Wall clock time and date at job start Tue Mar 31 2020 06:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.46680 * 2 1 4 4 C 1.53002 * 109.47363 * 240.00330 * 2 1 3 5 5 C 1.52997 * 109.46888 * 174.99768 * 4 2 1 6 6 C 1.50703 * 109.46732 * 179.97438 * 5 4 2 7 7 H 1.07997 * 120.00210 * 359.97438 * 6 5 4 8 8 C 1.37877 * 119.99964 * 179.97438 * 6 5 4 9 9 N 1.31514 * 120.00228 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 120.00127 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47332 * 89.99981 * 10 8 6 12 12 H 1.48500 * 109.47182 * 210.00292 * 10 8 6 13 13 H 1.48500 * 109.47013 * 330.00118 * 10 8 6 14 14 N 1.46903 * 109.47512 * 119.99479 * 2 1 3 15 15 C 1.46895 * 111.00244 * 275.00380 * 14 2 1 16 16 C 1.52995 * 109.47105 * 179.97438 * 15 14 2 17 17 F 1.39896 * 109.47287 * 59.99955 * 16 15 14 18 18 F 1.39903 * 109.47108 * 300.00055 * 16 15 14 19 19 C 1.50707 * 109.47428 * 180.02562 * 16 15 14 20 20 C 1.38227 * 119.62024 * 179.97438 * 19 16 15 21 21 C 1.38627 * 119.15702 * 179.78495 * 20 19 16 22 22 C 1.38669 * 118.42389 * 0.47826 * 21 20 19 23 23 C 1.38186 * 119.16143 * 359.49762 * 22 21 20 24 24 N 1.31856 * 119.61172 * 359.97438 * 19 16 15 25 25 H 1.08994 * 109.47126 * 60.00274 * 1 2 3 26 26 H 1.09001 * 109.46680 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47027 * 299.99501 * 1 2 3 28 28 H 1.08999 * 109.46613 * 294.99391 * 4 2 1 29 29 H 1.08999 * 109.47047 * 54.99633 * 4 2 1 30 30 H 1.08999 * 109.47185 * 299.99272 * 5 4 2 31 31 H 1.08999 * 109.47387 * 60.00073 * 5 4 2 32 32 H 0.96999 * 120.00201 * 179.97438 * 9 8 6 33 33 H 1.00898 * 111.00046 * 151.04480 * 14 2 1 34 34 H 1.09003 * 109.47246 * 60.00048 * 15 14 2 35 35 H 1.08993 * 109.47223 * 300.00177 * 15 14 2 36 36 H 1.07998 * 120.41916 * 359.97438 * 20 19 16 37 37 H 1.08008 * 120.78688 * 180.22921 * 21 20 19 38 38 H 1.08002 * 120.42244 * 179.78279 * 22 21 20 39 39 H 1.07996 * 119.61757 * 180.25243 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 3.5649 -0.6131 -1.3136 6 6 4.0673 -1.3240 -2.5438 7 1 3.3689 -1.8051 -3.2126 8 6 5.4185 -1.3602 -2.8156 9 7 6.2690 -0.7747 -2.0010 10 14 6.0413 -2.2407 -4.3408 11 1 6.0907 -1.2867 -5.4777 12 1 7.4028 -2.7746 -4.0830 13 1 5.1253 -3.3610 -4.6743 14 7 2.0198 -0.6924 1.1995 15 6 2.0825 0.2227 2.3469 16 6 2.5952 -0.5330 3.5744 17 9 3.8726 -1.0387 3.3109 18 9 1.7267 -1.5898 3.8678 19 6 2.6590 0.4057 4.7518 20 6 3.0965 -0.0631 5.9763 21 6 3.1557 0.8096 7.0517 22 6 2.7613 2.1247 6.8569 23 6 2.3355 2.5214 5.6036 24 7 2.2968 1.6646 4.6017 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.7518 -1.7714 -1.2056 29 1 1.6054 -0.2617 -2.1370 30 1 3.8531 0.4372 -1.3574 31 1 3.9995 -1.0726 -0.4259 32 1 7.2197 -0.8005 -2.1920 33 1 2.9174 -1.1204 1.0288 34 1 1.0871 0.6164 2.5526 35 1 2.7588 1.0463 2.1182 36 1 3.3914 -1.0955 6.0930 37 1 3.4970 0.4723 8.0193 38 1 2.7910 2.8312 7.6733 39 1 2.0306 3.5449 5.4427 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172484534.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:09 Heat of formation + Delta-G solvation = -75.089581 kcal Electronic energy + Delta-G solvation = -22302.844865 eV Core-core repulsion = 18687.689438 eV Total energy + Delta-G solvation = -3615.155427 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.140 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.88111 -46.85673 -40.45102 -37.19038 -33.74122 -32.97232 -32.41240 -31.31417 -29.24362 -27.43977 -25.13017 -24.26982 -23.39617 -21.55272 -21.20673 -19.58075 -18.03182 -17.50911 -17.00186 -16.46643 -16.29979 -15.72648 -15.17927 -14.90973 -14.49692 -14.45424 -14.21002 -13.61303 -13.54105 -13.19656 -13.15097 -12.94693 -12.54178 -12.46252 -12.26121 -11.98347 -11.68192 -11.41816 -11.20040 -10.99477 -10.83670 -10.45095 -10.30206 -10.23258 -9.79040 -9.71540 -9.58453 -9.23713 -8.99391 -8.32192 -8.04871 -5.96274 -3.98453 0.57769 0.88204 3.20155 3.32653 3.34953 3.41072 3.45002 3.94668 4.22380 4.43639 4.49477 4.50673 4.66912 4.73496 4.83250 4.90010 5.12917 5.32341 5.39458 5.52882 5.64006 5.73264 5.76179 5.81625 5.87626 5.95340 6.20462 6.22206 6.38817 6.54252 6.56136 6.93625 7.11443 7.39753 7.50293 7.65182 7.81539 7.87267 8.03028 8.46327 9.08205 9.65526 11.14935 Molecular weight = 284.14amu Principal moments of inertia in cm(-1) A = 0.021887 B = 0.003749 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.966609 B = 7466.855248 C = 8026.138370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.085 3.915 3 H 0.041 0.959 4 C -0.114 4.114 5 C 0.019 3.981 6 C -0.519 4.519 7 H 0.055 0.945 8 C 0.056 3.944 9 N -0.895 5.895 10 Si 0.892 3.108 11 H -0.281 1.281 12 H -0.287 1.287 13 H -0.274 1.274 14 N -0.686 5.686 15 C 0.039 3.961 16 C 0.352 3.648 17 F -0.184 7.184 18 F -0.180 7.180 19 C 0.069 3.931 20 C -0.134 4.134 21 C -0.075 4.075 22 C -0.157 4.157 23 C 0.100 3.900 24 N -0.453 5.453 25 H 0.052 0.948 26 H 0.058 0.942 27 H 0.043 0.957 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.013 0.987 31 H 0.016 0.984 32 H 0.260 0.740 33 H 0.357 0.643 34 H 0.100 0.900 35 H 0.064 0.936 36 H 0.142 0.858 37 H 0.142 0.858 38 H 0.141 0.859 39 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.707 5.957 19.376 22.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.024 4.024 3 H 0.059 0.941 4 C -0.152 4.152 5 C -0.018 4.018 6 C -0.557 4.557 7 H 0.074 0.926 8 C -0.145 4.145 9 N -0.534 5.534 10 Si 0.720 3.280 11 H -0.207 1.207 12 H -0.213 1.213 13 H -0.198 1.198 14 N -0.322 5.322 15 C -0.092 4.092 16 C 0.314 3.686 17 F -0.165 7.165 18 F -0.161 7.161 19 C -0.070 4.070 20 C -0.154 4.154 21 C -0.102 4.102 22 C -0.177 4.177 23 C -0.057 4.057 24 N -0.161 5.161 25 H 0.071 0.929 26 H 0.078 0.922 27 H 0.063 0.937 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.031 0.969 31 H 0.034 0.966 32 H 0.069 0.931 33 H 0.180 0.820 34 H 0.119 0.881 35 H 0.082 0.918 36 H 0.160 0.840 37 H 0.160 0.840 38 H 0.159 0.841 39 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -9.403 5.966 18.725 21.787 hybrid contribution 1.673 -0.314 -0.052 1.703 sum -7.730 5.652 18.673 20.986 Atomic orbital electron populations 1.21795 0.95537 1.01860 1.00260 1.21609 0.94641 0.96170 0.89980 0.94076 1.21837 0.99704 0.99548 0.94143 1.19145 0.88768 0.96909 0.97021 1.21229 0.91961 1.34226 1.08280 0.92641 1.25028 0.97090 0.95640 0.96693 1.69964 1.02344 1.44175 1.36959 0.86600 0.78141 0.79968 0.83330 1.20748 1.21260 1.19845 1.60588 1.35301 1.31877 1.04427 1.22683 1.03179 0.94232 0.89071 1.19286 0.74561 0.81683 0.93028 1.93081 1.40229 1.88536 1.94629 1.93052 1.69418 1.59227 1.94393 1.21412 0.99041 0.92497 0.94075 1.21962 0.98635 1.01874 0.92958 1.21625 0.96135 0.93240 0.99155 1.22300 0.99267 0.96989 0.99145 1.22843 0.95497 0.99197 0.88206 1.67327 1.12800 1.01946 1.34073 0.92858 0.92249 0.93744 0.92322 0.92515 0.96913 0.96588 0.93056 0.82017 0.88145 0.91767 0.84009 0.84044 0.84128 0.81837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 9.42 37.16 0.35 -1.73 16 2 C 0.09 1.54 2.65 -67.71 -0.18 1.36 16 3 H 0.04 0.76 7.80 -51.93 -0.40 0.36 16 4 C -0.11 -2.42 4.74 -26.73 -0.13 -2.55 16 5 C 0.02 0.49 4.80 -27.88 -0.13 0.35 16 6 C -0.52 -14.95 9.11 -34.44 -0.31 -15.26 16 7 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 8 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 9 N -0.90 -27.33 13.29 55.43 0.74 -26.59 16 10 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 11 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 12 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 13 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 14 N -0.69 -12.50 6.23 -106.73 -0.67 -13.17 16 15 C 0.04 0.63 4.24 -3.83 -0.02 0.61 16 16 C 0.35 5.47 1.94 -27.88 -0.05 5.42 16 17 F -0.18 -3.21 16.45 2.25 0.04 -3.17 16 18 F -0.18 -2.90 16.89 2.25 0.04 -2.86 16 19 C 0.07 0.92 6.18 -82.58 -0.51 0.41 16 20 C -0.13 -1.45 9.63 -39.44 -0.38 -1.83 16 21 C -0.08 -0.60 10.18 -39.28 -0.40 -1.00 16 22 C -0.16 -1.14 10.11 -39.44 -0.40 -1.54 16 23 C 0.10 0.91 11.18 -17.55 -0.20 0.72 16 24 N -0.45 -5.71 9.00 -9.47 -0.09 -5.80 16 25 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.04 0.62 7.45 -51.93 -0.39 0.23 16 28 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 29 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 30 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.02 0.44 6.43 -51.93 -0.33 0.11 16 32 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 33 H 0.36 7.31 5.99 -39.29 -0.24 7.07 16 34 H 0.10 1.51 7.35 -51.93 -0.38 1.13 16 35 H 0.06 1.07 7.97 -51.93 -0.41 0.66 16 36 H 0.14 1.37 8.06 -52.49 -0.42 0.94 16 37 H 0.14 0.69 8.06 -52.48 -0.42 0.27 16 38 H 0.14 0.56 8.06 -52.49 -0.42 0.13 16 39 H 0.16 1.00 8.06 -52.49 -0.42 0.57 16 LS Contribution 334.32 15.07 5.04 5.04 Total: -1.00 -32.32 334.32 -7.88 -40.20 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -5.50 Total: 2.79 kcal Atomic # 6 Polarization: -11.03 SS G_CDS: -2.46 Total: -13.48 kcal Atomic # 7 Polarization: -45.54 SS G_CDS: -0.01 Total: -45.56 kcal Atomic # 9 Polarization: -6.10 SS G_CDS: 0.08 Total: -6.03 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.32 -7.88 -40.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172484534.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.889 kcal (2) G-P(sol) polarization free energy of solvation -32.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds