Wall clock time and date at job start Tue Mar 31 2020 05:42:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.46936 * 2 1 4 4 C 1.53002 * 109.47178 * 239.99844 * 2 1 3 5 5 O 1.45200 * 109.47145 * 119.99808 * 2 1 3 6 6 C 1.34594 * 117.00026 * 59.99903 * 5 2 1 7 7 O 1.21460 * 119.99788 * 0.02562 * 6 5 2 8 8 N 1.34770 * 120.00212 * 179.97438 * 6 5 2 9 9 C 1.46765 * 124.35466 * 180.02562 * 8 6 5 10 10 C 1.54831 * 105.49704 * 197.06210 * 9 8 6 11 11 H 1.08994 * 111.01534 * 92.61619 * 10 9 8 12 12 N 1.46899 * 111.07568 * 216.48812 * 10 9 8 13 13 C 1.46901 * 110.99816 * 198.69925 * 12 10 9 14 14 C 1.50704 * 109.47241 * 179.97438 * 13 12 10 15 15 H 1.08007 * 119.99489 * 0.02562 * 14 13 12 16 16 C 1.37873 * 120.00350 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99479 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 120.00242 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47178 * 90.00067 * 18 16 14 20 20 H 1.48500 * 109.47097 * 209.99980 * 18 16 14 21 21 H 1.48502 * 109.46968 * 329.99689 * 18 16 14 22 22 C 1.54631 * 101.60220 * 334.56264 * 10 9 8 23 23 C 1.34418 * 124.34956 * 0.03039 * 8 6 5 24 24 O 1.21230 * 124.94078 * 359.53000 * 23 8 6 25 25 H 1.08995 * 109.47330 * 299.99816 * 1 2 3 26 26 H 1.08994 * 109.46870 * 60.00560 * 1 2 3 27 27 H 1.09002 * 109.47014 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47150 * 179.97438 * 3 2 1 29 29 H 1.09003 * 109.47267 * 299.99842 * 3 2 1 30 30 H 1.08996 * 109.47481 * 59.99878 * 3 2 1 31 31 H 1.08999 * 109.47062 * 299.99781 * 4 2 1 32 32 H 1.08998 * 109.47151 * 59.99721 * 4 2 1 33 33 H 1.08998 * 109.47009 * 179.97438 * 4 2 1 34 34 H 1.09001 * 110.23936 * 316.03860 * 9 8 6 35 35 H 1.08998 * 110.24401 * 77.94406 * 9 8 6 36 36 H 1.00896 * 111.00258 * 74.74542 * 12 10 9 37 37 H 1.08998 * 109.46658 * 299.99906 * 13 12 10 38 38 H 1.08994 * 109.47094 * 59.99923 * 13 12 10 39 39 H 0.97001 * 119.99587 * 180.02562 * 17 16 14 40 40 H 1.09002 * 110.48855 * 266.08223 * 22 10 9 41 41 H 1.08998 * 110.48570 * 143.57284 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6524 -1.9718 1.3384 7 8 0.9520 -2.5090 0.5039 8 7 2.0682 -2.6652 2.4166 9 6 1.7323 -4.0698 2.6781 10 6 2.0364 -4.2953 4.1794 11 1 1.1482 -4.1256 4.7879 12 7 2.5814 -5.6395 4.4119 13 6 2.4571 -6.0207 5.8251 14 6 3.0249 -7.4024 6.0246 15 1 3.4372 -7.9430 5.1854 16 6 3.0189 -7.9758 7.2784 17 7 2.5172 -7.3172 8.3002 18 14 3.7233 -9.6881 7.5256 19 1 5.1686 -9.5866 7.8512 20 1 3.0105 -10.3601 8.6417 21 1 3.5506 -10.4789 6.2806 22 6 3.1057 -3.2107 4.4465 23 6 2.8437 -2.1592 3.3909 24 8 3.2714 -1.0252 3.4194 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8899 31 1 1.6768 -1.7490 -1.2492 32 1 1.6767 -0.2075 -2.1392 33 1 3.1300 -0.7209 -1.2494 34 1 0.6762 -4.2488 2.4766 35 1 2.3494 -4.7257 2.0640 36 1 3.5405 -5.6989 4.1044 37 1 3.0055 -5.3095 6.4428 38 1 1.4055 -6.0156 6.1117 39 1 2.5134 -7.7205 9.1824 40 1 4.1071 -3.6256 4.3310 41 1 2.9811 -2.7896 5.4440 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171679035.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:46 Heat of formation + Delta-G solvation = -131.567070 kcal Electronic energy + Delta-G solvation = -22895.884363 eV Core-core repulsion = 19389.367404 eV Total energy + Delta-G solvation = -3506.516959 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.86574 -41.09386 -38.67447 -37.99003 -36.30784 -35.21304 -34.44836 -31.85170 -29.05040 -28.41568 -28.35510 -27.83468 -25.05034 -23.81256 -22.71023 -22.02763 -20.32434 -19.23446 -18.50834 -18.31896 -17.83097 -17.07111 -16.58630 -16.40388 -16.18501 -15.63231 -15.49244 -15.40642 -15.16390 -14.58556 -14.34031 -14.29147 -13.96478 -13.47745 -13.42079 -13.18254 -12.99371 -12.98329 -12.94935 -12.72617 -12.61145 -12.53950 -12.41808 -12.30304 -11.99784 -11.58441 -11.50859 -11.26863 -11.19383 -10.80490 -10.61120 -9.17249 -8.17965 -6.27093 0.52085 0.70125 1.46311 1.47624 1.58355 1.76816 2.43893 2.47832 3.02111 3.17278 3.29503 3.56938 3.65637 3.72966 3.87126 3.88896 4.08973 4.33991 4.43315 4.49874 4.57889 4.62973 4.71633 4.76145 4.76787 4.80654 4.82128 4.86751 5.08633 5.17700 5.21430 5.22504 5.27952 5.35088 5.49483 5.66208 6.05343 6.41351 6.57342 6.69598 6.81616 6.93449 7.43537 8.93041 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.043713 B = 0.003046 C = 0.002961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.391161 B = 9190.611472 C = 9454.252993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.113 3.887 3 C -0.134 4.134 4 C -0.178 4.178 5 O -0.351 6.351 6 C 0.659 3.341 7 O -0.544 6.544 8 N -0.560 5.560 9 C 0.124 3.876 10 C 0.088 3.912 11 H 0.101 0.899 12 N -0.668 5.668 13 C 0.208 3.792 14 C -0.533 4.533 15 H 0.067 0.933 16 C 0.004 3.996 17 N -0.932 5.932 18 Si 0.965 3.035 19 H -0.274 1.274 20 H -0.287 1.287 21 H -0.265 1.265 22 C -0.175 4.175 23 C 0.529 3.471 24 O -0.508 6.508 25 H 0.058 0.942 26 H 0.100 0.900 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.112 0.888 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.100 0.900 33 H 0.059 0.941 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.346 0.654 37 H -0.022 1.022 38 H 0.008 0.992 39 H 0.264 0.736 40 H 0.127 0.873 41 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.465 14.192 -16.437 21.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.077 3.923 3 C -0.191 4.191 4 C -0.236 4.236 5 O -0.265 6.265 6 C 0.417 3.583 7 O -0.432 6.432 8 N -0.310 5.310 9 C 0.004 3.996 10 C -0.024 4.024 11 H 0.119 0.881 12 N -0.299 5.299 13 C 0.081 3.919 14 C -0.571 4.571 15 H 0.085 0.915 16 C -0.194 4.194 17 N -0.572 5.572 18 Si 0.791 3.209 19 H -0.200 1.200 20 H -0.213 1.213 21 H -0.189 1.189 22 C -0.217 4.217 23 C 0.319 3.681 24 O -0.380 6.380 25 H 0.078 0.922 26 H 0.119 0.881 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.130 0.870 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.119 0.881 33 H 0.078 0.922 34 H 0.123 0.877 35 H 0.123 0.877 36 H 0.165 0.835 37 H -0.005 1.005 38 H 0.026 0.974 39 H 0.072 0.928 40 H 0.145 0.855 41 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -2.086 14.421 -16.802 22.240 hybrid contribution 0.850 -0.335 0.965 1.329 sum -1.236 14.086 -15.837 21.231 Atomic orbital electron populations 1.22481 0.93206 1.03915 1.04001 1.22700 0.95247 0.92985 0.81388 1.21877 1.02227 0.90651 1.04376 1.22477 1.01608 1.02279 0.97192 1.86592 1.70428 1.21890 1.47553 1.18149 0.77825 0.81328 0.81036 1.90909 1.39364 1.70847 1.42116 1.46416 1.48709 1.15497 1.20366 1.22485 1.04331 0.75847 0.96975 1.22509 0.97725 0.87874 0.94272 0.88081 1.60385 1.25698 1.21871 1.21927 1.19262 0.95387 0.94336 0.82961 1.21559 1.39332 1.01958 0.94276 0.91489 1.25828 0.95845 1.01970 0.95786 1.70066 1.46926 1.39659 1.00581 0.85438 0.78273 0.79394 0.77834 1.19981 1.21271 1.18926 1.23282 1.03528 0.96079 0.98832 1.21669 0.75444 0.88181 0.82799 1.90746 1.50133 1.20304 1.76825 0.92248 0.88087 0.91683 0.91739 0.86975 0.91796 0.91672 0.88101 0.92188 0.87704 0.87692 0.83492 1.00467 0.97423 0.92762 0.85504 0.86694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.41 8.37 71.98 0.60 -2.81 16 2 C 0.11 2.36 1.13 -10.79 -0.01 2.35 16 3 C -0.13 -2.08 8.85 71.98 0.64 -1.44 16 4 C -0.18 -3.37 8.37 71.98 0.60 -2.76 16 5 O -0.35 -10.16 8.31 -48.45 -0.40 -10.56 16 6 C 0.66 19.63 7.81 129.79 1.01 20.64 16 7 O -0.54 -16.67 12.10 19.97 0.24 -16.43 16 8 N -0.56 -15.75 2.99 -880.68 -2.63 -18.38 16 9 C 0.12 3.11 6.60 86.95 0.57 3.69 16 10 C 0.09 2.49 3.45 46.10 0.16 2.65 16 11 H 0.10 2.94 7.92 -2.39 -0.02 2.92 16 12 N -0.67 -23.40 6.33 -489.50 -3.10 -26.49 16 13 C 0.21 9.69 5.31 85.56 0.45 10.15 16 14 C -0.53 -27.75 9.32 25.60 0.24 -27.51 16 15 H 0.07 3.37 7.81 -2.91 -0.02 3.35 16 16 C 0.00 0.23 5.46 84.65 0.46 0.69 16 17 N -0.93 -53.29 13.29 21.45 0.28 -53.01 16 18 Si 0.97 42.14 29.54 68.60 2.03 44.17 16 19 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 20 H -0.29 -12.46 7.11 99.48 0.71 -11.75 16 21 H -0.26 -11.14 7.11 99.48 0.71 -10.44 16 22 C -0.18 -4.62 6.50 30.59 0.20 -4.42 16 23 C 0.53 15.66 7.95 87.90 0.70 16.36 16 24 O -0.51 -17.93 16.49 16.61 0.27 -17.66 16 25 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.06 1.54 5.88 -2.39 -0.01 1.53 16 28 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.06 1.53 5.88 -2.39 -0.01 1.52 16 32 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.10 2.54 8.10 -2.39 -0.02 2.52 16 35 H 0.10 2.47 8.08 -2.39 -0.02 2.45 16 36 H 0.35 11.13 8.20 -89.70 -0.74 10.40 16 37 H -0.02 -1.11 8.14 -2.39 -0.02 -1.13 16 38 H 0.01 0.39 8.09 -2.39 -0.02 0.37 16 39 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 40 H 0.13 3.08 7.65 -2.39 -0.02 3.06 16 41 H 0.11 3.02 8.14 -2.39 -0.02 3.00 16 Total: -1.00 -65.11 338.67 2.62 -62.49 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: 0.29 Total: 18.29 kcal Atomic # 6 Polarization: 11.94 SS G_CDS: 5.63 Total: 17.57 kcal Atomic # 7 Polarization: -92.43 SS G_CDS: -5.44 Total: -97.88 kcal Atomic # 8 Polarization: -44.76 SS G_CDS: 0.11 Total: -44.65 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.17 kcal Total: -65.11 2.62 -62.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171679035.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.074 kcal (2) G-P(sol) polarization free energy of solvation -65.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds