Wall clock time and date at job start Tue Mar 31 2020 05:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47410 * 2 1 4 4 C 1.53000 * 109.47265 * 240.00205 * 2 1 3 5 5 O 1.45199 * 109.47466 * 120.00129 * 2 1 3 6 6 C 1.34592 * 117.00045 * 60.00057 * 5 2 1 7 7 O 1.21466 * 119.99465 * 0.02562 * 6 5 2 8 8 N 1.34774 * 120.00404 * 180.02562 * 6 5 2 9 9 C 1.46759 * 124.35066 * 180.02562 * 8 6 5 10 10 C 1.54482 * 105.47110 * 162.96414 * 9 8 6 11 11 H 1.08998 * 111.00313 * 267.28018 * 10 9 8 12 12 N 1.46905 * 110.96869 * 143.53440 * 10 9 8 13 13 C 1.46901 * 110.99870 * 161.16684 * 12 10 9 14 14 C 1.50697 * 109.46943 * 180.02562 * 13 12 10 15 15 H 1.08000 * 120.00162 * 359.97438 * 14 13 12 16 16 C 1.37883 * 120.00023 * 180.02562 * 14 13 12 17 17 N 1.31517 * 119.99532 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 120.00003 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46907 * 60.00117 * 18 16 14 20 20 H 1.48504 * 109.47065 * 179.97438 * 18 16 14 21 21 H 1.48494 * 109.47302 * 300.00070 * 18 16 14 22 22 C 1.54623 * 101.76670 * 25.41508 * 10 9 8 23 23 C 1.34423 * 124.34663 * 0.02562 * 8 6 5 24 24 O 1.21236 * 124.94095 * 0.39021 * 23 8 6 25 25 H 1.09001 * 109.46789 * 299.99552 * 1 2 3 26 26 H 1.08997 * 109.47396 * 59.99609 * 1 2 3 27 27 H 1.09001 * 109.46989 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47198 * 180.02562 * 3 2 1 29 29 H 1.08997 * 109.47160 * 300.00536 * 3 2 1 30 30 H 1.09003 * 109.47069 * 59.99999 * 3 2 1 31 31 H 1.08993 * 109.47347 * 300.00172 * 4 2 1 32 32 H 1.09005 * 109.47337 * 59.99566 * 4 2 1 33 33 H 1.09001 * 109.47936 * 179.97438 * 4 2 1 34 34 H 1.08993 * 110.24890 * 43.96285 * 9 8 6 35 35 H 1.08998 * 110.24325 * 281.96113 * 9 8 6 36 36 H 1.00901 * 110.99869 * 37.21396 * 12 10 9 37 37 H 1.09004 * 109.47031 * 299.99620 * 13 12 10 38 38 H 1.08995 * 109.47111 * 59.99900 * 13 12 10 39 39 H 0.97001 * 119.99132 * 180.02562 * 17 16 14 40 40 H 1.09000 * 110.49136 * 93.88362 * 22 10 9 41 41 H 1.09004 * 110.48616 * 216.39155 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0141 -0.6845 1.1855 6 6 1.6525 -1.9719 1.3382 7 8 0.9521 -2.5090 0.5037 8 7 2.0675 -2.6651 2.4170 9 6 1.7316 -4.0696 2.6783 10 6 2.7472 -4.5454 3.7406 11 1 3.6201 -4.9990 3.2711 12 7 2.1197 -5.4766 4.6878 13 6 3.1338 -6.2634 5.4025 14 6 2.4540 -7.2055 6.3624 15 1 1.3765 -7.2182 6.4347 16 6 3.2076 -8.0505 7.1492 17 7 4.5198 -8.0346 7.0615 18 14 2.3650 -9.2177 8.3395 19 1 1.4700 -10.1323 7.5859 20 1 3.3901 -10.0132 9.0619 21 1 1.5652 -8.4362 9.3165 22 6 3.1213 -3.2164 4.4368 23 6 2.8422 -2.1587 3.3918 24 8 3.2577 -1.0203 3.4278 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6768 1.9564 0.8900 31 1 1.6767 -1.7488 -1.2494 32 1 1.6767 -0.2074 -2.1393 33 1 3.1300 -0.7209 -1.2496 34 1 1.8355 -4.6582 1.7668 35 1 0.7158 -4.1487 3.0655 36 1 1.4591 -6.0785 4.2194 37 1 3.7205 -6.8372 4.6851 38 1 3.7910 -5.5924 5.9555 39 1 5.0499 -8.6294 7.6148 40 1 2.4972 -3.0575 5.3162 41 1 4.1757 -3.2141 4.7130 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171679034.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:43 Heat of formation + Delta-G solvation = -131.108440 kcal Electronic energy + Delta-G solvation = -22890.523960 eV Core-core repulsion = 19384.026889 eV Total energy + Delta-G solvation = -3506.497071 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.86304 -41.07669 -38.68085 -37.95587 -36.29511 -35.21669 -34.42707 -31.93548 -29.21036 -28.41442 -28.35430 -27.75437 -25.06646 -23.88086 -22.50231 -22.00633 -20.32603 -19.17479 -18.53945 -18.35573 -17.82061 -17.02590 -16.68811 -16.44644 -16.15140 -15.89745 -15.46127 -15.26069 -14.88893 -14.74436 -14.55058 -14.30895 -13.96178 -13.49899 -13.42200 -13.17787 -12.98236 -12.95542 -12.93592 -12.71461 -12.59036 -12.54017 -12.41775 -12.20415 -11.88192 -11.57728 -11.50880 -11.28519 -11.13472 -10.83856 -10.60376 -9.22713 -8.18107 -6.27447 0.53183 0.69305 1.46961 1.48702 1.56394 1.76790 2.43762 2.48243 3.02861 3.17062 3.28468 3.48948 3.65645 3.73169 3.87814 3.89908 4.22075 4.29034 4.48597 4.49668 4.58090 4.64305 4.70692 4.71876 4.76916 4.79957 4.82303 4.91623 5.09121 5.19277 5.21438 5.22625 5.27581 5.32773 5.49008 5.66348 6.05467 6.40366 6.57427 6.70640 6.80570 6.93069 7.43188 8.92895 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.043595 B = 0.003048 C = 0.002961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.122544 B = 9182.911258 C = 9452.630348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.112 3.888 3 C -0.135 4.135 4 C -0.179 4.179 5 O -0.350 6.350 6 C 0.660 3.340 7 O -0.544 6.544 8 N -0.559 5.559 9 C 0.118 3.882 10 C 0.080 3.920 11 H 0.068 0.932 12 N -0.669 5.669 13 C 0.208 3.792 14 C -0.534 4.534 15 H 0.068 0.932 16 C 0.004 3.996 17 N -0.933 5.933 18 Si 0.966 3.034 19 H -0.267 1.267 20 H -0.288 1.288 21 H -0.270 1.270 22 C -0.137 4.137 23 C 0.530 3.470 24 O -0.506 6.506 25 H 0.059 0.941 26 H 0.101 0.899 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.112 0.888 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.100 0.900 33 H 0.058 0.942 34 H 0.109 0.891 35 H 0.109 0.891 36 H 0.348 0.652 37 H -0.029 1.029 38 H 0.011 0.989 39 H 0.264 0.736 40 H 0.127 0.873 41 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.492 14.581 -15.024 21.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.077 3.923 3 C -0.192 4.192 4 C -0.236 4.236 5 O -0.264 6.264 6 C 0.417 3.583 7 O -0.433 6.433 8 N -0.309 5.309 9 C -0.002 4.002 10 C -0.031 4.031 11 H 0.086 0.914 12 N -0.301 5.301 13 C 0.080 3.920 14 C -0.572 4.572 15 H 0.086 0.914 16 C -0.195 4.195 17 N -0.573 5.573 18 Si 0.791 3.209 19 H -0.192 1.192 20 H -0.214 1.214 21 H -0.195 1.195 22 C -0.177 4.177 23 C 0.320 3.680 24 O -0.379 6.379 25 H 0.078 0.922 26 H 0.119 0.881 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.130 0.870 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.119 0.881 33 H 0.077 0.923 34 H 0.127 0.873 35 H 0.128 0.872 36 H 0.167 0.833 37 H -0.012 1.012 38 H 0.029 0.971 39 H 0.072 0.928 40 H 0.145 0.855 41 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -6.408 15.563 -14.815 22.422 hybrid contribution 0.291 -1.393 0.086 1.426 sum -6.117 14.169 -14.729 21.334 Atomic orbital electron populations 1.22478 0.93126 1.03934 1.04017 1.22705 0.95300 0.92972 0.81350 1.21880 1.02215 0.90671 1.04396 1.22480 1.01583 1.02294 0.97218 1.86595 1.70424 1.21858 1.47560 1.18137 0.77833 0.81387 0.80902 1.90906 1.39373 1.70794 1.42186 1.46353 1.48783 1.15422 1.20376 1.22535 1.00979 0.76291 1.00403 1.22330 0.96145 0.93361 0.91296 0.91432 1.60615 1.18203 1.23079 1.28248 1.19279 0.89938 0.90714 0.92064 1.21529 0.94050 1.19713 1.21892 0.91387 1.25847 0.95387 0.99126 0.99105 1.70065 1.05907 1.39814 1.41502 0.85481 0.77971 0.78605 0.78815 1.19182 1.21362 1.19500 1.22494 1.05819 0.91704 0.97693 1.21737 0.75293 0.88467 0.82490 1.90745 1.50660 1.20137 1.76324 0.92225 0.88080 0.91640 0.91784 0.86968 0.91752 0.91640 0.88084 0.92255 0.87302 0.87241 0.83296 1.01167 0.97135 0.92753 0.85481 0.86975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.35 8.37 71.98 0.60 -2.75 16 2 C 0.11 2.35 1.13 -10.79 -0.01 2.34 16 3 C -0.13 -2.09 8.85 71.98 0.64 -1.45 16 4 C -0.18 -3.36 8.37 71.98 0.60 -2.76 16 5 O -0.35 -10.17 8.31 -48.43 -0.40 -10.58 16 6 C 0.66 19.56 7.81 129.79 1.01 20.57 16 7 O -0.54 -16.36 12.10 19.95 0.24 -16.12 16 8 N -0.56 -15.86 2.99 -881.34 -2.63 -18.49 16 9 C 0.12 2.87 6.35 86.83 0.55 3.42 16 10 C 0.08 2.29 3.43 45.97 0.16 2.45 16 11 H 0.07 1.98 7.92 -2.39 -0.02 1.96 16 12 N -0.67 -23.61 6.28 -490.12 -3.08 -26.69 16 13 C 0.21 9.79 5.31 85.56 0.45 10.25 16 14 C -0.53 -27.91 9.32 25.60 0.24 -27.67 16 15 H 0.07 3.42 7.81 -2.91 -0.02 3.40 16 16 C 0.00 0.21 5.46 84.66 0.46 0.67 16 17 N -0.93 -53.64 13.29 21.45 0.28 -53.35 16 18 Si 0.97 42.22 29.54 68.60 2.03 44.25 16 19 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 20 H -0.29 -12.50 7.11 99.48 0.71 -11.79 16 21 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 22 C -0.14 -3.92 6.54 30.58 0.20 -3.72 16 23 C 0.53 16.23 7.95 87.90 0.70 16.92 16 24 O -0.51 -18.28 16.49 16.59 0.27 -18.00 16 25 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.06 1.53 5.88 -2.39 -0.01 1.51 16 28 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.06 1.53 5.88 -2.39 -0.01 1.51 16 32 H 0.10 1.29 8.14 -2.38 -0.02 1.27 16 33 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.11 2.37 8.10 -2.39 -0.02 2.35 16 35 H 0.11 2.46 8.07 -2.39 -0.02 2.44 16 36 H 0.35 11.21 8.51 -89.69 -0.76 10.45 16 37 H -0.03 -1.49 8.09 -2.39 -0.02 -1.51 16 38 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 39 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 40 H 0.13 3.69 8.08 -2.39 -0.02 3.68 16 41 H 0.11 3.17 8.14 -2.39 -0.02 3.15 16 Total: -1.00 -65.37 339.14 2.58 -62.79 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: 0.26 Total: 17.91 kcal Atomic # 6 Polarization: 12.67 SS G_CDS: 5.61 Total: 18.28 kcal Atomic # 7 Polarization: -93.11 SS G_CDS: -5.43 Total: -98.53 kcal Atomic # 8 Polarization: -44.81 SS G_CDS: 0.11 Total: -44.70 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.25 kcal Total: -65.37 2.58 -62.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171679034.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.320 kcal (2) G-P(sol) polarization free energy of solvation -65.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds