Wall clock time and date at job start Tue Mar 31 2020 06:33:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86796 * 120.00023 * 2 1 4 4 H 1.48508 * 109.47004 * 240.00053 * 3 2 1 5 5 H 1.48501 * 109.47299 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47143 * 120.00302 * 3 2 1 7 7 C 1.38812 * 119.99796 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99664 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99947 * 359.97438 * 7 2 1 10 10 C 1.46505 * 119.99648 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46838 * 185.07697 * 10 9 7 12 12 C 1.52991 * 115.54831 * 64.70689 * 11 10 9 13 13 C 1.52998 * 109.47459 * 56.80277 * 12 11 10 14 14 N 1.46503 * 109.47569 * 184.08148 * 13 12 11 15 15 C 1.34769 * 120.00293 * 179.97438 * 14 13 12 16 16 O 1.21283 * 119.99941 * 355.44935 * 15 14 13 17 17 C 1.50703 * 119.99967 * 175.72393 * 15 14 13 18 18 C 1.53002 * 115.54800 * 303.83056 * 17 15 14 19 19 F 1.39891 * 109.47326 * 294.88894 * 18 17 15 20 20 C 1.53003 * 117.49867 * 158.16475 * 17 15 14 21 21 C 1.52996 * 117.49842 * 89.50359 * 17 15 14 22 22 C 1.52995 * 117.49528 * 210.37664 * 11 10 9 23 23 C 1.52996 * 117.49439 * 279.03816 * 11 10 9 24 24 H 0.97000 * 120.00165 * 359.97438 * 1 2 3 25 25 H 0.97000 * 120.00190 * 0.02562 * 9 7 2 26 26 H 1.09002 * 109.47348 * 65.07612 * 10 9 7 27 27 H 1.08997 * 109.47085 * 305.07201 * 10 9 7 28 28 H 1.08999 * 109.47463 * 296.79897 * 12 11 10 29 29 H 1.09004 * 109.47077 * 176.79557 * 12 11 10 30 30 H 1.09001 * 109.47584 * 64.07858 * 13 12 11 31 31 H 1.09000 * 109.46997 * 304.08208 * 13 12 11 32 32 H 0.97002 * 119.99562 * 359.97438 * 14 13 12 33 33 H 1.08997 * 109.47040 * 54.89233 * 18 17 15 34 34 H 1.09001 * 109.46687 * 174.88720 * 18 17 15 35 35 H 1.09006 * 117.49855 * 359.97438 * 20 17 15 36 36 H 1.08997 * 117.49714 * 145.01710 * 20 17 15 37 37 H 1.08998 * 117.49697 * 214.97816 * 21 17 15 38 38 H 1.09002 * 117.49942 * 359.97438 * 21 17 15 39 39 H 1.09005 * 117.49884 * 215.00106 * 22 11 10 40 40 H 1.09006 * 117.50298 * 0.02810 * 22 11 10 41 41 H 1.09001 * 117.50308 * 359.97146 * 23 11 10 42 42 H 1.09005 * 117.49696 * 145.00544 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2126 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6963 1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.0686 -4.8169 -0.1282 12 6 0.2900 -4.8783 -1.4437 13 6 1.2721 -4.9374 -2.6154 14 7 0.5295 -4.8979 -3.8777 15 6 1.1917 -4.9381 -5.0507 16 8 2.4044 -4.9236 -5.0633 17 6 0.4254 -4.9948 -6.3471 18 6 -0.5624 -6.1557 -6.4794 19 9 0.1392 -7.3658 -6.4929 20 6 1.1467 -4.5330 -7.6150 21 6 0.0449 -3.6652 -7.0016 22 6 1.4478 -6.1445 0.5310 23 6 0.3473 -5.2731 1.1416 24 1 -0.4850 0.8400 0.0004 25 1 0.3555 -2.3881 -0.0005 26 1 2.6147 -3.7550 0.9314 27 1 2.7510 -3.6762 -0.8416 28 1 -0.3350 -3.9903 -1.5379 29 1 -0.3394 -5.7683 -1.4522 30 1 1.8474 -5.8616 -2.5612 31 1 1.9491 -4.0845 -2.5654 32 1 -0.4389 -4.8428 -3.8691 33 1 -1.2514 -6.1444 -5.6349 34 1 -1.1239 -6.0508 -7.4078 35 1 2.1755 -4.1878 -7.5113 36 1 0.9172 -5.0559 -8.5433 37 1 -0.9090 -3.6176 -7.5268 38 1 0.3485 -2.7495 -6.4943 39 1 1.1425 -7.0618 0.0274 40 1 2.4019 -6.1914 1.0560 41 1 0.5780 -4.7471 2.0681 42 1 -0.6820 -5.6172 1.0398 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167173995.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:51 Heat of formation + Delta-G solvation = -58.311242 kcal Electronic energy + Delta-G solvation = -22539.586494 eV Core-core repulsion = 19048.618936 eV Total energy + Delta-G solvation = -3490.967558 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.164 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -48.61167 -41.14735 -39.62155 -37.71440 -36.10969 -35.80310 -32.80220 -31.37297 -28.71778 -27.76301 -25.52756 -24.65910 -23.61239 -23.37527 -22.91385 -21.00086 -19.85002 -19.00560 -18.35936 -17.36646 -17.01320 -16.74888 -16.62348 -16.40750 -16.28599 -15.99339 -15.49021 -15.35438 -14.97731 -14.79045 -14.51419 -14.11292 -13.82259 -13.18626 -13.06659 -12.93726 -12.78843 -12.62093 -12.50562 -12.36206 -12.30062 -12.22194 -11.93270 -11.85329 -11.56389 -11.28629 -11.12422 -10.96826 -10.84581 -10.56122 -10.16106 -8.98321 -7.96081 -5.23331 1.43023 1.44463 1.46933 1.53009 2.03429 2.52941 2.57654 2.89671 3.32290 3.36512 3.57185 3.65106 3.77199 3.81396 3.86190 3.99067 4.07711 4.14416 4.20506 4.35311 4.42693 4.46829 4.58218 4.61822 4.67144 4.82258 4.83648 4.90650 4.94143 4.96580 5.07960 5.13856 5.15780 5.25216 5.32019 5.34551 5.40040 5.46713 6.26462 6.46647 7.15233 7.33809 8.09399 8.36260 9.26919 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.013630 B = 0.004449 C = 0.003617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2053.782133 B = 6291.913098 C = 7739.919083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.964 5.964 2 C -0.067 4.067 3 Si 0.967 3.033 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.249 4.249 8 H 0.066 0.934 9 N -0.733 5.733 10 C 0.186 3.814 11 C -0.144 4.144 12 C -0.070 4.070 13 C 0.131 3.869 14 N -0.710 5.710 15 C 0.540 3.460 16 O -0.588 6.588 17 C -0.218 4.218 18 C 0.105 3.895 19 F -0.232 7.232 20 C -0.143 4.143 21 C -0.122 4.122 22 C -0.151 4.151 23 C -0.162 4.162 24 H 0.252 0.748 25 H 0.377 0.623 26 H 0.011 0.989 27 H 0.015 0.985 28 H 0.061 0.939 29 H 0.097 0.903 30 H 0.064 0.936 31 H 0.037 0.963 32 H 0.415 0.585 33 H 0.103 0.897 34 H 0.124 0.876 35 H 0.081 0.919 36 H 0.134 0.866 37 H 0.150 0.850 38 H 0.087 0.913 39 H 0.117 0.883 40 H 0.094 0.906 41 H 0.079 0.921 42 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.515 -14.753 -12.259 20.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.614 5.614 2 C -0.260 4.260 3 Si 0.796 3.204 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.381 4.381 8 H 0.084 0.916 9 N -0.376 5.376 10 C 0.060 3.940 11 C -0.145 4.145 12 C -0.108 4.108 13 C 0.007 3.993 14 N -0.361 5.361 15 C 0.327 3.673 16 O -0.468 6.468 17 C -0.222 4.222 18 C 0.050 3.950 19 F -0.213 7.213 20 C -0.180 4.180 21 C -0.159 4.159 22 C -0.188 4.188 23 C -0.199 4.199 24 H 0.061 0.939 25 H 0.210 0.790 26 H 0.029 0.971 27 H 0.033 0.967 28 H 0.079 0.921 29 H 0.116 0.884 30 H 0.083 0.917 31 H 0.055 0.945 32 H 0.252 0.748 33 H 0.121 0.879 34 H 0.142 0.858 35 H 0.099 0.901 36 H 0.152 0.848 37 H 0.167 0.833 38 H 0.106 0.894 39 H 0.136 0.864 40 H 0.112 0.888 41 H 0.098 0.902 42 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -5.486 -14.683 -12.230 19.881 hybrid contribution 0.257 1.294 0.438 1.390 sum -5.229 -13.388 -11.792 18.591 Atomic orbital electron populations 1.69784 1.06281 1.26084 1.59273 1.25436 0.96383 1.00602 1.03574 0.85309 0.77378 0.79673 0.77992 1.20976 1.21591 1.20496 1.19544 0.91227 0.85700 1.41622 0.91576 1.42374 1.05597 1.00472 1.89132 1.20258 0.92764 0.84306 0.96673 1.21430 1.02320 0.96215 0.94519 1.21055 0.96473 1.02942 0.90332 1.21187 0.94896 1.00775 0.82442 1.45835 1.11312 1.73899 1.05070 1.20072 0.87160 0.74674 0.85432 1.90675 1.16328 1.51667 1.88104 1.22167 1.05605 1.01722 0.92707 1.21715 0.90630 0.75642 1.06980 1.92763 1.82100 1.48105 1.98346 1.23107 0.97960 1.02188 0.94770 1.23208 1.01805 0.90579 1.00344 1.23119 0.99690 0.93370 1.02606 1.22977 0.98222 1.02998 0.95677 0.93914 0.79030 0.97119 0.96695 0.92074 0.88414 0.91721 0.94483 0.74846 0.87915 0.85783 0.90051 0.84803 0.83252 0.89403 0.86434 0.88767 0.90206 0.87098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.66 13.06 21.65 0.28 -58.38 16 2 C -0.07 -3.91 5.50 84.86 0.47 -3.45 16 3 Si 0.97 47.03 29.55 68.60 2.03 49.06 16 4 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 5 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 6 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 7 C -0.25 -14.36 9.99 84.03 0.84 -13.52 16 8 H 0.07 3.75 7.83 -2.91 -0.02 3.73 16 9 N -0.73 -37.87 5.51 -343.43 -1.89 -39.76 16 10 C 0.19 7.83 5.76 86.38 0.50 8.33 16 11 C -0.14 -4.52 1.63 -52.19 -0.09 -4.61 16 12 C -0.07 -1.97 5.15 30.59 0.16 -1.82 16 13 C 0.13 4.10 5.46 86.38 0.47 4.57 16 14 N -0.71 -19.05 5.53 -463.06 -2.56 -21.61 16 15 C 0.54 16.42 7.13 87.66 0.62 17.05 16 16 O -0.59 -23.96 16.49 -3.04 -0.05 -24.01 16 17 C -0.22 -4.41 2.25 -52.93 -0.12 -4.52 16 18 C 0.10 1.44 7.34 71.98 0.53 1.97 16 19 F -0.23 -5.11 17.33 44.97 0.78 -4.33 16 20 C -0.14 -2.68 9.76 30.62 0.30 -2.38 16 21 C -0.12 -1.89 9.93 30.62 0.30 -1.59 16 22 C -0.15 -3.66 9.92 30.62 0.30 -3.36 16 23 C -0.16 -4.44 9.97 30.62 0.31 -4.14 16 24 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 25 H 0.38 20.30 7.38 -92.71 -0.68 19.61 16 26 H 0.01 0.47 8.10 -2.39 -0.02 0.45 16 27 H 0.02 0.67 6.66 -2.39 -0.02 0.66 16 28 H 0.06 1.98 7.86 -2.39 -0.02 1.96 16 29 H 0.10 2.03 8.10 -2.38 -0.02 2.01 16 30 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.04 1.49 6.57 -2.39 -0.02 1.48 16 32 H 0.41 8.17 8.25 -92.71 -0.76 7.40 16 33 H 0.10 0.97 7.91 -2.39 -0.02 0.95 16 34 H 0.12 0.78 8.09 -2.39 -0.02 0.76 16 35 H 0.08 2.00 7.84 -2.38 -0.02 1.98 16 36 H 0.13 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.15 1.10 8.14 -2.39 -0.02 1.09 16 38 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.12 2.26 8.14 -2.38 -0.02 2.24 16 40 H 0.09 2.28 8.14 -2.38 -0.02 2.26 16 41 H 0.08 2.46 8.14 -2.39 -0.02 2.45 16 42 H 0.11 2.56 8.14 -2.38 -0.02 2.54 16 Total: -1.00 -76.68 356.62 2.76 -73.92 By element: Atomic # 1 Polarization: 33.00 SS G_CDS: -0.42 Total: 32.57 kcal Atomic # 6 Polarization: -12.06 SS G_CDS: 4.59 Total: -7.46 kcal Atomic # 7 Polarization: -115.58 SS G_CDS: -4.17 Total: -119.75 kcal Atomic # 8 Polarization: -23.96 SS G_CDS: -0.05 Total: -24.01 kcal Atomic # 9 Polarization: -5.11 SS G_CDS: 0.78 Total: -4.33 kcal Atomic # 14 Polarization: 47.03 SS G_CDS: 2.03 Total: 49.06 kcal Total: -76.68 2.76 -73.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167173995.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.611 kcal (2) G-P(sol) polarization free energy of solvation -76.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds