Wall clock time and date at job start Tue Mar 31 2020 06:34:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31083 * 1 3 3 Si 1.86799 * 120.00043 * 2 1 4 4 H 1.48504 * 109.47128 * 264.77937 * 3 2 1 5 5 H 1.48502 * 109.47306 * 24.77794 * 3 2 1 6 6 H 1.48499 * 109.47510 * 144.77853 * 3 2 1 7 7 C 1.39671 * 120.00315 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00052 * 350.56740 * 7 2 1 9 9 C 1.40906 * 120.00602 * 170.57111 * 7 2 1 10 10 C 1.38964 * 126.92702 * 334.28926 * 9 7 2 11 11 N 1.35662 * 109.23876 * 179.97438 * 10 9 7 12 12 H 0.96998 * 124.70101 * 179.97438 * 11 10 9 13 13 C 1.38146 * 110.60360 * 0.02562 * 11 10 9 14 14 C 1.39195 * 132.74373 * 179.97438 * 13 11 10 15 15 C 1.37945 * 120.13505 * 180.02562 * 14 13 11 16 16 C 1.38489 * 120.70449 * 359.97438 * 15 14 13 17 17 C 1.38697 * 120.15611 * 359.96050 * 16 15 14 18 18 N 1.39404 * 120.22700 * 180.02562 * 17 16 15 19 19 C 1.46505 * 120.00106 * 4.82727 * 18 17 16 20 20 C 1.52998 * 109.46876 * 180.02562 * 19 18 17 21 21 C 1.53002 * 109.46928 * 179.97438 * 20 19 18 22 22 C 1.53783 * 113.61418 * 274.13355 * 21 20 19 23 23 C 1.53948 * 87.01898 * 220.05097 * 22 21 20 24 24 C 1.53778 * 87.11545 * 25.36070 * 23 22 21 25 25 C 1.39803 * 119.54152 * 0.09307 * 17 16 15 26 26 H 0.96998 * 120.00224 * 0.02562 * 1 2 3 27 27 H 1.07999 * 125.38756 * 359.71302 * 10 9 7 28 28 H 1.08003 * 119.93394 * 0.04389 * 14 13 11 29 29 H 1.08001 * 119.64670 * 179.97438 * 15 14 13 30 30 H 1.07998 * 119.92329 * 179.97438 * 16 15 14 31 31 H 0.96996 * 119.99848 * 184.82477 * 18 17 16 32 32 H 1.08997 * 109.46927 * 299.99897 * 19 18 17 33 33 H 1.08995 * 109.47147 * 59.99804 * 19 18 17 34 34 H 1.09002 * 109.47410 * 300.00072 * 20 19 18 35 35 H 1.09002 * 109.47240 * 60.00190 * 20 19 18 36 36 H 1.08995 * 112.85067 * 45.33359 * 21 20 19 37 37 H 1.08998 * 113.61194 * 334.56928 * 22 21 20 38 38 H 1.09004 * 113.60994 * 105.46794 * 22 21 20 39 39 H 1.09006 * 113.53485 * 270.81365 * 23 22 21 40 40 H 1.09000 * 113.66907 * 139.93878 * 23 22 21 41 41 H 1.08996 * 113.62049 * 220.08987 * 24 23 22 42 42 H 1.09010 * 113.68411 * 89.19830 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3108 0.0000 0.0000 3 14 2.2448 1.6177 0.0000 4 1 2.6027 1.9827 -1.3943 5 1 1.3915 2.6820 0.5868 6 1 3.4829 1.4746 0.8075 7 6 2.0093 -1.2095 0.0005 8 1 1.4802 -2.1385 0.1542 9 6 3.4040 -1.2179 -0.1994 10 6 4.1563 -0.2651 -0.8756 11 7 5.4633 -0.6279 -0.8515 12 1 6.1843 -0.1223 -1.2580 13 6 5.6249 -1.8180 -0.1688 14 6 6.7426 -2.5931 0.1272 15 6 6.6034 -3.7644 0.8423 16 6 5.3568 -4.1849 1.2750 17 6 4.2294 -3.4279 0.9927 18 7 2.9740 -3.8495 1.4280 19 6 2.8536 -5.0384 2.2755 20 6 1.3800 -5.2804 2.6082 21 6 1.2543 -6.5225 3.4929 22 6 1.1777 -7.8381 2.7003 23 6 0.1160 -8.2952 3.7170 24 6 -0.1846 -6.8061 3.9555 25 6 4.3607 -2.2399 0.2675 26 1 -0.4850 0.8400 -0.0004 27 1 3.7623 0.6217 -1.3496 28 1 7.7208 -2.2766 -0.2035 29 1 7.4759 -4.3599 1.0672 30 1 5.2623 -5.1043 1.8336 31 1 2.1801 -3.3556 1.1697 32 1 3.2532 -5.9036 1.7465 33 1 3.4144 -4.8855 3.1976 34 1 0.9800 -4.4153 3.1370 35 1 0.8197 -5.4336 1.6859 36 1 1.9847 -6.5418 4.3016 37 1 0.7899 -7.7165 1.6889 38 1 2.0971 -8.4227 2.7348 39 1 0.5356 -8.8007 4.5869 40 1 -0.7133 -8.8417 3.2679 41 1 -0.3635 -6.5588 5.0019 42 1 -0.9456 -6.4007 3.2886 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168889101.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:47 Heat of formation + Delta-G solvation = 44.247203 kcal Electronic energy + Delta-G solvation = -21774.497065 eV Core-core repulsion = 18718.745999 eV Total energy + Delta-G solvation = -3055.751066 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.158 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.55791 -39.89933 -38.24501 -36.19073 -35.17346 -32.92404 -31.42489 -29.85935 -28.95114 -26.54614 -26.30571 -25.50323 -23.19176 -23.03441 -21.68190 -21.18984 -20.24845 -19.15721 -18.20297 -17.11680 -16.69685 -16.59274 -16.14016 -15.99994 -15.73921 -15.60318 -15.05705 -14.89977 -14.81281 -14.07185 -13.62285 -13.49591 -13.39422 -13.29192 -13.18668 -12.81199 -12.58512 -12.46821 -12.25114 -12.02807 -11.88866 -11.79294 -11.51932 -11.40604 -11.07327 -11.01414 -10.97703 -10.72152 -9.36747 -8.82218 -8.66425 -7.78706 -6.10273 0.71917 1.05915 1.23866 1.36393 1.49559 2.00184 2.21120 2.69056 2.83780 3.13209 3.49940 3.66284 3.77134 3.88332 4.00635 4.22430 4.25266 4.36269 4.40577 4.53166 4.63794 4.65140 4.72088 4.83087 4.90624 4.91778 4.95212 5.03181 5.04149 5.09100 5.12981 5.18747 5.24758 5.31877 5.44044 5.47396 5.61407 5.67196 5.93490 5.97277 6.04159 6.43459 6.48239 6.78549 6.87191 6.98214 7.06420 7.26400 8.43342 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.014132 B = 0.005151 C = 0.003875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.871188 B = 5434.264465 C = 7223.195631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.038 3.962 3 Si 0.969 3.031 4 H -0.260 1.260 5 H -0.291 1.291 6 H -0.260 1.260 7 C -0.450 4.450 8 H 0.058 0.942 9 C 0.012 3.988 10 C -0.171 4.171 11 N -0.577 5.577 12 H 0.416 0.584 13 C 0.132 3.868 14 C -0.221 4.221 15 C -0.044 4.044 16 C -0.274 4.274 17 C 0.261 3.739 18 N -0.752 5.752 19 C 0.131 3.869 20 C -0.116 4.116 21 C -0.103 4.103 22 C -0.139 4.139 23 C -0.134 4.134 24 C -0.142 4.142 25 C -0.231 4.231 26 H 0.284 0.716 27 H 0.148 0.852 28 H 0.132 0.868 29 H 0.151 0.849 30 H 0.131 0.869 31 H 0.397 0.603 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.054 0.946 35 H 0.056 0.944 36 H 0.101 0.899 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.091 0.909 40 H 0.070 0.930 41 H 0.072 0.928 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.535 -11.298 5.994 14.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.171 4.171 3 Si 0.796 3.204 4 H -0.186 1.186 5 H -0.219 1.219 6 H -0.185 1.185 7 C -0.483 4.483 8 H 0.076 0.924 9 C 0.006 3.994 10 C -0.294 4.294 11 N -0.181 5.181 12 H 0.253 0.747 13 C 0.019 3.981 14 C -0.244 4.244 15 C -0.063 4.063 16 C -0.299 4.299 17 C 0.155 3.845 18 N -0.381 5.381 19 C 0.008 3.992 20 C -0.154 4.154 21 C -0.122 4.122 22 C -0.176 4.176 23 C -0.172 4.172 24 C -0.179 4.179 25 C -0.241 4.241 26 H 0.093 0.907 27 H 0.165 0.835 28 H 0.150 0.850 29 H 0.169 0.831 30 H 0.149 0.851 31 H 0.234 0.766 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.119 0.881 37 H 0.090 0.910 38 H 0.094 0.906 39 H 0.110 0.890 40 H 0.088 0.912 41 H 0.090 0.910 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 6.265 -11.253 6.049 14.229 hybrid contribution -0.415 1.546 -0.550 1.693 sum 5.850 -9.707 5.499 12.597 Atomic orbital electron populations 1.69781 1.08477 1.30165 1.42860 1.26508 0.95398 1.03387 0.91763 0.85501 0.78423 0.77091 0.79348 1.18618 1.21854 1.18480 1.18497 0.90304 0.94110 1.45420 0.92394 1.18334 0.92171 0.92852 0.96070 1.21736 0.84159 1.06355 1.17114 1.40865 1.07457 1.19965 1.49837 0.74688 1.18347 0.94906 0.88141 0.96704 1.19945 0.95494 0.98435 1.10572 1.20729 0.96858 0.94387 0.94369 1.20402 0.91468 1.03499 1.14530 1.17580 0.86578 0.90084 0.90281 1.45214 1.06063 1.31176 1.55695 1.21364 0.97133 0.87060 0.93656 1.21700 0.95071 0.98774 0.99840 1.22485 0.98364 0.93047 0.98326 1.23023 0.99966 0.96438 0.98179 1.22820 0.98995 0.95744 0.99610 1.22962 0.96217 0.97211 1.01548 1.19171 0.94424 0.99358 1.11112 0.90664 0.83530 0.85045 0.83138 0.85147 0.76585 0.91787 0.92182 0.92676 0.92475 0.88068 0.90950 0.90597 0.89004 0.91156 0.90967 0.90993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -50.37 13.94 21.79 0.30 -50.07 16 2 C 0.04 2.13 5.51 85.15 0.47 2.60 16 3 Si 0.97 44.87 24.59 68.60 1.69 46.56 16 4 H -0.26 -11.22 6.50 99.48 0.65 -10.57 16 5 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 6 H -0.26 -12.36 6.73 99.48 0.67 -11.69 16 7 C -0.45 -25.69 9.27 23.27 0.22 -25.48 16 8 H 0.06 3.48 6.04 -2.91 -0.02 3.46 16 9 C 0.01 0.66 5.57 -19.99 -0.11 0.55 16 10 C -0.17 -8.18 9.24 84.28 0.78 -7.40 16 11 N -0.58 -23.55 5.99 -184.91 -1.11 -24.66 16 12 H 0.42 13.22 8.96 -92.71 -0.83 12.39 16 13 C 0.13 5.58 7.23 38.86 0.28 5.86 16 14 C -0.22 -7.61 10.07 22.43 0.23 -7.38 16 15 C -0.04 -1.38 10.00 22.26 0.22 -1.15 16 16 C -0.27 -9.65 9.32 22.44 0.21 -9.44 16 17 C 0.26 11.19 6.67 38.43 0.26 11.45 16 18 N -0.75 -30.36 5.72 -339.06 -1.94 -32.30 16 19 C 0.13 3.95 4.94 86.38 0.43 4.38 16 20 C -0.12 -3.18 5.15 30.59 0.16 -3.02 16 21 C -0.10 -2.14 3.64 -10.27 -0.04 -2.18 16 22 C -0.14 -2.58 7.65 31.18 0.24 -2.34 16 23 C -0.13 -2.17 8.09 31.18 0.25 -1.92 16 24 C -0.14 -2.74 7.65 31.12 0.24 -2.50 16 25 C -0.23 -11.19 6.27 -19.95 -0.13 -11.32 16 26 H 0.28 14.88 8.30 -92.71 -0.77 14.11 16 27 H 0.15 6.78 4.38 -2.91 -0.01 6.77 16 28 H 0.13 3.64 8.06 -2.91 -0.02 3.61 16 29 H 0.15 3.43 8.06 -2.91 -0.02 3.41 16 30 H 0.13 3.88 6.73 -2.91 -0.02 3.86 16 31 H 0.40 18.17 5.55 -92.71 -0.51 17.66 16 32 H 0.06 1.77 7.77 -2.39 -0.02 1.75 16 33 H 0.06 1.70 8.11 -2.39 -0.02 1.68 16 34 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.06 1.69 7.87 -2.39 -0.02 1.67 16 36 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.07 1.48 7.92 -2.39 -0.02 1.46 16 38 H 0.08 1.25 8.14 -2.38 -0.02 1.24 16 39 H 0.09 1.24 8.14 -2.38 -0.02 1.22 16 40 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.07 1.53 8.10 -2.38 -0.02 1.51 16 Total: -1.00 -64.88 331.53 2.24 -62.64 By element: Atomic # 1 Polarization: 47.52 SS G_CDS: -0.40 Total: 47.12 kcal Atomic # 6 Polarization: -52.99 SS G_CDS: 3.70 Total: -49.29 kcal Atomic # 7 Polarization: -104.28 SS G_CDS: -2.74 Total: -107.03 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 1.69 Total: 46.56 kcal Total: -64.88 2.24 -62.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168889101.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.884 kcal (2) G-P(sol) polarization free energy of solvation -64.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.637 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds