Wall clock time and date at job start Tue Mar 31 2020 06:33:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86796 * 120.00023 * 2 1 4 4 H 1.48508 * 109.47004 * 240.00053 * 3 2 1 5 5 H 1.48501 * 109.47299 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47143 * 120.00302 * 3 2 1 7 7 C 1.38812 * 119.99796 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99664 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99947 * 359.97438 * 7 2 1 10 10 C 1.46505 * 119.99648 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46838 * 185.07697 * 10 9 7 12 12 C 1.52991 * 115.54831 * 64.70689 * 11 10 9 13 13 C 1.52998 * 109.47459 * 56.80277 * 12 11 10 14 14 N 1.46503 * 109.47569 * 184.08148 * 13 12 11 15 15 C 1.34769 * 120.00293 * 179.97438 * 14 13 12 16 16 O 1.21283 * 119.99941 * 355.44935 * 15 14 13 17 17 C 1.50703 * 119.99967 * 175.72393 * 15 14 13 18 18 C 1.53002 * 115.54800 * 303.83056 * 17 15 14 19 19 F 1.39891 * 109.47326 * 294.88894 * 18 17 15 20 20 C 1.53003 * 117.49867 * 158.16475 * 17 15 14 21 21 C 1.52996 * 117.49842 * 89.50359 * 17 15 14 22 22 C 1.52995 * 117.49528 * 210.37664 * 11 10 9 23 23 C 1.52996 * 117.49439 * 279.03816 * 11 10 9 24 24 H 0.97000 * 120.00165 * 359.97438 * 1 2 3 25 25 H 0.97000 * 120.00190 * 0.02562 * 9 7 2 26 26 H 1.09002 * 109.47348 * 65.07612 * 10 9 7 27 27 H 1.08997 * 109.47085 * 305.07201 * 10 9 7 28 28 H 1.08999 * 109.47463 * 296.79897 * 12 11 10 29 29 H 1.09004 * 109.47077 * 176.79557 * 12 11 10 30 30 H 1.09001 * 109.47584 * 64.07858 * 13 12 11 31 31 H 1.09000 * 109.46997 * 304.08208 * 13 12 11 32 32 H 0.97002 * 119.99562 * 359.97438 * 14 13 12 33 33 H 1.08997 * 109.47040 * 54.89233 * 18 17 15 34 34 H 1.09001 * 109.46687 * 174.88720 * 18 17 15 35 35 H 1.09006 * 117.49855 * 359.97438 * 20 17 15 36 36 H 1.08997 * 117.49714 * 145.01710 * 20 17 15 37 37 H 1.08998 * 117.49697 * 214.97816 * 21 17 15 38 38 H 1.09002 * 117.49942 * 359.97438 * 21 17 15 39 39 H 1.09005 * 117.49884 * 215.00106 * 22 11 10 40 40 H 1.09006 * 117.50298 * 0.02810 * 22 11 10 41 41 H 1.09001 * 117.50308 * 359.97146 * 23 11 10 42 42 H 1.09005 * 117.49696 * 145.00544 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2126 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6963 1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.0686 -4.8169 -0.1282 12 6 0.2900 -4.8783 -1.4437 13 6 1.2721 -4.9374 -2.6154 14 7 0.5295 -4.8979 -3.8777 15 6 1.1917 -4.9381 -5.0507 16 8 2.4044 -4.9236 -5.0633 17 6 0.4254 -4.9948 -6.3471 18 6 -0.5624 -6.1557 -6.4794 19 9 0.1392 -7.3658 -6.4929 20 6 1.1467 -4.5330 -7.6150 21 6 0.0449 -3.6652 -7.0016 22 6 1.4478 -6.1445 0.5310 23 6 0.3473 -5.2731 1.1416 24 1 -0.4850 0.8400 0.0004 25 1 0.3555 -2.3881 -0.0005 26 1 2.6147 -3.7550 0.9314 27 1 2.7510 -3.6762 -0.8416 28 1 -0.3350 -3.9903 -1.5379 29 1 -0.3394 -5.7683 -1.4522 30 1 1.8474 -5.8616 -2.5612 31 1 1.9491 -4.0845 -2.5654 32 1 -0.4389 -4.8428 -3.8691 33 1 -1.2514 -6.1444 -5.6349 34 1 -1.1239 -6.0508 -7.4078 35 1 2.1755 -4.1878 -7.5113 36 1 0.9172 -5.0559 -8.5433 37 1 -0.9090 -3.6176 -7.5268 38 1 0.3485 -2.7495 -6.4943 39 1 1.1425 -7.0618 0.0274 40 1 2.4019 -6.1914 1.0560 41 1 0.5780 -4.7471 2.0681 42 1 -0.6820 -5.6172 1.0398 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167173995.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:52 Heat of formation + Delta-G solvation = -35.717211 kcal Electronic energy + Delta-G solvation = -22538.606744 eV Core-core repulsion = 19048.618936 eV Total energy + Delta-G solvation = -3489.987808 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.164 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -47.84347 -40.02680 -38.34236 -36.77948 -34.76671 -33.90750 -30.81399 -30.12431 -27.99719 -25.91166 -24.40132 -22.80989 -22.74200 -22.28524 -21.74906 -19.87451 -18.43355 -17.46230 -17.00944 -16.32451 -16.12851 -15.70142 -15.47948 -15.25547 -14.87427 -14.50637 -14.35101 -13.99815 -13.64466 -13.21687 -13.05871 -12.65724 -12.19779 -12.06573 -11.87644 -11.77536 -11.69530 -11.39943 -11.22245 -10.93902 -10.81002 -10.77032 -10.61825 -10.52598 -10.16556 -9.89559 -9.78226 -9.61195 -9.29794 -8.93737 -8.80903 -6.88581 -5.74808 -3.02332 2.54087 3.09066 3.38771 3.45713 3.49699 3.50970 4.04220 4.07492 4.35640 4.44106 4.61144 4.63110 4.73263 4.95412 4.99881 5.08868 5.18001 5.27255 5.35362 5.36296 5.45643 5.57981 5.61308 5.65557 5.75739 5.80210 5.88461 5.90408 6.19001 6.20846 6.25842 6.44023 6.46701 6.49965 6.57003 6.79404 6.84974 7.55331 7.72051 8.27341 8.44480 9.56189 10.14273 10.50273 11.48085 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.013630 B = 0.004449 C = 0.003617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2053.782133 B = 6291.913098 C = 7739.919083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.013 4.013 3 Si 0.905 3.095 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.237 4.237 8 H 0.069 0.931 9 N -0.726 5.726 10 C 0.186 3.814 11 C -0.120 4.120 12 C -0.086 4.086 13 C 0.122 3.878 14 N -0.720 5.720 15 C 0.551 3.449 16 O -0.532 6.532 17 C -0.208 4.208 18 C 0.108 3.892 19 F -0.210 7.210 20 C -0.135 4.135 21 C -0.143 4.143 22 C -0.178 4.178 23 C -0.165 4.165 24 H 0.254 0.746 25 H 0.384 0.616 26 H 0.017 0.983 27 H 0.028 0.972 28 H 0.082 0.918 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.082 0.918 32 H 0.398 0.602 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.110 0.890 36 H 0.105 0.895 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.089 0.911 40 H 0.092 0.908 41 H 0.096 0.904 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.817 -13.503 -11.440 18.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.209 4.209 3 Si 0.736 3.264 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.368 4.368 8 H 0.087 0.913 9 N -0.370 5.370 10 C 0.058 3.942 11 C -0.121 4.121 12 C -0.123 4.123 13 C 0.000 4.000 14 N -0.371 5.371 15 C 0.335 3.665 16 O -0.408 6.408 17 C -0.212 4.212 18 C 0.053 3.947 19 F -0.191 7.191 20 C -0.172 4.172 21 C -0.181 4.181 22 C -0.215 4.215 23 C -0.202 4.202 24 H 0.064 0.936 25 H 0.218 0.782 26 H 0.034 0.966 27 H 0.046 0.954 28 H 0.100 0.900 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.100 0.900 32 H 0.232 0.768 33 H 0.100 0.900 34 H 0.103 0.897 35 H 0.129 0.871 36 H 0.123 0.877 37 H 0.126 0.874 38 H 0.126 0.874 39 H 0.107 0.893 40 H 0.110 0.890 41 H 0.114 0.886 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.773 -13.409 -11.423 18.014 hybrid contribution -0.341 0.917 0.157 0.991 sum -4.114 -12.491 -11.266 17.317 Atomic orbital electron populations 1.69648 1.05058 1.25623 1.58023 1.24690 0.95489 0.97537 1.03146 0.86294 0.78554 0.83640 0.77887 1.21308 1.21717 1.21296 1.19198 0.91006 0.84204 1.42424 0.91340 1.42262 1.05846 0.99591 1.89344 1.20225 0.91951 0.84191 0.97806 1.21567 1.01682 0.96071 0.92803 1.21178 0.97090 1.02259 0.91799 1.21431 0.94906 1.02744 0.80962 1.45911 1.10525 1.74800 1.05862 1.19190 0.87403 0.76085 0.83777 1.90709 1.13751 1.49142 1.87171 1.22134 1.04771 0.99246 0.95020 1.21374 0.91442 0.77990 1.03935 1.92807 1.81431 1.46679 1.98137 1.23022 0.98951 1.01359 0.93911 1.23101 1.00609 0.92591 1.01757 1.23019 1.00004 0.94012 1.04484 1.22932 0.96611 1.03147 0.97494 0.93581 0.78194 0.96568 0.95377 0.89996 0.92151 0.91866 0.90002 0.76800 0.90008 0.89713 0.87132 0.87690 0.87359 0.87358 0.89275 0.88955 0.88559 0.89331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.03 13.06 55.49 0.72 -27.31 16 2 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 3 Si 0.91 22.62 29.55 -169.99 -5.02 17.59 16 4 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 6 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 7 C -0.24 -6.68 9.99 -15.06 -0.15 -6.83 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 N -0.73 -18.22 5.51 -59.90 -0.33 -18.55 16 10 C 0.19 3.79 5.76 -4.04 -0.02 3.77 16 11 C -0.12 -1.93 1.63 -154.51 -0.25 -2.19 16 12 C -0.09 -1.24 5.15 -26.74 -0.14 -1.38 16 13 C 0.12 1.89 5.46 -4.04 -0.02 1.87 16 14 N -0.72 -9.74 5.53 -60.29 -0.33 -10.08 16 15 C 0.55 8.26 7.13 -10.99 -0.08 8.18 16 16 O -0.53 -10.28 16.49 5.55 0.09 -10.18 16 17 C -0.21 -2.25 2.25 -155.66 -0.35 -2.60 16 18 C 0.11 0.91 7.34 37.16 0.27 1.18 16 19 F -0.21 -2.51 17.33 2.25 0.04 -2.47 16 20 C -0.14 -1.34 9.76 -26.69 -0.26 -1.60 16 21 C -0.14 -1.26 9.93 -26.69 -0.26 -1.52 16 22 C -0.18 -2.39 9.92 -26.69 -0.26 -2.65 16 23 C -0.16 -2.42 9.97 -26.69 -0.27 -2.68 16 24 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 25 H 0.38 10.06 7.38 -40.82 -0.30 9.76 16 26 H 0.02 0.35 8.10 -51.93 -0.42 -0.08 16 27 H 0.03 0.60 6.66 -51.93 -0.35 0.25 16 28 H 0.08 1.33 7.86 -51.93 -0.41 0.93 16 29 H 0.06 0.73 8.10 -51.93 -0.42 0.31 16 30 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.08 1.55 6.57 -51.93 -0.34 1.21 16 32 H 0.40 4.21 8.25 -40.82 -0.34 3.88 16 33 H 0.08 0.54 7.91 -51.93 -0.41 0.13 16 34 H 0.08 0.48 8.09 -51.93 -0.42 0.06 16 35 H 0.11 1.29 7.84 -51.93 -0.41 0.89 16 36 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.11 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 42 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 356.62 15.07 5.37 5.37 Total: -1.00 -33.71 356.62 -8.09 -41.80 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: -6.74 Total: 10.73 kcal Atomic # 6 Polarization: -5.01 SS G_CDS: -1.89 Total: -6.91 kcal Atomic # 7 Polarization: -56.00 SS G_CDS: 0.06 Total: -55.94 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: 0.09 Total: -10.18 kcal Atomic # 9 Polarization: -2.51 SS G_CDS: 0.04 Total: -2.47 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.71 -8.09 -41.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167173995.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.084 kcal (2) G-P(sol) polarization free energy of solvation -33.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds