Wall clock time and date at job start Tue Mar 31 2020 06:34:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31083 * 1 3 3 Si 1.86799 * 120.00043 * 2 1 4 4 H 1.48504 * 109.47128 * 264.77937 * 3 2 1 5 5 H 1.48502 * 109.47306 * 24.77794 * 3 2 1 6 6 H 1.48499 * 109.47510 * 144.77853 * 3 2 1 7 7 C 1.39671 * 120.00315 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00052 * 350.56740 * 7 2 1 9 9 C 1.40906 * 120.00602 * 170.57111 * 7 2 1 10 10 C 1.38964 * 126.92702 * 334.28926 * 9 7 2 11 11 N 1.35662 * 109.23876 * 179.97438 * 10 9 7 12 12 H 0.96998 * 124.70101 * 179.97438 * 11 10 9 13 13 C 1.38146 * 110.60360 * 0.02562 * 11 10 9 14 14 C 1.39195 * 132.74373 * 179.97438 * 13 11 10 15 15 C 1.37945 * 120.13505 * 180.02562 * 14 13 11 16 16 C 1.38489 * 120.70449 * 359.97438 * 15 14 13 17 17 C 1.38697 * 120.15611 * 359.96050 * 16 15 14 18 18 N 1.39404 * 120.22700 * 180.02562 * 17 16 15 19 19 C 1.46505 * 120.00106 * 4.82727 * 18 17 16 20 20 C 1.52998 * 109.46876 * 180.02562 * 19 18 17 21 21 C 1.53002 * 109.46928 * 179.97438 * 20 19 18 22 22 C 1.53783 * 113.61418 * 274.13355 * 21 20 19 23 23 C 1.53948 * 87.01898 * 220.05097 * 22 21 20 24 24 C 1.53778 * 87.11545 * 25.36070 * 23 22 21 25 25 C 1.39803 * 119.54152 * 0.09307 * 17 16 15 26 26 H 0.96998 * 120.00224 * 0.02562 * 1 2 3 27 27 H 1.07999 * 125.38756 * 359.71302 * 10 9 7 28 28 H 1.08003 * 119.93394 * 0.04389 * 14 13 11 29 29 H 1.08001 * 119.64670 * 179.97438 * 15 14 13 30 30 H 1.07998 * 119.92329 * 179.97438 * 16 15 14 31 31 H 0.96996 * 119.99848 * 184.82477 * 18 17 16 32 32 H 1.08997 * 109.46927 * 299.99897 * 19 18 17 33 33 H 1.08995 * 109.47147 * 59.99804 * 19 18 17 34 34 H 1.09002 * 109.47410 * 300.00072 * 20 19 18 35 35 H 1.09002 * 109.47240 * 60.00190 * 20 19 18 36 36 H 1.08995 * 112.85067 * 45.33359 * 21 20 19 37 37 H 1.08998 * 113.61194 * 334.56928 * 22 21 20 38 38 H 1.09004 * 113.60994 * 105.46794 * 22 21 20 39 39 H 1.09006 * 113.53485 * 270.81365 * 23 22 21 40 40 H 1.09000 * 113.66907 * 139.93878 * 23 22 21 41 41 H 1.08996 * 113.62049 * 220.08987 * 24 23 22 42 42 H 1.09010 * 113.68411 * 89.19830 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3108 0.0000 0.0000 3 14 2.2448 1.6177 0.0000 4 1 2.6027 1.9827 -1.3943 5 1 1.3915 2.6820 0.5868 6 1 3.4829 1.4746 0.8075 7 6 2.0093 -1.2095 0.0005 8 1 1.4802 -2.1385 0.1542 9 6 3.4040 -1.2179 -0.1994 10 6 4.1563 -0.2651 -0.8756 11 7 5.4633 -0.6279 -0.8515 12 1 6.1843 -0.1223 -1.2580 13 6 5.6249 -1.8180 -0.1688 14 6 6.7426 -2.5931 0.1272 15 6 6.6034 -3.7644 0.8423 16 6 5.3568 -4.1849 1.2750 17 6 4.2294 -3.4279 0.9927 18 7 2.9740 -3.8495 1.4280 19 6 2.8536 -5.0384 2.2755 20 6 1.3800 -5.2804 2.6082 21 6 1.2543 -6.5225 3.4929 22 6 1.1777 -7.8381 2.7003 23 6 0.1160 -8.2952 3.7170 24 6 -0.1846 -6.8061 3.9555 25 6 4.3607 -2.2399 0.2675 26 1 -0.4850 0.8400 -0.0004 27 1 3.7623 0.6217 -1.3496 28 1 7.7208 -2.2766 -0.2035 29 1 7.4759 -4.3599 1.0672 30 1 5.2623 -5.1043 1.8336 31 1 2.1801 -3.3556 1.1697 32 1 3.2532 -5.9036 1.7465 33 1 3.4144 -4.8855 3.1976 34 1 0.9800 -4.4153 3.1370 35 1 0.8197 -5.4336 1.6859 36 1 1.9847 -6.5418 4.3016 37 1 0.7899 -7.7165 1.6889 38 1 2.0971 -8.4227 2.7348 39 1 0.5356 -8.8007 4.5869 40 1 -0.7133 -8.8417 3.2679 41 1 -0.3635 -6.5588 5.0019 42 1 -0.9456 -6.4007 3.2886 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168889101.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:48 Heat of formation + Delta-G solvation = 60.304737 kcal Electronic energy + Delta-G solvation = -21773.800758 eV Core-core repulsion = 18718.745999 eV Total energy + Delta-G solvation = -3055.054759 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.158 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.89066 -38.99961 -36.74231 -34.67091 -33.31961 -31.45049 -29.81723 -28.21782 -27.45121 -25.68896 -24.76011 -24.09806 -21.96751 -21.44841 -20.19488 -19.48915 -19.29954 -17.52012 -16.34839 -15.70231 -15.50907 -15.18308 -14.79029 -14.48937 -14.40743 -14.19118 -13.54816 -13.31992 -13.00925 -12.56458 -12.49220 -12.46679 -12.44514 -11.63222 -11.53242 -11.37680 -11.18885 -10.93589 -10.73420 -10.63932 -10.58126 -10.32466 -10.22925 -10.10911 -10.00498 -9.60643 -9.33477 -9.02399 -7.59417 -7.16697 -6.67272 -6.15620 -4.11544 2.32871 2.67060 3.10434 3.24784 3.37065 3.87263 4.07467 4.17254 4.42465 4.57154 4.61580 4.75907 4.81722 4.85131 5.29063 5.38737 5.49050 5.54053 5.64988 5.71091 5.73313 5.73661 5.83333 5.88109 5.90731 5.97201 6.08759 6.15377 6.25368 6.28562 6.38456 6.51308 6.52417 6.69928 6.76714 7.01917 7.17075 7.28360 7.44683 7.65195 7.81145 8.14942 8.35160 8.42883 8.65368 8.72272 8.92915 9.04477 10.38096 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.014132 B = 0.005151 C = 0.003875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.871188 B = 5434.264465 C = 7223.195631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.841 5.841 2 C 0.081 3.919 3 Si 0.914 3.086 4 H -0.276 1.276 5 H -0.299 1.299 6 H -0.250 1.250 7 C -0.431 4.431 8 H 0.084 0.916 9 C 0.049 3.951 10 C -0.180 4.180 11 N -0.583 5.583 12 H 0.396 0.604 13 C 0.141 3.859 14 C -0.219 4.219 15 C -0.053 4.053 16 C -0.279 4.279 17 C 0.286 3.714 18 N -0.743 5.743 19 C 0.130 3.870 20 C -0.123 4.123 21 C -0.105 4.105 22 C -0.138 4.138 23 C -0.144 4.144 24 C -0.138 4.138 25 C -0.191 4.191 26 H 0.279 0.721 27 H 0.143 0.857 28 H 0.098 0.902 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.411 0.589 32 H 0.052 0.948 33 H 0.051 0.949 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.065 0.935 39 H 0.076 0.924 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.651 -10.093 5.309 11.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C -0.133 4.133 3 Si 0.744 3.256 4 H -0.203 1.203 5 H -0.227 1.227 6 H -0.174 1.174 7 C -0.464 4.464 8 H 0.102 0.898 9 C 0.043 3.957 10 C -0.301 4.301 11 N -0.184 5.184 12 H 0.230 0.770 13 C 0.028 3.972 14 C -0.243 4.243 15 C -0.074 4.074 16 C -0.304 4.304 17 C 0.180 3.820 18 N -0.375 5.375 19 C 0.005 3.995 20 C -0.161 4.161 21 C -0.124 4.124 22 C -0.175 4.175 23 C -0.181 4.181 24 C -0.175 4.175 25 C -0.200 4.200 26 H 0.089 0.911 27 H 0.160 0.840 28 H 0.117 0.883 29 H 0.124 0.876 30 H 0.124 0.876 31 H 0.250 0.750 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.108 0.892 37 H 0.100 0.900 38 H 0.084 0.916 39 H 0.095 0.905 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 3.349 -10.026 5.368 11.855 hybrid contribution 0.348 1.332 -0.358 1.423 sum 3.697 -8.694 5.010 10.693 Atomic orbital electron populations 1.69724 1.07407 1.29291 1.40517 1.25842 0.94759 1.00783 0.91870 0.86348 0.80081 0.80333 0.78855 1.20321 1.22667 1.17364 1.18450 0.89242 0.94623 1.44062 0.89836 1.18146 0.92263 0.90823 0.94458 1.21647 0.82896 1.07073 1.18511 1.40947 1.07922 1.19775 1.49738 0.77047 1.17918 0.94537 0.87843 0.96896 1.19525 0.95088 0.98657 1.10993 1.20180 0.95921 0.94799 0.96450 1.20005 0.91856 1.03228 1.15313 1.17203 0.85150 0.89920 0.89717 1.44978 1.06925 1.30228 1.55338 1.21179 0.95956 0.88349 0.93977 1.21761 0.96344 0.97941 1.00024 1.22456 0.97431 0.94141 0.98351 1.23027 0.99095 0.96938 0.98485 1.22838 0.99228 0.96564 0.99498 1.22942 0.97059 0.96140 1.01371 1.18818 0.93822 0.98184 1.09222 0.91117 0.83957 0.88342 0.87589 0.87636 0.74961 0.92973 0.93075 0.91013 0.91182 0.89230 0.89996 0.91647 0.90490 0.91718 0.91691 0.89956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.95 13.94 55.54 0.77 -22.17 16 2 C 0.08 2.17 5.51 -17.34 -0.10 2.07 16 3 Si 0.91 21.37 24.59 -169.99 -4.18 17.19 16 4 H -0.28 -6.21 6.50 56.52 0.37 -5.84 16 5 H -0.30 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.25 -6.00 6.73 56.52 0.38 -5.62 16 7 C -0.43 -11.67 9.27 -38.04 -0.35 -12.02 16 8 H 0.08 2.31 6.04 -52.48 -0.32 1.99 16 9 C 0.05 1.28 5.57 -104.82 -0.58 0.69 16 10 C -0.18 -4.32 9.24 -15.59 -0.14 -4.46 16 11 N -0.58 -12.32 5.99 -9.80 -0.06 -12.38 16 12 H 0.40 6.76 8.96 -40.82 -0.37 6.39 16 13 C 0.14 3.11 7.23 -83.91 -0.61 2.51 16 14 C -0.22 -4.18 10.07 -39.33 -0.40 -4.58 16 15 C -0.05 -0.96 10.00 -39.60 -0.40 -1.36 16 16 C -0.28 -5.30 9.32 -39.32 -0.37 -5.66 16 17 C 0.29 6.16 6.67 -83.66 -0.56 5.60 16 18 N -0.74 -14.56 5.72 -58.52 -0.33 -14.90 16 19 C 0.13 1.98 4.94 -4.04 -0.02 1.96 16 20 C -0.12 -1.64 5.15 -26.73 -0.14 -1.77 16 21 C -0.10 -1.13 3.64 -89.81 -0.33 -1.46 16 22 C -0.14 -1.38 7.65 -25.83 -0.20 -1.58 16 23 C -0.14 -1.30 8.09 -25.83 -0.21 -1.51 16 24 C -0.14 -1.38 7.65 -25.92 -0.20 -1.58 16 25 C -0.19 -4.58 6.27 -104.76 -0.66 -5.24 16 26 H 0.28 7.03 8.30 -40.82 -0.34 6.70 16 27 H 0.14 3.34 4.38 -52.49 -0.23 3.11 16 28 H 0.10 1.61 8.06 -52.48 -0.42 1.19 16 29 H 0.11 1.55 8.06 -52.49 -0.42 1.12 16 30 H 0.11 1.76 6.73 -52.49 -0.35 1.41 16 31 H 0.41 8.75 5.55 -40.82 -0.23 8.53 16 32 H 0.05 0.76 7.77 -51.93 -0.40 0.35 16 33 H 0.05 0.75 8.11 -51.93 -0.42 0.33 16 34 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.07 0.97 7.87 -51.93 -0.41 0.56 16 36 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.08 0.86 7.92 -51.93 -0.41 0.44 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.08 0.86 8.10 -51.92 -0.42 0.44 16 LS Contribution 331.53 15.07 5.00 5.00 Total: -1.00 -28.98 331.53 -10.18 -39.15 By element: Atomic # 1 Polarization: 22.61 SS G_CDS: -6.13 Total: 16.48 kcal Atomic # 6 Polarization: -23.13 SS G_CDS: -5.24 Total: -28.38 kcal Atomic # 7 Polarization: -49.83 SS G_CDS: 0.38 Total: -49.45 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.18 Total: 17.19 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -28.98 -10.18 -39.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168889101.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.459 kcal (2) G-P(sol) polarization free energy of solvation -28.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds