Wall clock time and date at job start Tue Mar 31 2020 06:11:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46502 * 109.47400 * 2 1 4 4 C 1.36937 * 119.99869 * 275.70647 * 3 2 1 5 5 H 1.07999 * 120.00125 * 33.29280 * 4 3 2 6 6 C 1.38811 * 120.00233 * 213.29765 * 4 3 2 7 7 N 1.31618 * 119.99554 * 17.34689 * 6 4 3 8 8 Si 1.86796 * 120.00379 * 197.34996 * 6 4 3 9 9 H 1.48495 * 109.47347 * 59.99550 * 8 6 4 10 10 H 1.48503 * 109.47145 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.46992 * 299.99945 * 8 6 4 12 12 C 1.46496 * 120.00060 * 95.70364 * 3 2 1 13 13 H 1.09006 * 109.47240 * 179.97438 * 12 3 2 14 14 C 1.52994 * 109.47401 * 59.96220 * 12 3 2 15 15 C 1.53001 * 109.47001 * 299.96118 * 12 3 2 16 16 N 1.46502 * 109.47139 * 305.00051 * 15 12 3 17 17 C 1.34782 * 119.99770 * 179.97438 * 16 15 12 18 18 O 1.21736 * 119.99788 * 0.02562 * 17 16 15 19 19 C 1.46378 * 119.99927 * 180.02562 * 17 16 15 20 20 C 1.33971 * 119.23095 * 359.72598 * 19 17 16 21 21 O 1.34999 * 121.68745 * 180.12578 * 20 19 17 22 22 C 1.43246 * 116.82851 * 343.31094 * 21 20 19 23 23 C 1.53557 * 108.08333 * 45.25749 * 22 21 20 24 24 O 1.36212 * 119.23132 * 179.97438 * 19 17 16 25 25 H 1.09002 * 109.47419 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47308 * 300.00092 * 1 2 3 27 27 H 1.09002 * 109.47132 * 59.99870 * 1 2 3 28 28 H 1.09004 * 109.47308 * 239.99908 * 2 1 3 29 29 H 1.08998 * 109.47388 * 119.99693 * 2 1 3 30 30 H 0.97007 * 120.00142 * 180.02562 * 7 6 4 31 31 H 1.08996 * 109.47430 * 300.00576 * 14 12 3 32 32 H 1.09008 * 109.46774 * 60.00174 * 14 12 3 33 33 H 1.08999 * 109.47394 * 179.97438 * 14 12 3 34 34 H 1.08994 * 109.46963 * 65.00167 * 15 12 3 35 35 H 1.09000 * 109.47171 * 185.00099 * 15 12 3 36 36 H 0.96996 * 120.00415 * 0.02562 * 16 15 12 37 37 H 1.08005 * 119.15460 * 0.39645 * 20 19 17 38 38 H 1.08998 * 109.74090 * 285.61004 * 22 21 20 39 39 H 1.08997 * 109.73799 * 164.90699 * 22 21 20 40 40 H 1.08995 * 109.75023 * 182.21274 * 23 22 21 41 41 H 1.09004 * 109.75152 * 61.47553 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1354 2.0660 -1.1800 5 1 1.4376 1.8810 -1.9833 6 6 3.1511 2.9979 -1.3439 7 7 4.1886 2.9897 -0.5342 8 14 3.0452 4.2637 -2.7136 9 1 1.8257 5.0908 -2.5301 10 1 4.2462 5.1363 -2.6750 11 1 2.9801 3.5698 -4.0249 12 6 2.3814 2.0298 1.2624 13 1 2.7205 3.0466 1.0642 14 6 3.5046 1.2399 1.9371 15 6 1.1611 2.0700 2.1845 16 7 0.0470 2.7222 1.4919 17 6 -1.1392 2.8705 2.1145 18 8 -1.2846 2.4630 3.2523 19 6 -2.2526 3.5217 1.4223 20 6 -2.0738 3.9693 0.1723 21 8 -3.0655 4.5793 -0.5111 22 6 -4.3965 4.4073 -0.0103 23 6 -4.3635 4.6123 1.5112 24 8 -3.4447 3.6629 2.0660 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 4.8983 3.6411 -0.6484 31 1 3.1655 0.2231 2.1353 32 1 4.3740 1.2113 1.2801 33 1 3.7751 1.7227 2.8761 34 1 0.8760 1.0532 2.4543 35 1 1.4059 2.6302 3.0869 36 1 0.1627 3.0466 0.5852 37 1 -1.1131 3.8349 -0.3023 38 1 -4.7487 3.4014 -0.2387 39 1 -5.0594 5.1425 -0.4666 40 1 -5.3579 4.4486 1.9265 41 1 -4.0304 5.6248 1.7393 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001151691412.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:41 Heat of formation + Delta-G solvation = -66.084884 kcal Electronic energy + Delta-G solvation = -24028.351880 eV Core-core repulsion = 20524.674442 eV Total energy + Delta-G solvation = -3503.677438 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.01112 -39.02675 -37.14006 -36.64238 -33.82256 -32.25112 -31.85268 -30.90901 -28.88907 -28.13085 -25.65348 -24.93505 -23.95018 -21.81749 -21.44073 -19.39981 -19.23567 -18.24994 -18.11534 -16.87559 -16.33943 -15.44887 -15.27392 -14.91738 -14.78532 -14.56438 -14.26049 -14.13467 -13.72793 -13.58715 -12.98552 -12.70294 -12.41394 -12.32465 -11.99296 -11.83814 -11.51231 -11.07879 -11.07311 -10.98168 -10.81356 -10.73994 -10.61718 -10.33778 -10.09141 -9.65381 -9.51084 -9.45745 -8.56743 -8.50420 -8.07886 -6.69715 -5.91272 -3.40261 1.49510 2.84744 3.15525 3.30243 3.37292 3.38870 3.60522 4.09278 4.20735 4.39538 4.70480 4.81258 4.92498 5.18595 5.23370 5.31234 5.35756 5.39220 5.81561 5.98772 6.05537 6.17567 6.25546 6.37546 6.47367 6.54217 6.60417 6.67556 6.75669 6.82750 6.90897 7.00308 7.16105 7.34824 7.46439 7.56079 7.74304 8.07945 8.40229 8.65532 9.13183 9.74597 10.32132 11.15226 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.015595 B = 0.006314 C = 0.005169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.063736 B = 4433.241162 C = 5415.335454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.140 3.860 3 N -0.583 5.583 4 C -0.267 4.267 5 H 0.064 0.936 6 C 0.013 3.987 7 N -0.889 5.889 8 Si 0.896 3.104 9 H -0.282 1.282 10 H -0.291 1.291 11 H -0.282 1.282 12 C 0.176 3.824 13 H 0.101 0.899 14 C -0.144 4.144 15 C 0.104 3.896 16 N -0.693 5.693 17 C 0.567 3.433 18 O -0.543 6.543 19 C -0.070 4.070 20 C 0.006 3.994 21 O -0.300 6.300 22 C 0.013 3.987 23 C 0.018 3.982 24 O -0.287 6.287 25 H 0.033 0.967 26 H 0.051 0.949 27 H 0.046 0.954 28 H 0.041 0.959 29 H 0.037 0.963 30 H 0.256 0.744 31 H 0.030 0.970 32 H 0.078 0.922 33 H 0.033 0.967 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.409 0.591 37 H 0.185 0.815 38 H 0.080 0.920 39 H 0.118 0.882 40 H 0.119 0.881 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.236 2.417 1.400 12.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.014 3.986 3 N -0.304 5.304 4 C -0.397 4.397 5 H 0.082 0.918 6 C -0.188 4.188 7 N -0.531 5.531 8 Si 0.725 3.275 9 H -0.208 1.208 10 H -0.217 1.217 11 H -0.208 1.208 12 C 0.068 3.932 13 H 0.118 0.882 14 C -0.203 4.203 15 C -0.021 4.021 16 N -0.347 5.347 17 C 0.353 3.647 18 O -0.422 6.422 19 C -0.119 4.119 20 C -0.060 4.060 21 O -0.212 6.212 22 C -0.062 4.062 23 C -0.058 4.058 24 O -0.201 6.201 25 H 0.052 0.948 26 H 0.070 0.930 27 H 0.065 0.935 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.049 0.951 32 H 0.097 0.903 33 H 0.052 0.948 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.247 0.753 37 H 0.202 0.798 38 H 0.098 0.902 39 H 0.136 0.864 40 H 0.136 0.864 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -12.195 2.240 2.193 12.592 hybrid contribution -0.126 0.885 -1.217 1.510 sum -12.321 3.126 0.977 12.749 Atomic orbital electron populations 1.22459 1.00027 0.99118 1.01494 1.20764 0.91638 0.87416 0.98803 1.43890 1.76017 1.08312 1.02221 1.19056 1.08756 1.18426 0.93444 0.91815 1.25164 0.94489 1.01328 0.97780 1.69995 1.07729 1.35890 1.39528 0.86495 0.77116 0.81627 0.82255 1.20795 1.21671 1.20847 1.20517 0.88837 0.99625 0.84215 0.88158 1.22012 1.01036 0.97992 0.99269 1.22245 0.87637 0.96365 0.95847 1.45829 1.10407 1.59426 1.19007 1.17118 0.81847 0.79852 0.85876 1.90795 1.83029 1.50380 1.18001 1.20547 0.89327 1.09824 0.92165 1.23358 0.93915 0.97965 0.90779 1.86111 1.14930 1.68703 1.51504 1.23696 0.83325 1.04061 0.95162 1.23629 0.94817 0.93390 0.93984 1.86415 1.23491 1.58511 1.51701 0.94783 0.92982 0.93485 0.94063 0.94436 0.93434 0.95062 0.90257 0.94757 0.92486 0.92593 0.75294 0.79813 0.90200 0.86356 0.86354 0.90646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.08 9.87 37.15 0.37 -2.72 16 2 C 0.14 2.78 5.67 -4.04 -0.02 2.76 16 3 N -0.58 -12.76 1.85 -165.67 -0.31 -13.07 16 4 C -0.27 -6.44 9.25 -15.06 -0.14 -6.58 16 5 H 0.06 1.54 7.89 -52.49 -0.41 1.13 16 6 C 0.01 0.32 4.85 -17.43 -0.08 0.24 16 7 N -0.89 -23.12 10.62 55.49 0.59 -22.53 16 8 Si 0.90 19.89 29.59 -169.99 -5.03 14.86 16 9 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 10 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 12 C 0.18 3.68 1.92 -67.94 -0.13 3.55 16 13 H 0.10 2.38 6.04 -51.93 -0.31 2.07 16 14 C -0.14 -2.88 9.05 37.15 0.34 -2.55 16 15 C 0.10 1.99 4.34 -4.04 -0.02 1.97 16 16 N -0.69 -12.75 3.93 -61.71 -0.24 -12.99 16 17 C 0.57 10.86 7.50 -12.98 -0.10 10.76 16 18 O -0.54 -12.16 16.92 -10.06 -0.17 -12.33 16 19 C -0.07 -1.17 6.61 -37.81 -0.25 -1.42 16 20 C 0.01 0.09 10.58 29.23 0.31 0.40 16 21 O -0.30 -4.03 10.47 -30.83 -0.32 -4.35 16 22 C 0.01 0.13 7.30 37.45 0.27 0.40 16 23 C 0.02 0.19 7.31 37.45 0.27 0.46 16 24 O -0.29 -4.59 10.28 -45.75 -0.47 -5.06 16 25 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.05 0.97 5.00 -51.93 -0.26 0.71 16 27 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.04 0.85 8.09 -51.93 -0.42 0.43 16 29 H 0.04 0.72 6.44 -51.93 -0.33 0.39 16 30 H 0.26 6.58 8.31 -40.82 -0.34 6.24 16 31 H 0.03 0.58 6.66 -51.93 -0.35 0.23 16 32 H 0.08 1.81 7.41 -51.92 -0.38 1.42 16 33 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.06 1.12 7.05 -51.93 -0.37 0.75 16 35 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 36 H 0.41 7.45 5.73 -40.82 -0.23 7.21 16 37 H 0.19 2.68 6.08 -52.48 -0.32 2.36 16 38 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.12 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.12 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 329.04 15.07 4.96 4.96 Total: -1.00 -29.36 329.04 -6.08 -35.45 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: -5.91 Total: 7.79 kcal Atomic # 6 Polarization: 6.46 SS G_CDS: 0.82 Total: 7.28 kcal Atomic # 7 Polarization: -48.64 SS G_CDS: 0.04 Total: -48.59 kcal Atomic # 8 Polarization: -20.78 SS G_CDS: -0.96 Total: -21.74 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.03 Total: 14.86 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -29.36 -6.08 -35.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151691412.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.638 kcal (2) G-P(sol) polarization free energy of solvation -29.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds