Wall clock time and date at job start Tue Mar 31 2020 05:26:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99618 * 2 1 4 4 H 1.48512 * 109.47085 * 240.00105 * 3 2 1 5 5 H 1.48499 * 109.47398 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47399 * 120.00363 * 3 2 1 7 7 C 1.37874 * 120.00121 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99992 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00273 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.49995 * 299.92457 * 9 7 2 11 11 C 1.53123 * 109.50446 * 59.99598 * 9 7 2 12 12 C 1.53113 * 109.16265 * 177.59309 * 11 9 7 13 13 C 1.53031 * 109.28345 * 302.35564 * 12 11 9 14 14 N 1.46843 * 109.52703 * 59.17019 * 13 12 11 15 15 C 1.46907 * 110.99942 * 174.16479 * 14 13 12 16 16 C 1.50690 * 109.47159 * 64.30295 * 15 14 13 17 17 C 1.34852 * 125.89489 * 73.98087 * 16 15 14 18 18 C 1.40882 * 107.42049 * 180.02562 * 17 16 15 19 19 C 1.34855 * 107.41789 * 0.02562 * 18 17 16 20 20 N 1.36339 * 108.21669 * 359.73677 * 19 18 17 21 21 C 1.46494 * 125.63660 * 180.26732 * 20 19 18 22 22 F 1.39898 * 109.47476 * 127.90056 * 21 20 19 23 23 F 1.39904 * 109.46946 * 247.90121 * 21 20 19 24 24 C 1.46843 * 111.20182 * 298.26477 * 14 13 12 25 25 H 0.96997 * 120.00415 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.51542 * 57.69081 * 11 9 7 27 27 H 1.08997 * 109.57498 * 297.53721 * 11 9 7 28 28 H 1.08999 * 109.50765 * 182.40373 * 12 11 9 29 29 H 1.09009 * 109.49877 * 62.29228 * 12 11 9 30 30 H 1.09003 * 109.45961 * 299.15701 * 13 12 11 31 31 H 1.08998 * 109.46662 * 179.19687 * 13 12 11 32 32 H 1.09001 * 109.46945 * 304.29994 * 15 14 13 33 33 H 1.08998 * 109.46904 * 184.30042 * 15 14 13 34 34 H 1.08004 * 126.28446 * 0.02562 * 17 16 15 35 35 H 1.08003 * 126.29490 * 179.97438 * 18 17 16 36 36 H 1.08003 * 125.88952 * 180.02562 * 19 18 17 37 37 H 1.09000 * 109.47241 * 7.89616 * 21 20 19 38 38 H 1.08995 * 109.46515 * 181.75661 * 24 14 13 39 39 H 1.09005 * 109.46269 * 301.72732 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4992 -0.0005 10 1 0.6257 -2.5582 0.8902 11 6 0.3700 -2.5808 -1.2502 12 6 -0.3456 -3.9343 -1.2730 13 6 0.6945 -5.0564 -1.2416 14 7 1.5113 -4.9347 -0.0274 15 6 2.4289 -6.0741 0.1062 16 6 3.4131 -6.0629 -1.0348 17 6 4.4527 -5.2153 -1.1739 18 6 5.1113 -5.5490 -2.3738 19 6 4.4488 -6.5874 -2.9227 20 7 3.4088 -6.9108 -2.1026 21 6 2.4440 -7.9891 -2.3322 22 9 2.3736 -8.8018 -1.1957 23 9 1.1838 -7.4398 -2.5916 24 6 2.2450 -3.6629 -0.0061 25 1 -0.4850 0.8400 0.0004 26 1 0.9908 -2.4819 -2.1406 27 1 -0.3679 -1.7789 -1.2297 28 1 -0.9415 -4.0156 -2.1821 29 1 -0.9961 -4.0166 -0.4022 30 1 1.3360 -4.9816 -2.1198 31 1 0.1878 -6.0214 -1.2434 32 1 1.8596 -7.0034 0.0859 33 1 2.9671 -5.9983 1.0510 34 1 4.7295 -4.4258 -0.4909 35 1 5.9856 -5.0620 -2.7800 36 1 4.7015 -7.0810 -3.8495 37 1 2.7629 -8.5861 -3.1866 38 1 2.8644 -3.6158 0.8895 39 1 2.8791 -3.5946 -0.8901 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001182855229.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:18 Heat of formation + Delta-G solvation = -41.173320 kcal Electronic energy + Delta-G solvation = -23719.238456 eV Core-core repulsion = 20105.553748 eV Total energy + Delta-G solvation = -3613.684707 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.140 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.44590 -47.51614 -41.21864 -37.99571 -33.89209 -32.28730 -31.91583 -29.79104 -28.94504 -25.76413 -25.43157 -24.83894 -21.87282 -21.48705 -20.64531 -19.97085 -18.73507 -17.90683 -17.47062 -17.37200 -16.31273 -15.20681 -15.00187 -14.57645 -14.39016 -14.18851 -13.99340 -13.84135 -13.59166 -13.26335 -13.09605 -12.81990 -12.55750 -12.30537 -12.15738 -11.98811 -11.87746 -11.44038 -11.14759 -10.87804 -10.60502 -10.54619 -10.01885 -9.75854 -9.42105 -8.98279 -8.91318 -8.64293 -8.25161 -8.01094 -7.66154 -5.91037 -3.96876 2.03367 2.20957 3.08925 3.34561 3.36400 3.40820 3.43418 3.92999 4.45461 4.49554 4.63155 4.71846 5.09652 5.31164 5.38842 5.55765 5.71318 5.82428 5.89711 6.01521 6.16180 6.23959 6.34575 6.42273 6.55207 6.59934 6.80445 6.85465 6.97395 7.06033 7.09578 7.13638 7.29351 7.46172 7.71440 7.80593 7.86286 8.15635 8.24463 8.55370 9.06958 9.66904 11.14987 Molecular weight = 284.14amu Principal moments of inertia in cm(-1) A = 0.024647 B = 0.005171 C = 0.004651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.782739 B = 5413.441948 C = 6018.256401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.063 3.937 3 Si 0.889 3.111 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.512 4.512 8 H 0.053 0.947 9 C 0.055 3.945 10 H 0.032 0.968 11 C -0.109 4.109 12 C -0.118 4.118 13 C 0.064 3.936 14 N -0.523 5.523 15 C 0.114 3.886 16 C 0.004 3.996 17 C -0.174 4.174 18 C -0.178 4.178 19 C -0.018 4.018 20 N -0.499 5.499 21 C 0.475 3.525 22 F -0.184 7.184 23 F -0.181 7.181 24 C 0.059 3.941 25 H 0.259 0.741 26 H 0.028 0.972 27 H 0.090 0.910 28 H 0.044 0.956 29 H 0.059 0.941 30 H 0.025 0.975 31 H 0.057 0.943 32 H 0.072 0.928 33 H 0.093 0.907 34 H 0.144 0.856 35 H 0.140 0.860 36 H 0.165 0.835 37 H 0.150 0.850 38 H 0.057 0.943 39 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.965 -16.765 -6.192 18.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.138 4.138 3 Si 0.718 3.282 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.550 4.550 8 H 0.071 0.929 9 C 0.037 3.963 10 H 0.050 0.950 11 C -0.147 4.147 12 C -0.155 4.155 13 C -0.064 4.064 14 N -0.245 5.245 15 C -0.016 4.016 16 C -0.105 4.105 17 C -0.198 4.198 18 C -0.203 4.203 19 C -0.143 4.143 20 N -0.189 5.189 21 C 0.340 3.660 22 F -0.166 7.166 23 F -0.163 7.163 24 C -0.067 4.067 25 H 0.069 0.931 26 H 0.047 0.953 27 H 0.108 0.892 28 H 0.063 0.937 29 H 0.078 0.922 30 H 0.043 0.957 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.111 0.889 34 H 0.161 0.839 35 H 0.158 0.842 36 H 0.183 0.817 37 H 0.167 0.833 38 H 0.075 0.925 39 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 5.184 -16.909 -5.806 18.614 hybrid contribution 0.951 0.922 -0.815 1.555 sum 6.135 -15.987 -6.621 18.359 Atomic orbital electron populations 1.69885 1.05837 1.26328 1.50801 1.24927 0.94802 0.98879 0.95229 0.86705 0.79617 0.83389 0.78531 1.20416 1.21381 1.20309 1.21107 0.92774 0.90654 1.50513 0.92892 1.18657 0.92614 0.90398 0.94676 0.94996 1.21635 0.99969 0.94588 0.98507 1.21681 0.97210 0.96614 1.00037 1.22117 0.95366 0.98640 0.90307 1.62483 1.21901 1.02385 1.37698 1.20999 0.90957 0.95936 0.93697 1.21715 1.01157 0.94791 0.92810 1.20964 0.97017 1.01826 1.00019 1.21011 1.02346 0.99310 0.97603 1.21676 0.91689 1.02627 0.98299 1.45194 1.24926 1.27621 1.21201 1.21243 0.76511 0.81338 0.86944 1.93092 1.96096 1.72273 1.55124 1.93148 1.42663 1.86590 1.93880 1.22502 0.96774 0.88020 0.99419 0.93080 0.95311 0.89192 0.93722 0.92192 0.95695 0.92424 0.90948 0.88860 0.83863 0.84190 0.81741 0.83289 0.92452 0.94582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.81 11.35 55.43 0.63 -25.18 16 2 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 3 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.51 -14.24 8.56 -34.44 -0.29 -14.53 16 8 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 9 C 0.06 1.42 2.26 -91.69 -0.21 1.21 16 10 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 11 C -0.11 -2.68 5.02 -26.61 -0.13 -2.82 16 12 C -0.12 -2.45 6.09 -26.66 -0.16 -2.62 16 13 C 0.06 1.21 4.08 -3.84 -0.02 1.20 16 14 N -0.52 -10.12 4.86 -236.13 -1.15 -11.27 16 15 C 0.11 1.84 5.71 -4.98 -0.03 1.81 16 16 C 0.00 0.07 4.77 -81.79 -0.39 -0.32 16 17 C -0.17 -2.74 8.58 -39.78 -0.34 -3.08 16 18 C -0.18 -2.39 10.86 -39.78 -0.43 -2.82 16 19 C -0.02 -0.21 11.39 -16.75 -0.19 -0.40 16 20 N -0.50 -6.46 3.02 -118.28 -0.36 -6.81 16 21 C 0.48 4.88 5.72 59.84 0.34 5.23 16 22 F -0.18 -2.09 15.95 2.25 0.04 -2.05 16 23 F -0.18 -2.30 14.60 2.25 0.03 -2.26 16 24 C 0.06 1.29 3.60 -3.84 -0.01 1.28 16 25 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 26 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 27 H 0.09 2.46 6.15 -51.93 -0.32 2.14 16 28 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.06 1.28 8.14 -51.92 -0.42 0.85 16 30 H 0.02 0.50 7.14 -51.93 -0.37 0.13 16 31 H 0.06 1.02 6.61 -51.93 -0.34 0.68 16 32 H 0.07 1.11 6.31 -51.93 -0.33 0.78 16 33 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 34 H 0.14 2.33 7.38 -52.48 -0.39 1.94 16 35 H 0.14 1.60 8.06 -52.48 -0.42 1.18 16 36 H 0.17 1.24 8.06 -52.48 -0.42 0.81 16 37 H 0.15 0.79 8.07 -51.93 -0.42 0.37 16 38 H 0.06 1.23 8.12 -51.93 -0.42 0.80 16 39 H 0.04 0.80 5.73 -51.93 -0.30 0.51 16 LS Contribution 310.99 15.07 4.69 4.69 Total: -1.00 -30.82 310.99 -8.49 -39.31 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: -5.39 Total: 1.26 kcal Atomic # 6 Polarization: -12.25 SS G_CDS: -1.96 Total: -14.21 kcal Atomic # 7 Polarization: -42.39 SS G_CDS: -0.88 Total: -43.26 kcal Atomic # 9 Polarization: -4.38 SS G_CDS: 0.07 Total: -4.32 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.82 -8.49 -39.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182855229.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.860 kcal (2) G-P(sol) polarization free energy of solvation -30.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds