Wall clock time and date at job start Tue Mar 31 2020 05:42:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47311 * 2 1 4 4 C 1.53006 * 109.47039 * 240.00255 * 2 1 3 5 5 O 1.45199 * 109.47417 * 120.00428 * 2 1 3 6 6 C 1.34640 * 117.00304 * 59.99665 * 5 2 1 7 7 O 1.21518 * 119.99805 * 0.02562 * 6 5 2 8 8 N 1.34770 * 120.00286 * 180.02562 * 6 5 2 9 9 C 1.47606 * 126.48064 * 359.97090 * 8 6 5 10 10 C 1.53894 * 106.19284 * 179.21052 * 9 8 6 11 11 N 1.47595 * 104.90915 * 342.62978 * 10 9 8 12 12 C 1.34771 * 127.39206 * 208.74905 * 11 10 9 13 13 O 1.21275 * 120.00538 * 0.02562 * 12 11 10 14 14 C 1.50703 * 119.99616 * 180.02562 * 12 11 10 15 15 C 1.50698 * 109.46972 * 180.02562 * 14 12 11 16 16 H 1.07998 * 120.00237 * 359.97438 * 15 14 12 17 17 C 1.37885 * 119.99643 * 179.97438 * 15 14 12 18 18 N 1.31512 * 120.00336 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99773 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.47068 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47280 * 119.99939 * 19 17 15 22 22 H 1.48500 * 109.47384 * 240.00116 * 19 17 15 23 23 C 1.46958 * 126.25282 * 180.02562 * 8 6 5 24 24 H 1.09008 * 109.46515 * 299.99500 * 1 2 3 25 25 H 1.08990 * 109.47277 * 59.99205 * 1 2 3 26 26 H 1.08998 * 109.46974 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47263 * 179.97438 * 3 2 1 28 28 H 1.08990 * 109.47407 * 300.00079 * 3 2 1 29 29 H 1.08999 * 109.46893 * 60.00970 * 3 2 1 30 30 H 1.09005 * 109.47002 * 300.00088 * 4 2 1 31 31 H 1.08995 * 109.46726 * 59.99654 * 4 2 1 32 32 H 1.08997 * 109.47315 * 180.02562 * 4 2 1 33 33 H 1.08993 * 110.06436 * 60.04169 * 9 8 6 34 34 H 1.08998 * 110.17617 * 298.43521 * 9 8 6 35 35 H 1.09001 * 110.34987 * 223.77622 * 10 9 8 36 36 H 1.08998 * 110.44520 * 101.53843 * 10 9 8 37 37 H 1.09008 * 109.46771 * 300.00017 * 14 12 11 38 38 H 1.08993 * 109.47147 * 59.99685 * 14 12 11 39 39 H 0.97000 * 120.00139 * 180.02562 * 18 17 15 40 40 H 1.09002 * 109.90912 * 79.48497 * 23 8 6 41 41 H 1.09005 * 109.90573 * 318.41371 * 23 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0140 -0.6846 1.1855 6 6 1.6523 -1.9724 1.3383 7 8 0.9516 -2.5098 0.5035 8 7 2.0673 -2.6655 2.4170 9 6 2.9173 -2.1586 3.5121 10 6 3.0845 -3.3258 4.5010 11 7 2.0051 -4.2721 4.1576 12 6 1.3813 -5.1364 4.9824 13 8 1.6955 -5.1923 6.1524 14 6 0.2934 -6.0335 4.4506 15 6 -0.2369 -6.8959 5.5668 16 1 0.1732 -6.8040 6.5617 17 6 -1.2457 -7.8024 5.3179 18 7 -1.7454 -7.9140 4.1066 19 14 -1.9025 -8.8719 6.7014 20 1 -1.1784 -8.5549 7.9586 21 1 -3.3522 -8.6079 6.8857 22 1 -1.6994 -10.3028 6.3600 23 6 1.7569 -4.0697 2.7199 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8898 26 1 -0.3633 -1.0277 0.0005 27 1 3.1301 1.4425 0.0005 28 1 1.6767 1.9563 -0.8899 29 1 1.6768 1.9562 0.8901 30 1 1.6766 -1.7489 -1.2494 31 1 1.6766 -0.2074 -2.1392 32 1 3.1299 -0.7217 -1.2491 33 1 2.4303 -1.3170 4.0045 34 1 3.8891 -1.8543 3.1236 35 1 2.9681 -2.9738 5.5261 36 1 4.0582 -3.7982 4.3714 37 1 -0.5153 -5.4239 4.0473 38 1 0.6984 -6.6676 3.6620 39 1 -2.4553 -8.5514 3.9316 40 1 2.4013 -4.7266 2.1356 41 1 0.7114 -4.2763 2.4912 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143198646.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:49 Heat of formation + Delta-G solvation = -122.513386 kcal Electronic energy + Delta-G solvation = -22971.564916 eV Core-core repulsion = 19465.440554 eV Total energy + Delta-G solvation = -3506.124362 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.02338 -40.91334 -39.08682 -37.64781 -35.26953 -35.15603 -34.02293 -31.83006 -30.34351 -28.34160 -28.26071 -27.42130 -25.81804 -23.86933 -22.85927 -20.86638 -20.41907 -19.10655 -18.47438 -18.07729 -17.59847 -17.45691 -16.83016 -16.73843 -16.04878 -15.87513 -15.59755 -15.18099 -14.85629 -14.53109 -14.28149 -14.23052 -13.81025 -13.47510 -13.33030 -13.16583 -13.12815 -12.89350 -12.87703 -12.84139 -12.78069 -12.61260 -12.42517 -12.30286 -12.06981 -11.45821 -11.40102 -11.18734 -10.76583 -10.65561 -10.16210 -9.82436 -8.27233 -6.36107 0.70499 1.40068 1.40608 1.55495 1.62035 1.68739 1.95743 2.42059 2.78717 3.08066 3.44659 3.66778 3.77275 3.81740 3.96778 4.02241 4.11830 4.31702 4.39463 4.50036 4.63089 4.64811 4.73809 4.79443 4.82180 4.84114 4.87762 4.91377 4.97666 5.15414 5.17375 5.27270 5.31341 5.36362 5.42566 5.70789 5.94919 6.14577 6.45507 6.77252 7.11428 7.20591 7.34668 8.85091 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.026111 B = 0.003602 C = 0.003297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.099551 B = 7770.934920 C = 8490.910819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.123 3.877 3 C -0.133 4.133 4 C -0.180 4.180 5 O -0.357 6.357 6 C 0.676 3.324 7 O -0.585 6.585 8 N -0.616 5.616 9 C 0.103 3.897 10 C 0.090 3.910 11 N -0.637 5.637 12 C 0.551 3.449 13 O -0.565 6.565 14 C 0.013 3.987 15 C -0.538 4.538 16 H 0.059 0.941 17 C 0.010 3.990 18 N -0.924 5.924 19 Si 0.968 3.032 20 H -0.272 1.272 21 H -0.274 1.274 22 H -0.271 1.271 23 C 0.356 3.644 24 H 0.059 0.941 25 H 0.094 0.906 26 H 0.056 0.944 27 H 0.074 0.926 28 H 0.103 0.897 29 H 0.068 0.932 30 H 0.058 0.942 31 H 0.092 0.908 32 H 0.067 0.933 33 H 0.086 0.914 34 H 0.118 0.882 35 H 0.091 0.909 36 H 0.099 0.901 37 H 0.036 0.964 38 H 0.045 0.955 39 H 0.268 0.732 40 H 0.099 0.901 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.745 19.426 -10.426 24.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.087 3.913 3 C -0.190 4.190 4 C -0.237 4.237 5 O -0.272 6.272 6 C 0.432 3.568 7 O -0.476 6.476 8 N -0.360 5.360 9 C -0.019 4.019 10 C -0.032 4.032 11 N -0.375 5.375 12 C 0.343 3.657 13 O -0.443 6.443 14 C -0.026 4.026 15 C -0.576 4.576 16 H 0.078 0.922 17 C -0.189 4.189 18 N -0.564 5.564 19 Si 0.792 3.208 20 H -0.196 1.196 21 H -0.199 1.199 22 H -0.197 1.197 23 C 0.149 3.851 24 H 0.078 0.922 25 H 0.113 0.887 26 H 0.075 0.925 27 H 0.093 0.907 28 H 0.122 0.878 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.111 0.889 32 H 0.086 0.914 33 H 0.105 0.895 34 H 0.136 0.864 35 H 0.109 0.891 36 H 0.117 0.883 37 H 0.054 0.946 38 H 0.063 0.937 39 H 0.077 0.923 40 H 0.117 0.883 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 10.486 19.193 -10.200 24.133 hybrid contribution -0.712 -0.821 0.522 1.206 sum 9.774 18.372 -9.678 22.951 Atomic orbital electron populations 1.22504 0.94406 1.03470 1.03662 1.22513 0.94357 0.92962 0.81428 1.21873 1.02655 0.90068 1.04364 1.22480 1.01900 1.02077 0.97243 1.86317 1.71381 1.21808 1.47652 1.17282 0.78048 0.80920 0.80569 1.90948 1.41883 1.71143 1.43599 1.47259 1.53731 1.12592 1.22406 1.22589 0.96643 0.96503 0.86133 1.22632 0.91602 0.88687 1.00316 1.48927 1.38754 1.39872 1.09949 1.21117 0.81318 0.78760 0.84525 1.90544 1.66081 1.69564 1.18074 1.19087 0.91804 0.93837 0.97853 1.21382 1.19607 1.20560 0.96088 0.92249 1.25836 0.96351 0.98284 0.98430 1.70052 1.27669 1.37092 1.21577 0.85356 0.78110 0.78382 0.78960 1.19631 1.19887 1.19667 1.21333 1.01926 0.80652 0.81237 0.92165 0.88733 0.92488 0.90728 0.87811 0.91298 0.92279 0.88902 0.91424 0.89542 0.86425 0.89055 0.88294 0.94563 0.93748 0.92316 0.88345 0.90897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.69 8.37 71.98 0.60 -3.09 16 2 C 0.12 2.30 1.13 -10.79 -0.01 2.29 16 3 C -0.13 -1.49 8.85 71.98 0.64 -0.85 16 4 C -0.18 -3.25 8.37 71.98 0.60 -2.65 16 5 O -0.36 -8.40 9.54 -55.49 -0.53 -8.93 16 6 C 0.68 19.47 7.95 129.79 1.03 20.50 16 7 O -0.59 -20.05 12.23 19.78 0.24 -19.80 16 8 N -0.62 -16.67 3.37 -956.81 -3.22 -19.89 16 9 C 0.10 2.06 7.18 86.47 0.62 2.68 16 10 C 0.09 2.21 7.09 86.47 0.61 2.82 16 11 N -0.64 -22.28 3.37 -826.13 -2.78 -25.06 16 12 C 0.55 25.52 7.89 87.66 0.69 26.21 16 13 O -0.57 -29.48 15.80 -3.01 -0.05 -29.53 16 14 C 0.01 0.71 4.50 29.10 0.13 0.84 16 15 C -0.54 -31.89 8.92 25.60 0.23 -31.67 16 16 H 0.06 3.67 6.75 -2.91 -0.02 3.65 16 17 C 0.01 0.57 5.46 84.66 0.46 1.03 16 18 N -0.92 -54.88 13.29 21.45 0.28 -54.59 16 19 Si 0.97 45.46 29.54 68.60 2.03 47.49 16 20 H -0.27 -12.74 7.11 99.48 0.71 -12.04 16 21 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 22 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 23 C 0.36 11.17 6.93 170.48 1.18 12.36 16 24 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 25 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.06 1.56 5.88 -2.39 -0.01 1.54 16 27 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 28 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.06 1.47 5.88 -2.38 -0.01 1.45 16 31 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.09 2.33 8.04 -2.39 -0.02 2.31 16 36 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.04 1.99 7.91 -2.38 -0.02 1.97 16 38 H 0.04 2.36 8.14 -2.39 -0.02 2.34 16 39 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 40 H 0.10 2.77 8.14 -2.39 -0.02 2.75 16 41 H 0.07 2.66 7.40 -2.38 -0.02 2.64 16 Total: -1.00 -73.86 338.96 3.78 -70.08 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: 1.01 Total: 9.76 kcal Atomic # 6 Polarization: 23.69 SS G_CDS: 6.79 Total: 30.48 kcal Atomic # 7 Polarization: -93.83 SS G_CDS: -5.72 Total: -99.55 kcal Atomic # 8 Polarization: -57.92 SS G_CDS: -0.33 Total: -58.26 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Total: -73.86 3.78 -70.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143198646.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.438 kcal (2) G-P(sol) polarization free energy of solvation -73.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds