Wall clock time and date at job start Tue Mar 31 2020 06:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.46680 * 2 1 4 4 C 1.53002 * 109.47363 * 240.00330 * 2 1 3 5 5 C 1.52997 * 109.46888 * 174.99768 * 4 2 1 6 6 C 1.50703 * 109.46732 * 179.97438 * 5 4 2 7 7 H 1.07997 * 120.00210 * 359.97438 * 6 5 4 8 8 C 1.37877 * 119.99964 * 179.97438 * 6 5 4 9 9 N 1.31514 * 120.00228 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 120.00127 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47332 * 89.99981 * 10 8 6 12 12 H 1.48500 * 109.47182 * 210.00292 * 10 8 6 13 13 H 1.48500 * 109.47013 * 330.00118 * 10 8 6 14 14 N 1.46903 * 109.47512 * 119.99479 * 2 1 3 15 15 C 1.46895 * 111.00244 * 275.00380 * 14 2 1 16 16 C 1.52995 * 109.47105 * 179.97438 * 15 14 2 17 17 F 1.39896 * 109.47287 * 59.99955 * 16 15 14 18 18 F 1.39903 * 109.47108 * 300.00055 * 16 15 14 19 19 C 1.50707 * 109.47428 * 180.02562 * 16 15 14 20 20 C 1.38227 * 119.62024 * 179.97438 * 19 16 15 21 21 C 1.38627 * 119.15702 * 179.78495 * 20 19 16 22 22 C 1.38669 * 118.42389 * 0.47826 * 21 20 19 23 23 C 1.38186 * 119.16143 * 359.49762 * 22 21 20 24 24 N 1.31856 * 119.61172 * 359.97438 * 19 16 15 25 25 H 1.08994 * 109.47126 * 60.00274 * 1 2 3 26 26 H 1.09001 * 109.46680 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47027 * 299.99501 * 1 2 3 28 28 H 1.08999 * 109.46613 * 294.99391 * 4 2 1 29 29 H 1.08999 * 109.47047 * 54.99633 * 4 2 1 30 30 H 1.08999 * 109.47185 * 299.99272 * 5 4 2 31 31 H 1.08999 * 109.47387 * 60.00073 * 5 4 2 32 32 H 0.96999 * 120.00201 * 179.97438 * 9 8 6 33 33 H 1.00898 * 111.00046 * 151.04480 * 14 2 1 34 34 H 1.09003 * 109.47246 * 60.00048 * 15 14 2 35 35 H 1.08993 * 109.47223 * 300.00177 * 15 14 2 36 36 H 1.07998 * 120.41916 * 359.97438 * 20 19 16 37 37 H 1.08008 * 120.78688 * 180.22921 * 21 20 19 38 38 H 1.08002 * 120.42244 * 179.78279 * 22 21 20 39 39 H 1.07996 * 119.61757 * 180.25243 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 3.5649 -0.6131 -1.3136 6 6 4.0673 -1.3240 -2.5438 7 1 3.3689 -1.8051 -3.2126 8 6 5.4185 -1.3602 -2.8156 9 7 6.2690 -0.7747 -2.0010 10 14 6.0413 -2.2407 -4.3408 11 1 6.0907 -1.2867 -5.4777 12 1 7.4028 -2.7746 -4.0830 13 1 5.1253 -3.3610 -4.6743 14 7 2.0198 -0.6924 1.1995 15 6 2.0825 0.2227 2.3469 16 6 2.5952 -0.5330 3.5744 17 9 3.8726 -1.0387 3.3109 18 9 1.7267 -1.5898 3.8678 19 6 2.6590 0.4057 4.7518 20 6 3.0965 -0.0631 5.9763 21 6 3.1557 0.8096 7.0517 22 6 2.7613 2.1247 6.8569 23 6 2.3355 2.5214 5.6036 24 7 2.2968 1.6646 4.6017 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.7518 -1.7714 -1.2056 29 1 1.6054 -0.2617 -2.1370 30 1 3.8531 0.4372 -1.3574 31 1 3.9995 -1.0726 -0.4259 32 1 7.2197 -0.8005 -2.1920 33 1 2.9174 -1.1204 1.0288 34 1 1.0871 0.6164 2.5526 35 1 2.7588 1.0463 2.1182 36 1 3.3914 -1.0955 6.0930 37 1 3.4970 0.4723 8.0193 38 1 2.7910 2.8312 7.6733 39 1 2.0306 3.5449 5.4427 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172484534.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:09 Heat of formation + Delta-G solvation = -95.360930 kcal Electronic energy + Delta-G solvation = -22303.723897 eV Core-core repulsion = 18687.689438 eV Total energy + Delta-G solvation = -3616.034458 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.140 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -50.14980 -48.13978 -41.19702 -38.71986 -35.46317 -34.30607 -33.34475 -32.65204 -30.95641 -28.59095 -27.02786 -25.22956 -24.29615 -23.22871 -22.48441 -21.16770 -19.02383 -18.80480 -18.57288 -17.94374 -17.22699 -16.82273 -16.58824 -16.42322 -16.04208 -15.69388 -15.19044 -14.80125 -14.67032 -14.49774 -14.44130 -14.28793 -14.16170 -14.01154 -13.57170 -13.22583 -13.10978 -12.95675 -12.83657 -12.72223 -12.34847 -12.22065 -11.81069 -11.63624 -11.33118 -10.99564 -10.97860 -10.59551 -10.55258 -10.32512 -9.53059 -8.20494 -6.31728 -0.17106 0.20650 1.38923 1.40669 1.51952 2.20110 2.40501 2.58683 2.78708 2.98487 3.12586 3.50948 3.64871 3.69726 3.95922 4.03628 4.04296 4.06990 4.29169 4.40790 4.45132 4.51901 4.54553 4.66773 4.75947 4.95004 4.99718 5.02270 5.04676 5.11411 5.18893 5.42465 5.51535 5.58587 5.64706 5.82726 6.01326 6.19774 6.24619 6.75288 6.84762 7.37516 8.91105 Molecular weight = 284.14amu Principal moments of inertia in cm(-1) A = 0.021887 B = 0.003749 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.966609 B = 7466.855248 C = 8026.138370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.088 3.912 3 H 0.035 0.965 4 C -0.101 4.101 5 C 0.025 3.975 6 C -0.543 4.543 7 H 0.060 0.940 8 C -0.001 4.001 9 N -0.933 5.933 10 Si 0.966 3.034 11 H -0.271 1.271 12 H -0.282 1.282 13 H -0.263 1.263 14 N -0.690 5.690 15 C 0.046 3.954 16 C 0.347 3.653 17 F -0.202 7.202 18 F -0.187 7.187 19 C 0.038 3.962 20 C -0.147 4.147 21 C -0.072 4.072 22 C -0.140 4.140 23 C 0.089 3.911 24 N -0.484 5.484 25 H 0.069 0.931 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.065 0.935 30 H -0.015 1.015 31 H -0.006 1.006 32 H 0.263 0.737 33 H 0.340 0.660 34 H 0.113 0.887 35 H 0.053 0.947 36 H 0.143 0.857 37 H 0.178 0.822 38 H 0.183 0.817 39 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.569 6.653 20.456 23.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.021 4.021 3 H 0.053 0.947 4 C -0.139 4.139 5 C -0.012 4.012 6 C -0.581 4.581 7 H 0.079 0.921 8 C -0.198 4.198 9 N -0.573 5.573 10 Si 0.790 3.210 11 H -0.197 1.197 12 H -0.208 1.208 13 H -0.187 1.187 14 N -0.324 5.324 15 C -0.084 4.084 16 C 0.310 3.690 17 F -0.183 7.183 18 F -0.168 7.168 19 C -0.100 4.100 20 C -0.167 4.167 21 C -0.097 4.097 22 C -0.159 4.159 23 C -0.069 4.069 24 N -0.193 5.193 25 H 0.088 0.912 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.003 0.997 31 H 0.012 0.988 32 H 0.071 0.929 33 H 0.160 0.840 34 H 0.131 0.869 35 H 0.071 0.929 36 H 0.161 0.839 37 H 0.195 0.805 38 H 0.201 0.799 39 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -10.295 6.661 19.806 23.295 hybrid contribution 1.949 -0.446 -0.293 2.021 sum -8.346 6.216 19.514 22.115 Atomic orbital electron populations 1.21715 0.92613 1.02336 1.01839 1.21594 0.96797 0.95132 0.88606 0.94739 1.21653 0.96084 0.99940 0.96235 1.19019 0.92227 0.94545 0.95409 1.21684 0.92626 1.34569 1.09194 0.92146 1.25993 0.97342 0.96352 1.00157 1.70105 1.02740 1.45449 1.39010 0.85439 0.77561 0.78947 0.79058 1.19667 1.20792 1.18738 1.60693 1.34067 1.32488 1.05119 1.22646 1.03568 0.93562 0.88625 1.19431 0.73564 0.81829 0.94183 1.93032 1.41480 1.88904 1.94915 1.93021 1.69532 1.59757 1.94468 1.21075 1.02254 0.92766 0.93871 1.22129 0.98811 1.02723 0.93053 1.22081 0.94975 0.93102 0.99569 1.22780 0.96434 0.97301 0.99364 1.23455 0.95185 0.99833 0.88440 1.67224 1.14028 1.02032 1.36047 0.91205 0.92286 0.92258 0.92575 0.91668 0.99654 0.98823 0.92850 0.83972 0.86874 0.92904 0.83881 0.80511 0.79942 0.79128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.70 9.42 71.98 0.68 -3.02 16 2 C 0.09 3.21 2.65 44.92 0.12 3.33 16 3 H 0.03 1.31 7.80 -2.39 -0.02 1.29 16 4 C -0.10 -4.36 4.74 30.59 0.15 -4.21 16 5 C 0.03 1.37 4.80 29.85 0.14 1.52 16 6 C -0.54 -31.89 9.11 25.60 0.23 -31.65 16 7 H 0.06 3.40 7.74 -2.91 -0.02 3.38 16 8 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 9 N -0.93 -58.39 13.29 21.45 0.28 -58.11 16 10 Si 0.97 45.51 29.54 68.60 2.03 47.54 16 11 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 12 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 13 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 14 N -0.69 -26.08 6.23 -491.59 -3.06 -29.15 16 15 C 0.05 1.55 4.24 86.30 0.37 1.91 16 16 C 0.35 11.32 1.94 29.85 0.06 11.38 16 17 F -0.20 -7.56 16.45 44.97 0.74 -6.82 16 18 F -0.19 -6.24 16.89 44.97 0.76 -5.48 16 19 C 0.04 1.03 6.18 42.55 0.26 1.29 16 20 C -0.15 -3.10 9.63 22.36 0.22 -2.88 16 21 C -0.07 -0.94 10.18 22.47 0.23 -0.71 16 22 C -0.14 -1.52 10.11 22.36 0.23 -1.30 16 23 C 0.09 1.43 11.18 84.67 0.95 2.38 16 24 N -0.48 -12.07 9.00 -183.88 -1.65 -13.73 16 25 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 26 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.06 1.55 7.45 -2.39 -0.02 1.54 16 28 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 29 H 0.06 2.67 8.14 -2.39 -0.02 2.65 16 30 H -0.01 -0.88 8.14 -2.39 -0.02 -0.90 16 31 H -0.01 -0.38 6.43 -2.39 -0.02 -0.39 16 32 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 33 H 0.34 14.82 5.99 -89.70 -0.54 14.28 16 34 H 0.11 3.44 7.35 -2.39 -0.02 3.42 16 35 H 0.05 1.88 7.97 -2.39 -0.02 1.86 16 36 H 0.14 2.80 8.06 -2.91 -0.02 2.78 16 37 H 0.18 1.00 8.06 -2.91 -0.02 0.97 16 38 H 0.18 0.45 8.06 -2.91 -0.02 0.43 16 39 H 0.19 1.80 8.06 -2.91 -0.02 1.78 16 Total: -1.00 -72.38 334.32 3.69 -68.70 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: 0.51 Total: 18.59 kcal Atomic # 6 Polarization: -25.63 SS G_CDS: 4.08 Total: -21.54 kcal Atomic # 7 Polarization: -96.55 SS G_CDS: -4.43 Total: -100.98 kcal Atomic # 9 Polarization: -13.80 SS G_CDS: 1.50 Total: -12.30 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -72.38 3.69 -68.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172484534.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.665 kcal (2) G-P(sol) polarization free energy of solvation -72.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds