Wall clock time and date at job start Tue Mar 31 2020 05:42:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.46936 * 2 1 4 4 C 1.53002 * 109.47178 * 239.99844 * 2 1 3 5 5 O 1.45200 * 109.47145 * 119.99808 * 2 1 3 6 6 C 1.34594 * 117.00026 * 59.99903 * 5 2 1 7 7 O 1.21460 * 119.99788 * 0.02562 * 6 5 2 8 8 N 1.34770 * 120.00212 * 179.97438 * 6 5 2 9 9 C 1.46765 * 124.35466 * 180.02562 * 8 6 5 10 10 C 1.54831 * 105.49704 * 197.06210 * 9 8 6 11 11 H 1.08994 * 111.01534 * 92.61619 * 10 9 8 12 12 N 1.46899 * 111.07568 * 216.48812 * 10 9 8 13 13 C 1.46901 * 110.99816 * 198.69925 * 12 10 9 14 14 C 1.50704 * 109.47241 * 179.97438 * 13 12 10 15 15 H 1.08007 * 119.99489 * 0.02562 * 14 13 12 16 16 C 1.37873 * 120.00350 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99479 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 120.00242 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47178 * 90.00067 * 18 16 14 20 20 H 1.48500 * 109.47097 * 209.99980 * 18 16 14 21 21 H 1.48502 * 109.46968 * 329.99689 * 18 16 14 22 22 C 1.54631 * 101.60220 * 334.56264 * 10 9 8 23 23 C 1.34418 * 124.34956 * 0.03039 * 8 6 5 24 24 O 1.21230 * 124.94078 * 359.53000 * 23 8 6 25 25 H 1.08995 * 109.47330 * 299.99816 * 1 2 3 26 26 H 1.08994 * 109.46870 * 60.00560 * 1 2 3 27 27 H 1.09002 * 109.47014 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47150 * 179.97438 * 3 2 1 29 29 H 1.09003 * 109.47267 * 299.99842 * 3 2 1 30 30 H 1.08996 * 109.47481 * 59.99878 * 3 2 1 31 31 H 1.08999 * 109.47062 * 299.99781 * 4 2 1 32 32 H 1.08998 * 109.47151 * 59.99721 * 4 2 1 33 33 H 1.08998 * 109.47009 * 179.97438 * 4 2 1 34 34 H 1.09001 * 110.23936 * 316.03860 * 9 8 6 35 35 H 1.08998 * 110.24401 * 77.94406 * 9 8 6 36 36 H 1.00896 * 111.00258 * 74.74542 * 12 10 9 37 37 H 1.08998 * 109.46658 * 299.99906 * 13 12 10 38 38 H 1.08994 * 109.47094 * 59.99923 * 13 12 10 39 39 H 0.97001 * 119.99587 * 180.02562 * 17 16 14 40 40 H 1.09002 * 110.48855 * 266.08223 * 22 10 9 41 41 H 1.08998 * 110.48570 * 143.57284 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6524 -1.9718 1.3384 7 8 0.9520 -2.5090 0.5039 8 7 2.0682 -2.6652 2.4166 9 6 1.7323 -4.0698 2.6781 10 6 2.0364 -4.2953 4.1794 11 1 1.1482 -4.1256 4.7879 12 7 2.5814 -5.6395 4.4119 13 6 2.4571 -6.0207 5.8251 14 6 3.0249 -7.4024 6.0246 15 1 3.4372 -7.9430 5.1854 16 6 3.0189 -7.9758 7.2784 17 7 2.5172 -7.3172 8.3002 18 14 3.7233 -9.6881 7.5256 19 1 5.1686 -9.5866 7.8512 20 1 3.0105 -10.3601 8.6417 21 1 3.5506 -10.4789 6.2806 22 6 3.1057 -3.2107 4.4465 23 6 2.8437 -2.1592 3.3909 24 8 3.2714 -1.0252 3.4194 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8899 31 1 1.6768 -1.7490 -1.2492 32 1 1.6767 -0.2075 -2.1392 33 1 3.1300 -0.7209 -1.2494 34 1 0.6762 -4.2488 2.4766 35 1 2.3494 -4.7257 2.0640 36 1 3.5405 -5.6989 4.1044 37 1 3.0055 -5.3095 6.4428 38 1 1.4055 -6.0156 6.1117 39 1 2.5134 -7.7205 9.1824 40 1 4.1071 -3.6256 4.3310 41 1 2.9811 -2.7896 5.4440 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171679035.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:46 Heat of formation + Delta-G solvation = -111.847370 kcal Electronic energy + Delta-G solvation = -22895.029253 eV Core-core repulsion = 19389.367404 eV Total energy + Delta-G solvation = -3505.661849 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.70859 -39.97568 -37.47485 -36.75075 -34.90233 -34.15399 -32.66970 -30.39395 -27.76129 -27.61830 -27.60011 -26.15228 -23.80983 -22.10788 -21.48774 -20.86612 -19.26519 -18.02838 -17.15648 -16.85871 -16.49672 -15.84313 -15.41667 -15.04374 -14.73822 -14.46356 -14.28583 -14.15432 -13.79217 -13.70964 -13.16335 -12.71866 -12.53477 -12.47696 -12.37413 -12.14490 -12.12571 -11.80048 -11.70458 -11.68610 -11.37713 -11.09912 -10.86932 -10.73510 -10.58651 -10.50841 -10.10840 -9.94702 -9.63972 -9.32727 -8.59661 -7.61362 -6.13429 -4.16232 1.72131 1.77286 2.94402 3.26739 3.33705 3.37439 3.54788 4.19825 4.36412 4.46480 4.52099 4.53013 4.66090 4.79736 5.03800 5.22755 5.23554 5.27663 5.30019 5.44048 5.46706 5.51677 5.53836 5.60159 5.60874 5.76937 5.87976 5.90769 6.03397 6.06525 6.09966 6.22896 6.63026 7.01132 7.22532 7.62035 7.78231 7.94279 7.96478 8.11608 8.37538 8.91911 9.49510 10.97449 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.043713 B = 0.003046 C = 0.002961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.391161 B = 9190.611472 C = 9454.252993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.128 3.872 3 C -0.139 4.139 4 C -0.184 4.184 5 O -0.334 6.334 6 C 0.663 3.337 7 O -0.537 6.537 8 N -0.561 5.561 9 C 0.115 3.885 10 C 0.085 3.915 11 H 0.103 0.897 12 N -0.673 5.673 13 C 0.194 3.806 14 C -0.519 4.519 15 H 0.064 0.936 16 C 0.058 3.942 17 N -0.896 5.896 18 Si 0.900 3.100 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.272 1.272 22 C -0.186 4.186 23 C 0.523 3.477 24 O -0.479 6.479 25 H 0.061 0.939 26 H 0.072 0.928 27 H 0.086 0.914 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.068 0.932 31 H 0.086 0.914 32 H 0.072 0.928 33 H 0.061 0.939 34 H 0.098 0.902 35 H 0.094 0.906 36 H 0.336 0.664 37 H -0.007 1.007 38 H 0.032 0.968 39 H 0.263 0.737 40 H 0.115 0.885 41 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.787 14.069 -15.016 20.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.091 3.909 3 C -0.196 4.196 4 C -0.241 4.241 5 O -0.248 6.248 6 C 0.420 3.580 7 O -0.425 6.425 8 N -0.311 5.311 9 C -0.006 4.006 10 C -0.028 4.028 11 H 0.121 0.879 12 N -0.303 5.303 13 C 0.068 3.932 14 C -0.558 4.558 15 H 0.082 0.918 16 C -0.144 4.144 17 N -0.535 5.535 18 Si 0.728 3.272 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.197 1.197 22 C -0.228 4.228 23 C 0.313 3.687 24 O -0.350 6.350 25 H 0.080 0.920 26 H 0.091 0.909 27 H 0.105 0.895 28 H 0.087 0.913 29 H 0.099 0.901 30 H 0.087 0.913 31 H 0.105 0.895 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.116 0.884 35 H 0.113 0.887 36 H 0.155 0.845 37 H 0.011 0.989 38 H 0.050 0.950 39 H 0.072 0.928 40 H 0.133 0.867 41 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -2.407 14.295 -15.345 21.109 hybrid contribution 0.984 -0.369 0.602 1.211 sum -1.424 13.927 -14.742 20.330 Atomic orbital electron populations 1.22523 0.93831 1.05025 1.02731 1.22225 0.94528 0.91969 0.82134 1.21831 1.02467 0.92208 1.03070 1.22522 1.01768 1.03353 0.96456 1.86580 1.70151 1.22220 1.45806 1.18028 0.77873 0.81001 0.81068 1.90910 1.39082 1.70587 1.41905 1.46374 1.49005 1.15206 1.20507 1.22563 1.03663 0.76196 0.98141 1.22597 0.97737 0.89316 0.93174 0.87868 1.60589 1.24854 1.19567 1.25240 1.19640 0.97542 0.95623 0.80421 1.21133 1.39786 1.00703 0.94167 0.91795 1.24974 0.95412 0.98154 0.95890 1.69949 1.45474 1.37916 1.00148 0.86465 0.78914 0.83958 0.77893 1.20690 1.21216 1.19712 1.23360 1.03323 0.96978 0.99137 1.21539 0.75989 0.88504 0.82710 1.90760 1.48904 1.19134 1.76169 0.91973 0.90902 0.89494 0.91332 0.90108 0.91318 0.89489 0.90902 0.92005 0.88408 0.88732 0.84520 0.98872 0.94965 0.92758 0.86723 0.86969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.88 8.37 37.16 0.31 -1.57 16 2 C 0.13 1.43 1.13 -90.62 -0.10 1.33 16 3 C -0.14 -1.21 8.85 37.16 0.33 -0.88 16 4 C -0.18 -1.87 8.37 37.16 0.31 -1.56 16 5 O -0.33 -4.91 8.31 -47.08 -0.39 -5.30 16 6 C 0.66 10.02 7.81 54.05 0.42 10.44 16 7 O -0.54 -8.35 12.10 -19.24 -0.23 -8.59 16 8 N -0.56 -8.08 2.99 -119.38 -0.36 -8.44 16 9 C 0.11 1.52 6.60 -2.93 -0.02 1.50 16 10 C 0.08 1.23 3.45 -65.89 -0.23 1.00 16 11 H 0.10 1.52 7.92 -51.93 -0.41 1.11 16 12 N -0.67 -12.06 6.33 -106.07 -0.67 -12.73 16 13 C 0.19 4.50 5.31 -4.97 -0.03 4.47 16 14 C -0.52 -13.61 9.32 -34.44 -0.32 -13.93 16 15 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 16 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 17 N -0.90 -25.41 13.29 55.43 0.74 -24.67 16 18 Si 0.90 20.72 29.54 -169.99 -5.02 15.70 16 19 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 20 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 22 C -0.19 -2.53 6.50 -26.74 -0.17 -2.70 16 23 C 0.52 7.91 7.95 -10.86 -0.09 7.82 16 24 O -0.48 -8.52 16.49 -14.78 -0.24 -8.77 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.09 1.06 5.88 -51.93 -0.31 0.75 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.09 1.06 5.88 -51.93 -0.31 0.75 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.10 1.25 8.10 -51.93 -0.42 0.83 16 35 H 0.09 1.20 8.08 -51.93 -0.42 0.78 16 36 H 0.34 5.65 8.20 -39.29 -0.32 5.33 16 37 H -0.01 -0.16 8.14 -51.93 -0.42 -0.58 16 38 H 0.03 0.81 8.09 -51.93 -0.42 0.39 16 39 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 40 H 0.11 1.47 7.65 -51.93 -0.40 1.08 16 41 H 0.11 1.51 8.14 -51.93 -0.42 1.09 16 LS Contribution 338.67 15.07 5.10 5.10 Total: -1.00 -30.51 338.67 -7.11 -37.62 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -6.35 Total: 2.69 kcal Atomic # 6 Polarization: 7.06 SS G_CDS: 0.32 Total: 7.38 kcal Atomic # 7 Polarization: -45.55 SS G_CDS: -0.29 Total: -45.84 kcal Atomic # 8 Polarization: -21.78 SS G_CDS: -0.87 Total: -22.65 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.51 -7.11 -37.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171679035.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.227 kcal (2) G-P(sol) polarization free energy of solvation -30.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds