Wall clock time and date at job start Tue Mar 31 2020 05:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47410 * 2 1 4 4 C 1.53000 * 109.47265 * 240.00205 * 2 1 3 5 5 O 1.45199 * 109.47466 * 120.00129 * 2 1 3 6 6 C 1.34592 * 117.00045 * 60.00057 * 5 2 1 7 7 O 1.21466 * 119.99465 * 0.02562 * 6 5 2 8 8 N 1.34774 * 120.00404 * 180.02562 * 6 5 2 9 9 C 1.46759 * 124.35066 * 180.02562 * 8 6 5 10 10 C 1.54482 * 105.47110 * 162.96414 * 9 8 6 11 11 H 1.08998 * 111.00313 * 267.28018 * 10 9 8 12 12 N 1.46905 * 110.96869 * 143.53440 * 10 9 8 13 13 C 1.46901 * 110.99870 * 161.16684 * 12 10 9 14 14 C 1.50697 * 109.46943 * 180.02562 * 13 12 10 15 15 H 1.08000 * 120.00162 * 359.97438 * 14 13 12 16 16 C 1.37883 * 120.00023 * 180.02562 * 14 13 12 17 17 N 1.31517 * 119.99532 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 120.00003 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46907 * 60.00117 * 18 16 14 20 20 H 1.48504 * 109.47065 * 179.97438 * 18 16 14 21 21 H 1.48494 * 109.47302 * 300.00070 * 18 16 14 22 22 C 1.54623 * 101.76670 * 25.41508 * 10 9 8 23 23 C 1.34423 * 124.34663 * 0.02562 * 8 6 5 24 24 O 1.21236 * 124.94095 * 0.39021 * 23 8 6 25 25 H 1.09001 * 109.46789 * 299.99552 * 1 2 3 26 26 H 1.08997 * 109.47396 * 59.99609 * 1 2 3 27 27 H 1.09001 * 109.46989 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47198 * 180.02562 * 3 2 1 29 29 H 1.08997 * 109.47160 * 300.00536 * 3 2 1 30 30 H 1.09003 * 109.47069 * 59.99999 * 3 2 1 31 31 H 1.08993 * 109.47347 * 300.00172 * 4 2 1 32 32 H 1.09005 * 109.47337 * 59.99566 * 4 2 1 33 33 H 1.09001 * 109.47936 * 179.97438 * 4 2 1 34 34 H 1.08993 * 110.24890 * 43.96285 * 9 8 6 35 35 H 1.08998 * 110.24325 * 281.96113 * 9 8 6 36 36 H 1.00901 * 110.99869 * 37.21396 * 12 10 9 37 37 H 1.09004 * 109.47031 * 299.99620 * 13 12 10 38 38 H 1.08995 * 109.47111 * 59.99900 * 13 12 10 39 39 H 0.97001 * 119.99132 * 180.02562 * 17 16 14 40 40 H 1.09000 * 110.49136 * 93.88362 * 22 10 9 41 41 H 1.09004 * 110.48616 * 216.39155 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0141 -0.6845 1.1855 6 6 1.6525 -1.9719 1.3382 7 8 0.9521 -2.5090 0.5037 8 7 2.0675 -2.6651 2.4170 9 6 1.7316 -4.0696 2.6783 10 6 2.7472 -4.5454 3.7406 11 1 3.6201 -4.9990 3.2711 12 7 2.1197 -5.4766 4.6878 13 6 3.1338 -6.2634 5.4025 14 6 2.4540 -7.2055 6.3624 15 1 1.3765 -7.2182 6.4347 16 6 3.2076 -8.0505 7.1492 17 7 4.5198 -8.0346 7.0615 18 14 2.3650 -9.2177 8.3395 19 1 1.4700 -10.1323 7.5859 20 1 3.3901 -10.0132 9.0619 21 1 1.5652 -8.4362 9.3165 22 6 3.1213 -3.2164 4.4368 23 6 2.8422 -2.1587 3.3918 24 8 3.2577 -1.0203 3.4278 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6768 1.9564 0.8900 31 1 1.6767 -1.7488 -1.2494 32 1 1.6767 -0.2074 -2.1393 33 1 3.1300 -0.7209 -1.2496 34 1 1.8355 -4.6582 1.7668 35 1 0.7158 -4.1487 3.0655 36 1 1.4591 -6.0785 4.2194 37 1 3.7205 -6.8372 4.6851 38 1 3.7910 -5.5924 5.9555 39 1 5.0499 -8.6294 7.6148 40 1 2.4972 -3.0575 5.3162 41 1 4.1757 -3.2141 4.7130 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171679034.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:43 Heat of formation + Delta-G solvation = -111.293941 kcal Electronic energy + Delta-G solvation = -22889.664739 eV Core-core repulsion = 19384.026889 eV Total energy + Delta-G solvation = -3505.637850 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.70001 -39.95031 -37.47372 -36.70916 -34.86795 -34.15595 -32.64066 -30.47710 -27.84989 -27.62200 -27.61280 -26.08946 -23.82876 -22.16870 -21.33068 -20.74926 -19.26561 -17.96826 -17.21188 -16.83558 -16.48779 -15.86989 -15.41754 -14.98869 -14.80419 -14.62821 -14.35471 -13.98414 -13.76626 -13.41735 -13.22075 -13.09177 -12.70181 -12.39466 -12.22443 -12.13579 -12.12601 -11.74565 -11.71108 -11.69121 -11.32930 -11.00824 -10.77388 -10.70816 -10.58831 -10.49151 -10.04645 -9.91566 -9.67389 -9.31441 -8.58519 -7.64161 -6.12669 -4.15514 1.74372 1.76937 2.95767 3.28835 3.33540 3.35941 3.56042 4.23665 4.35942 4.46272 4.51307 4.52575 4.66045 4.75011 5.07107 5.22910 5.24087 5.28525 5.29812 5.44808 5.46923 5.52177 5.58353 5.60501 5.66466 5.76437 5.87711 5.97775 6.03011 6.08846 6.11384 6.25714 6.63010 7.04099 7.22505 7.62962 7.81081 7.93428 7.97628 8.12945 8.38721 8.92497 9.50089 10.98249 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.043595 B = 0.003048 C = 0.002961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.122544 B = 9182.911258 C = 9452.630348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.128 3.872 3 C -0.139 4.139 4 C -0.184 4.184 5 O -0.333 6.333 6 C 0.663 3.337 7 O -0.540 6.540 8 N -0.559 5.559 9 C 0.110 3.890 10 C 0.077 3.923 11 H 0.067 0.933 12 N -0.675 5.675 13 C 0.193 3.807 14 C -0.520 4.520 15 H 0.064 0.936 16 C 0.058 3.942 17 N -0.896 5.896 18 Si 0.901 3.099 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.276 1.276 22 C -0.143 4.143 23 C 0.523 3.477 24 O -0.479 6.479 25 H 0.061 0.939 26 H 0.072 0.928 27 H 0.086 0.914 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.068 0.932 31 H 0.086 0.914 32 H 0.072 0.928 33 H 0.061 0.939 34 H 0.093 0.907 35 H 0.098 0.902 36 H 0.338 0.662 37 H -0.008 1.008 38 H 0.033 0.967 39 H 0.263 0.737 40 H 0.127 0.873 41 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.178 14.159 -14.201 20.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.091 3.909 3 C -0.196 4.196 4 C -0.241 4.241 5 O -0.246 6.246 6 C 0.421 3.579 7 O -0.428 6.428 8 N -0.310 5.310 9 C -0.011 4.011 10 C -0.035 4.035 11 H 0.084 0.916 12 N -0.307 5.307 13 C 0.067 3.933 14 C -0.558 4.558 15 H 0.082 0.918 16 C -0.144 4.144 17 N -0.535 5.535 18 Si 0.728 3.272 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.201 1.201 22 C -0.183 4.183 23 C 0.313 3.687 24 O -0.349 6.349 25 H 0.080 0.920 26 H 0.091 0.909 27 H 0.105 0.895 28 H 0.087 0.913 29 H 0.099 0.901 30 H 0.087 0.913 31 H 0.105 0.895 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.112 0.888 35 H 0.116 0.884 36 H 0.156 0.844 37 H 0.009 0.991 38 H 0.051 0.949 39 H 0.073 0.927 40 H 0.145 0.855 41 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -5.062 15.138 -13.966 21.209 hybrid contribution -0.099 -1.333 -0.088 1.340 sum -5.162 13.805 -14.054 20.365 Atomic orbital electron populations 1.22521 0.93840 1.04995 1.02738 1.22228 0.94521 0.91990 0.82121 1.21832 1.02494 0.92178 1.03078 1.22523 1.01795 1.03316 0.96468 1.86584 1.70126 1.22135 1.45790 1.18039 0.77848 0.81068 0.80975 1.90905 1.39181 1.70571 1.42096 1.46311 1.49092 1.14980 1.20586 1.22558 1.01218 0.76928 1.00411 1.22398 0.95630 0.94151 0.91328 0.91559 1.60831 1.19369 1.23583 1.26915 1.19651 0.89616 0.91370 0.92637 1.21094 0.93650 1.19439 1.21626 0.91829 1.24978 0.94825 0.97343 0.97278 1.69942 1.04455 1.38752 1.40362 0.86520 0.79002 0.80656 0.80990 1.20222 1.21333 1.20100 1.22555 1.05595 0.92198 0.97974 1.21702 0.75723 0.88875 0.82412 1.90761 1.49453 1.19012 1.75669 0.91961 0.90900 0.89526 0.91303 0.90118 0.91286 0.89536 0.90901 0.91978 0.88849 0.88420 0.84411 0.99053 0.94925 0.92705 0.85490 0.87233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.87 8.37 37.16 0.31 -1.56 16 2 C 0.13 1.43 1.13 -90.62 -0.10 1.33 16 3 C -0.14 -1.21 8.85 37.16 0.33 -0.88 16 4 C -0.18 -1.87 8.37 37.16 0.31 -1.56 16 5 O -0.33 -4.91 8.31 -47.07 -0.39 -5.30 16 6 C 0.66 10.04 7.81 54.05 0.42 10.46 16 7 O -0.54 -8.32 12.10 -19.25 -0.23 -8.55 16 8 N -0.56 -8.15 2.99 -119.59 -0.36 -8.51 16 9 C 0.11 1.41 6.35 -3.12 -0.02 1.39 16 10 C 0.08 1.13 3.43 -66.08 -0.23 0.90 16 11 H 0.07 0.99 7.92 -51.93 -0.41 0.58 16 12 N -0.67 -12.17 6.28 -106.27 -0.67 -12.84 16 13 C 0.19 4.53 5.31 -4.98 -0.03 4.51 16 14 C -0.52 -13.66 9.32 -34.44 -0.32 -13.98 16 15 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 16 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 17 N -0.90 -25.52 13.29 55.43 0.74 -24.78 16 18 Si 0.90 20.77 29.54 -169.99 -5.02 15.75 16 19 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 20 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 22 C -0.14 -2.07 6.54 -26.75 -0.17 -2.25 16 23 C 0.52 8.11 7.95 -10.86 -0.09 8.03 16 24 O -0.48 -8.63 16.49 -14.79 -0.24 -8.88 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.09 1.05 5.88 -51.93 -0.31 0.74 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.09 1.05 5.88 -51.93 -0.31 0.74 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.09 1.11 8.10 -51.93 -0.42 0.69 16 35 H 0.10 1.20 8.07 -51.93 -0.42 0.78 16 36 H 0.34 5.68 8.51 -39.29 -0.33 5.34 16 37 H -0.01 -0.21 8.09 -51.93 -0.42 -0.63 16 38 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.26 7.13 8.31 -40.82 -0.34 6.80 16 40 H 0.13 1.88 8.08 -51.93 -0.42 1.46 16 41 H 0.11 1.55 8.14 -51.93 -0.42 1.12 16 LS Contribution 339.14 15.07 5.11 5.11 Total: -1.00 -30.58 339.14 -7.13 -37.71 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -6.39 Total: 2.44 kcal Atomic # 6 Polarization: 7.53 SS G_CDS: 0.32 Total: 7.85 kcal Atomic # 7 Polarization: -45.84 SS G_CDS: -0.29 Total: -46.13 kcal Atomic # 8 Polarization: -21.86 SS G_CDS: -0.87 Total: -22.73 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.58 -7.13 -37.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171679034.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.580 kcal (2) G-P(sol) polarization free energy of solvation -30.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds