.90 22.01 29.54 -169.99 -5.02 16.99 16 20 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 23 C 0.35 5.55 6.93 -62.38 -0.43 5.12 16 24 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16 25 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.09 1.21 5.88 -51.93 -0.31 0.90 16 27 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.09 1.12 5.88 -51.93 -0.31 0.81 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.09 1.25 8.04 -51.93 -0.42 0.83 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.05 1.31 7.91 -51.92 -0.41 0.90 16 38 H 0.05 1.31 8.14 -51.93 -0.42 0.89 16 39 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 40 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.10 1.69 7.40 -51.93 -0.38 1.31 16 LS Contribution 338.96 15.07 5.11 5.11 Total: -1.00 -33.29 338.96 -7.11 -40.40 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: -6.39 Total: -1.91 kcal Atomic # 6 Polarization: 13.87 SS G_CDS: 0.18 Total: 14.05 kcal Atomic # 7 Polarization: -46.20 SS G_CDS: -0.46 Total: -46.66 kcal Atomic # 8 Polarization: -27.45 SS G_CDS: -0.53 Total: -27.98 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.29 -7.11 -40.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143198646.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.319 kcal (2) G-P(sol) polarization free energy of solvation -33.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds