Wall clock time and date at job start Tue Mar 31 2020 06:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46982 * 2 1 4 4 C 1.52994 * 109.47490 * 119.99992 * 2 1 3 5 5 C 1.53001 * 109.47302 * 184.99871 * 4 2 1 6 6 C 1.50705 * 109.46965 * 180.02562 * 5 4 2 7 7 H 1.07996 * 120.00153 * 0.02562 * 6 5 4 8 8 C 1.37878 * 119.99474 * 180.02562 * 6 5 4 9 9 N 1.31514 * 120.00248 * 359.97438 * 8 6 5 10 10 Si 1.86807 * 119.99550 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47052 * 89.99867 * 10 8 6 12 12 H 1.48496 * 109.46867 * 209.99610 * 10 8 6 13 13 H 1.48491 * 109.47261 * 329.99653 * 10 8 6 14 14 N 1.46903 * 109.46872 * 240.00412 * 2 1 3 15 15 C 1.46895 * 111.00256 * 85.00080 * 14 2 1 16 16 C 1.52995 * 109.47121 * 180.02562 * 15 14 2 17 17 F 1.39899 * 109.47781 * 59.99513 * 16 15 14 18 18 F 1.39901 * 109.47162 * 299.99348 * 16 15 14 19 19 C 1.50707 * 109.47440 * 179.97438 * 16 15 14 20 20 C 1.38227 * 119.62059 * 180.02562 * 19 16 15 21 21 C 1.38627 * 119.15702 * 179.74122 * 20 19 16 22 22 C 1.38669 * 118.42389 * 0.47826 * 21 20 19 23 23 C 1.38186 * 119.16143 * 359.49762 * 22 21 20 24 24 N 1.31856 * 119.61137 * 359.97438 * 19 16 15 25 25 H 1.09000 * 109.46982 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46948 * 299.99974 * 1 2 3 27 27 H 1.08993 * 109.47157 * 59.99542 * 1 2 3 28 28 H 1.09002 * 109.47446 * 305.00261 * 4 2 1 29 29 H 1.09004 * 109.46947 * 64.99931 * 4 2 1 30 30 H 1.08998 * 109.47228 * 300.00030 * 5 4 2 31 31 H 1.09004 * 109.47071 * 60.00136 * 5 4 2 32 32 H 0.96998 * 119.99851 * 180.02562 * 9 8 6 33 33 H 1.00907 * 110.99722 * 208.95057 * 14 2 1 34 34 H 1.09000 * 109.47576 * 59.99546 * 15 14 2 35 35 H 1.09003 * 109.46702 * 299.99423 * 15 14 2 36 36 H 1.07998 * 120.41916 * 359.95342 * 20 19 16 37 37 H 1.08008 * 120.78688 * 180.22921 * 21 20 19 38 38 H 1.08002 * 120.42244 * 179.78279 * 22 21 20 39 39 H 1.07996 * 119.61757 * 180.25243 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5649 -0.6132 1.3135 6 6 4.0673 -1.3242 2.5437 7 1 3.3690 -1.8053 3.2124 8 6 5.4186 -1.3604 2.8153 9 7 6.2691 -0.7750 2.0007 10 14 6.0415 -2.2423 4.3398 11 1 6.3222 -3.6627 4.0100 12 1 7.2874 -1.5890 4.8152 13 1 5.0101 -2.1762 5.4060 14 7 2.0196 -0.6924 -1.1995 15 6 2.0824 0.2227 -2.3469 16 6 2.5949 -0.5331 -3.5745 17 9 1.7265 -1.5899 -3.8678 18 9 3.8725 -1.0388 -3.3110 19 6 2.6588 0.4055 -4.7518 20 6 3.0962 -0.0633 -5.9764 21 6 3.1460 0.8071 -7.0542 22 6 2.7618 2.1248 -6.8568 23 6 2.3351 2.5213 -5.6037 24 7 2.2958 1.6643 -4.6020 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.6055 -0.2618 2.1370 29 1 1.7517 -1.7715 1.2055 30 1 3.9995 -1.0727 0.4258 31 1 3.8533 0.4371 1.3572 32 1 7.2197 -0.8008 2.1917 33 1 2.9174 -1.1204 -1.0288 34 1 2.7588 1.0463 -2.1183 35 1 1.0870 0.6163 -2.5525 36 1 3.3921 -1.0954 -6.0928 37 1 3.4800 0.4679 -8.0238 38 1 2.7913 2.8312 -7.6732 39 1 2.0303 3.5447 -5.4428 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172484535.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:12 Heat of formation + Delta-G solvation = -75.098610 kcal Electronic energy + Delta-G solvation = -22302.793030 eV Core-core repulsion = 18687.637211 eV Total energy + Delta-G solvation = -3615.155818 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.140 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.88108 -46.85680 -40.45108 -37.19032 -33.74102 -32.97224 -32.41243 -31.31394 -29.24323 -27.43950 -25.13037 -24.26980 -23.39614 -21.55280 -21.20670 -19.58031 -18.03186 -17.50905 -17.00217 -16.46656 -16.29955 -15.72625 -15.17995 -14.90952 -14.49665 -14.45459 -14.20997 -13.61220 -13.54193 -13.19666 -13.15119 -12.94678 -12.54219 -12.46254 -12.26008 -11.98327 -11.68156 -11.41956 -11.20173 -10.98361 -10.84697 -10.45398 -10.30293 -10.22623 -9.79250 -9.71442 -9.58452 -9.23830 -8.99378 -8.32166 -8.04882 -5.96290 -3.98460 0.57772 0.88190 3.20164 3.32644 3.35234 3.41132 3.44664 3.94661 4.22356 4.43634 4.49461 4.50669 4.66909 4.73499 4.83212 4.89998 5.12923 5.32338 5.39446 5.52870 5.63997 5.73240 5.76170 5.81602 5.87596 5.95374 6.20468 6.22209 6.38818 6.54258 6.56119 6.93610 7.11432 7.39737 7.50286 7.65164 7.81549 7.87190 8.03026 8.46328 9.08206 9.65520 11.14922 Molecular weight = 284.14amu Principal moments of inertia in cm(-1) A = 0.021895 B = 0.003749 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.502300 B = 7467.705993 C = 8026.429065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.085 3.915 3 H 0.041 0.959 4 C -0.114 4.114 5 C 0.019 3.981 6 C -0.519 4.519 7 H 0.055 0.945 8 C 0.057 3.943 9 N -0.895 5.895 10 Si 0.892 3.108 11 H -0.280 1.280 12 H -0.287 1.287 13 H -0.274 1.274 14 N -0.686 5.686 15 C 0.039 3.961 16 C 0.352 3.648 17 F -0.180 7.180 18 F -0.184 7.184 19 C 0.069 3.931 20 C -0.134 4.134 21 C -0.076 4.076 22 C -0.157 4.157 23 C 0.100 3.900 24 N -0.453 5.453 25 H 0.058 0.942 26 H 0.052 0.948 27 H 0.043 0.957 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.016 0.984 31 H 0.013 0.987 32 H 0.260 0.740 33 H 0.357 0.643 34 H 0.064 0.936 35 H 0.100 0.900 36 H 0.142 0.858 37 H 0.142 0.858 38 H 0.141 0.859 39 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.716 5.962 -19.374 22.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.024 4.024 3 H 0.059 0.941 4 C -0.152 4.152 5 C -0.018 4.018 6 C -0.557 4.557 7 H 0.074 0.926 8 C -0.144 4.144 9 N -0.534 5.534 10 Si 0.720 3.280 11 H -0.206 1.206 12 H -0.213 1.213 13 H -0.199 1.199 14 N -0.322 5.322 15 C -0.092 4.092 16 C 0.314 3.686 17 F -0.161 7.161 18 F -0.165 7.165 19 C -0.070 4.070 20 C -0.154 4.154 21 C -0.102 4.102 22 C -0.177 4.177 23 C -0.057 4.057 24 N -0.161 5.161 25 H 0.078 0.922 26 H 0.071 0.929 27 H 0.062 0.938 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.034 0.966 31 H 0.031 0.969 32 H 0.069 0.931 33 H 0.180 0.820 34 H 0.082 0.918 35 H 0.119 0.881 36 H 0.160 0.840 37 H 0.160 0.840 38 H 0.159 0.841 39 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -9.414 5.979 -18.718 21.788 hybrid contribution 1.675 -0.333 0.040 1.708 sum -7.739 5.646 -18.678 20.991 Atomic orbital electron populations 1.21796 0.95536 1.01859 1.00261 1.21608 0.94642 0.96171 0.89978 0.94073 1.21837 0.99705 0.99545 0.94147 1.19147 0.88766 0.96915 0.97015 1.21229 0.91961 1.34196 1.08312 0.92641 1.25028 0.97094 0.95617 0.96708 1.69966 1.02334 1.44076 1.37064 0.86599 0.78264 0.79801 0.83375 1.20650 1.21303 1.19901 1.60595 1.35299 1.31871 1.04425 1.22684 1.03181 0.94231 0.89070 1.19286 0.74561 0.81683 0.93028 1.93051 1.69419 1.59224 1.94393 1.93082 1.40226 1.88538 1.94633 1.21413 0.99027 0.92499 0.94090 1.21961 0.98627 1.01901 0.92937 1.21625 0.96156 0.93235 0.99142 1.22300 0.99291 0.96955 0.99152 1.22843 0.95469 0.99208 0.88226 1.67327 1.12833 1.01939 1.34045 0.92247 0.92853 0.93750 0.92512 0.92327 0.96599 0.96903 0.93057 0.82019 0.91766 0.88144 0.84010 0.84044 0.84128 0.81836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 9.42 37.16 0.35 -1.73 16 2 C 0.09 1.54 2.65 -67.71 -0.18 1.36 16 3 H 0.04 0.76 7.80 -51.93 -0.40 0.36 16 4 C -0.11 -2.42 4.74 -26.73 -0.13 -2.55 16 5 C 0.02 0.49 4.80 -27.88 -0.13 0.36 16 6 C -0.52 -14.95 9.11 -34.44 -0.31 -15.26 16 7 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 8 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 9 N -0.90 -27.33 13.29 55.43 0.74 -26.59 16 10 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 11 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 13 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 14 N -0.69 -12.50 6.23 -106.73 -0.67 -13.17 16 15 C 0.04 0.63 4.24 -3.83 -0.02 0.61 16 16 C 0.35 5.47 1.94 -27.88 -0.05 5.42 16 17 F -0.18 -2.89 16.89 2.25 0.04 -2.86 16 18 F -0.18 -3.21 16.45 2.25 0.04 -3.17 16 19 C 0.07 0.92 6.17 -82.58 -0.51 0.41 16 20 C -0.13 -1.45 9.63 -39.44 -0.38 -1.83 16 21 C -0.08 -0.60 10.18 -39.28 -0.40 -1.00 16 22 C -0.16 -1.14 10.11 -39.44 -0.40 -1.54 16 23 C 0.10 0.91 11.18 -17.55 -0.20 0.72 16 24 N -0.45 -5.71 9.00 -9.47 -0.09 -5.80 16 25 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.04 0.62 7.45 -51.93 -0.39 0.23 16 28 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 29 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.02 0.44 6.43 -51.93 -0.33 0.10 16 31 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 33 H 0.36 7.31 5.99 -39.29 -0.24 7.07 16 34 H 0.06 1.07 7.97 -51.93 -0.41 0.66 16 35 H 0.10 1.51 7.35 -51.93 -0.38 1.13 16 36 H 0.14 1.37 8.06 -52.49 -0.42 0.94 16 37 H 0.14 0.69 8.06 -52.48 -0.42 0.26 16 38 H 0.14 0.56 8.06 -52.49 -0.42 0.13 16 39 H 0.16 1.00 8.06 -52.49 -0.42 0.57 16 LS Contribution 334.33 15.07 5.04 5.04 Total: -1.00 -32.32 334.33 -7.88 -40.20 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -5.50 Total: 2.79 kcal Atomic # 6 Polarization: -11.03 SS G_CDS: -2.46 Total: -13.48 kcal Atomic # 7 Polarization: -45.54 SS G_CDS: -0.01 Total: -45.55 kcal Atomic # 9 Polarization: -6.10 SS G_CDS: 0.08 Total: -6.03 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.32 -7.88 -40.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172484535.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.899 kcal (2) G-P(sol) polarization free energy of solvation -32.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds