Wall clock time and date at job start Tue Mar 31 2020 06:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46982 * 2 1 4 4 C 1.52994 * 109.47490 * 119.99992 * 2 1 3 5 5 C 1.53001 * 109.47302 * 184.99871 * 4 2 1 6 6 C 1.50705 * 109.46965 * 180.02562 * 5 4 2 7 7 H 1.07996 * 120.00153 * 0.02562 * 6 5 4 8 8 C 1.37878 * 119.99474 * 180.02562 * 6 5 4 9 9 N 1.31514 * 120.00248 * 359.97438 * 8 6 5 10 10 Si 1.86807 * 119.99550 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47052 * 89.99867 * 10 8 6 12 12 H 1.48496 * 109.46867 * 209.99610 * 10 8 6 13 13 H 1.48491 * 109.47261 * 329.99653 * 10 8 6 14 14 N 1.46903 * 109.46872 * 240.00412 * 2 1 3 15 15 C 1.46895 * 111.00256 * 85.00080 * 14 2 1 16 16 C 1.52995 * 109.47121 * 180.02562 * 15 14 2 17 17 F 1.39899 * 109.47781 * 59.99513 * 16 15 14 18 18 F 1.39901 * 109.47162 * 299.99348 * 16 15 14 19 19 C 1.50707 * 109.47440 * 179.97438 * 16 15 14 20 20 C 1.38227 * 119.62059 * 180.02562 * 19 16 15 21 21 C 1.38627 * 119.15702 * 179.74122 * 20 19 16 22 22 C 1.38669 * 118.42389 * 0.47826 * 21 20 19 23 23 C 1.38186 * 119.16143 * 359.49762 * 22 21 20 24 24 N 1.31856 * 119.61137 * 359.97438 * 19 16 15 25 25 H 1.09000 * 109.46982 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46948 * 299.99974 * 1 2 3 27 27 H 1.08993 * 109.47157 * 59.99542 * 1 2 3 28 28 H 1.09002 * 109.47446 * 305.00261 * 4 2 1 29 29 H 1.09004 * 109.46947 * 64.99931 * 4 2 1 30 30 H 1.08998 * 109.47228 * 300.00030 * 5 4 2 31 31 H 1.09004 * 109.47071 * 60.00136 * 5 4 2 32 32 H 0.96998 * 119.99851 * 180.02562 * 9 8 6 33 33 H 1.00907 * 110.99722 * 208.95057 * 14 2 1 34 34 H 1.09000 * 109.47576 * 59.99546 * 15 14 2 35 35 H 1.09003 * 109.46702 * 299.99423 * 15 14 2 36 36 H 1.07998 * 120.41916 * 359.95342 * 20 19 16 37 37 H 1.08008 * 120.78688 * 180.22921 * 21 20 19 38 38 H 1.08002 * 120.42244 * 179.78279 * 22 21 20 39 39 H 1.07996 * 119.61757 * 180.25243 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5649 -0.6132 1.3135 6 6 4.0673 -1.3242 2.5437 7 1 3.3690 -1.8053 3.2124 8 6 5.4186 -1.3604 2.8153 9 7 6.2691 -0.7750 2.0007 10 14 6.0415 -2.2423 4.3398 11 1 6.3222 -3.6627 4.0100 12 1 7.2874 -1.5890 4.8152 13 1 5.0101 -2.1762 5.4060 14 7 2.0196 -0.6924 -1.1995 15 6 2.0824 0.2227 -2.3469 16 6 2.5949 -0.5331 -3.5745 17 9 1.7265 -1.5899 -3.8678 18 9 3.8725 -1.0388 -3.3110 19 6 2.6588 0.4055 -4.7518 20 6 3.0962 -0.0633 -5.9764 21 6 3.1460 0.8071 -7.0542 22 6 2.7618 2.1248 -6.8568 23 6 2.3351 2.5213 -5.6037 24 7 2.2958 1.6643 -4.6020 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.6055 -0.2618 2.1370 29 1 1.7517 -1.7715 1.2055 30 1 3.9995 -1.0727 0.4258 31 1 3.8533 0.4371 1.3572 32 1 7.2197 -0.8008 2.1917 33 1 2.9174 -1.1204 -1.0288 34 1 2.7588 1.0463 -2.1183 35 1 1.0870 0.6163 -2.5525 36 1 3.3921 -1.0954 -6.0928 37 1 3.4800 0.4679 -8.0238 38 1 2.7913 2.8312 -7.6732 39 1 2.0303 3.5447 -5.4428 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172484535.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:12 Heat of formation + Delta-G solvation = -95.368365 kcal Electronic energy + Delta-G solvation = -22303.671992 eV Core-core repulsion = 18687.637211 eV Total energy + Delta-G solvation = -3616.034781 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.140 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.14985 -48.13999 -41.19708 -38.71980 -35.46289 -34.30605 -33.34473 -32.65188 -30.95606 -28.59071 -27.02805 -25.22950 -24.29621 -23.22890 -22.48434 -21.16728 -19.02393 -18.80483 -18.57304 -17.94387 -17.22709 -16.82242 -16.58895 -16.42289 -16.04182 -15.69420 -15.19030 -14.80149 -14.67032 -14.49802 -14.44200 -14.28705 -14.16186 -14.01178 -13.57106 -13.22854 -13.10729 -12.95632 -12.83700 -12.72296 -12.35573 -12.21434 -11.80100 -11.64212 -11.33477 -10.99563 -10.97694 -10.59625 -10.55241 -10.32515 -9.53107 -8.20511 -6.31732 -0.17106 0.20641 1.38992 1.40788 1.51748 2.20108 2.40485 2.58676 2.78691 2.98456 3.12588 3.50970 3.64794 3.69729 3.95920 4.03623 4.04287 4.06982 4.29146 4.40785 4.45150 4.51844 4.54538 4.66766 4.75950 4.95039 4.99684 5.02270 5.04693 5.11401 5.18871 5.42451 5.51534 5.58583 5.64689 5.82732 6.01301 6.19703 6.24607 6.75279 6.84763 7.37506 8.91095 Molecular weight = 284.14amu Principal moments of inertia in cm(-1) A = 0.021895 B = 0.003749 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.502300 B = 7467.705993 C = 8026.429065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.088 3.912 3 H 0.035 0.965 4 C -0.101 4.101 5 C 0.025 3.975 6 C -0.543 4.543 7 H 0.060 0.940 8 C -0.001 4.001 9 N -0.933 5.933 10 Si 0.966 3.034 11 H -0.273 1.273 12 H -0.282 1.282 13 H -0.262 1.262 14 N -0.690 5.690 15 C 0.046 3.954 16 C 0.347 3.653 17 F -0.187 7.187 18 F -0.202 7.202 19 C 0.038 3.962 20 C -0.147 4.147 21 C -0.072 4.072 22 C -0.140 4.140 23 C 0.089 3.911 24 N -0.484 5.484 25 H 0.058 0.942 26 H 0.069 0.931 27 H 0.058 0.942 28 H 0.064 0.936 29 H 0.056 0.944 30 H -0.007 1.007 31 H -0.015 1.015 32 H 0.263 0.737 33 H 0.340 0.660 34 H 0.053 0.947 35 H 0.113 0.887 36 H 0.143 0.857 37 H 0.178 0.822 38 H 0.183 0.817 39 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.583 6.646 -20.460 23.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.021 4.021 3 H 0.053 0.947 4 C -0.139 4.139 5 C -0.012 4.012 6 C -0.581 4.581 7 H 0.079 0.921 8 C -0.198 4.198 9 N -0.573 5.573 10 Si 0.790 3.210 11 H -0.199 1.199 12 H -0.207 1.207 13 H -0.186 1.186 14 N -0.324 5.324 15 C -0.084 4.084 16 C 0.310 3.690 17 F -0.168 7.168 18 F -0.183 7.183 19 C -0.100 4.100 20 C -0.167 4.167 21 C -0.097 4.097 22 C -0.159 4.159 23 C -0.069 4.069 24 N -0.193 5.193 25 H 0.077 0.923 26 H 0.088 0.912 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.074 0.926 30 H 0.012 0.988 31 H 0.004 0.996 32 H 0.071 0.929 33 H 0.160 0.840 34 H 0.071 0.929 35 H 0.131 0.869 36 H 0.161 0.839 37 H 0.195 0.805 38 H 0.201 0.799 39 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -10.311 6.661 -19.806 23.302 hybrid contribution 1.953 -0.462 0.282 2.026 sum -8.358 6.199 -19.524 22.124 Atomic orbital electron populations 1.21716 0.92612 1.02337 1.01838 1.21593 0.96798 0.95132 0.88606 0.94740 1.21653 0.96083 0.99949 0.96227 1.19020 0.92225 0.94551 0.95404 1.21684 0.92626 1.34534 1.09227 0.92142 1.25994 0.97347 0.96328 1.00174 1.70106 1.02731 1.45358 1.39107 0.85440 0.77829 0.78518 0.79224 1.19854 1.20716 1.18627 1.60700 1.34064 1.32481 1.05116 1.22647 1.03569 0.93561 0.88624 1.19432 0.73564 0.81829 0.94183 1.93020 1.69533 1.59755 1.94467 1.93033 1.41480 1.88907 1.94918 1.21075 1.02240 0.92768 0.93885 1.22129 0.98808 1.02744 0.93036 1.22080 0.94974 0.93106 0.99564 1.22781 0.96452 0.97276 0.99371 1.23455 0.95161 0.99842 0.88457 1.67224 1.14061 1.02024 1.36019 0.92280 0.91204 0.92265 0.91685 0.92558 0.98834 0.99646 0.92851 0.83974 0.92904 0.86873 0.83882 0.80509 0.79942 0.79129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.70 9.42 71.98 0.68 -3.02 16 2 C 0.09 3.21 2.65 44.91 0.12 3.33 16 3 H 0.03 1.31 7.80 -2.39 -0.02 1.29 16 4 C -0.10 -4.36 4.74 30.59 0.15 -4.21 16 5 C 0.03 1.37 4.80 29.85 0.14 1.52 16 6 C -0.54 -31.88 9.11 25.60 0.23 -31.65 16 7 H 0.06 3.40 7.74 -2.91 -0.02 3.38 16 8 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 9 N -0.93 -58.39 13.29 21.45 0.28 -58.11 16 10 Si 0.97 45.51 29.54 68.60 2.03 47.54 16 11 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 12 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 13 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 14 N -0.69 -26.08 6.23 -491.59 -3.06 -29.14 16 15 C 0.05 1.55 4.24 86.30 0.37 1.91 16 16 C 0.35 11.33 1.94 29.85 0.06 11.38 16 17 F -0.19 -6.24 16.89 44.97 0.76 -5.48 16 18 F -0.20 -7.56 16.45 44.97 0.74 -6.82 16 19 C 0.04 1.03 6.17 42.55 0.26 1.29 16 20 C -0.15 -3.10 9.63 22.36 0.22 -2.88 16 21 C -0.07 -0.94 10.18 22.47 0.23 -0.71 16 22 C -0.14 -1.52 10.11 22.36 0.23 -1.30 16 23 C 0.09 1.43 11.18 84.67 0.95 2.38 16 24 N -0.48 -12.07 9.00 -183.88 -1.65 -13.73 16 25 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 26 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.06 1.55 7.45 -2.39 -0.02 1.53 16 28 H 0.06 2.66 8.14 -2.39 -0.02 2.64 16 29 H 0.06 2.43 8.14 -2.38 -0.02 2.41 16 30 H -0.01 -0.38 6.43 -2.39 -0.02 -0.40 16 31 H -0.01 -0.88 8.14 -2.38 -0.02 -0.90 16 32 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 33 H 0.34 14.82 5.99 -89.69 -0.54 14.28 16 34 H 0.05 1.88 7.97 -2.39 -0.02 1.86 16 35 H 0.11 3.44 7.35 -2.39 -0.02 3.42 16 36 H 0.14 2.80 8.06 -2.91 -0.02 2.78 16 37 H 0.18 1.00 8.06 -2.91 -0.02 0.97 16 38 H 0.18 0.45 8.06 -2.91 -0.02 0.43 16 39 H 0.19 1.80 8.06 -2.91 -0.02 1.78 16 Total: -1.00 -72.38 334.33 3.69 -68.69 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: 0.51 Total: 18.59 kcal Atomic # 6 Polarization: -25.62 SS G_CDS: 4.08 Total: -21.54 kcal Atomic # 7 Polarization: -96.54 SS G_CDS: -4.43 Total: -100.98 kcal Atomic # 9 Polarization: -13.80 SS G_CDS: 1.50 Total: -12.30 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -72.38 3.69 -68.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172484535.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.676 kcal (2) G-P(sol) polarization free energy of solvation -72.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds