Wall clock time and date at job start Tue Mar 31 2020 05:26:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99618 * 2 1 4 4 H 1.48512 * 109.47085 * 240.00105 * 3 2 1 5 5 H 1.48499 * 109.47398 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47399 * 120.00363 * 3 2 1 7 7 C 1.37874 * 120.00121 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99992 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00273 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.49995 * 299.92457 * 9 7 2 11 11 C 1.53123 * 109.50446 * 59.99598 * 9 7 2 12 12 C 1.53113 * 109.16265 * 177.59309 * 11 9 7 13 13 C 1.53031 * 109.28345 * 302.35564 * 12 11 9 14 14 N 1.46843 * 109.52703 * 59.17019 * 13 12 11 15 15 C 1.46907 * 110.99942 * 174.16479 * 14 13 12 16 16 C 1.50690 * 109.47159 * 64.30295 * 15 14 13 17 17 C 1.34852 * 125.89489 * 73.98087 * 16 15 14 18 18 C 1.40882 * 107.42049 * 180.02562 * 17 16 15 19 19 C 1.34855 * 107.41789 * 0.02562 * 18 17 16 20 20 N 1.36339 * 108.21669 * 359.73677 * 19 18 17 21 21 C 1.46494 * 125.63660 * 180.26732 * 20 19 18 22 22 F 1.39898 * 109.47476 * 127.90056 * 21 20 19 23 23 F 1.39904 * 109.46946 * 247.90121 * 21 20 19 24 24 C 1.46843 * 111.20182 * 298.26477 * 14 13 12 25 25 H 0.96997 * 120.00415 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.51542 * 57.69081 * 11 9 7 27 27 H 1.08997 * 109.57498 * 297.53721 * 11 9 7 28 28 H 1.08999 * 109.50765 * 182.40373 * 12 11 9 29 29 H 1.09009 * 109.49877 * 62.29228 * 12 11 9 30 30 H 1.09003 * 109.45961 * 299.15701 * 13 12 11 31 31 H 1.08998 * 109.46662 * 179.19687 * 13 12 11 32 32 H 1.09001 * 109.46945 * 304.29994 * 15 14 13 33 33 H 1.08998 * 109.46904 * 184.30042 * 15 14 13 34 34 H 1.08004 * 126.28446 * 0.02562 * 17 16 15 35 35 H 1.08003 * 126.29490 * 179.97438 * 18 17 16 36 36 H 1.08003 * 125.88952 * 180.02562 * 19 18 17 37 37 H 1.09000 * 109.47241 * 7.89616 * 21 20 19 38 38 H 1.08995 * 109.46515 * 181.75661 * 24 14 13 39 39 H 1.09005 * 109.46269 * 301.72732 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4992 -0.0005 10 1 0.6257 -2.5582 0.8902 11 6 0.3700 -2.5808 -1.2502 12 6 -0.3456 -3.9343 -1.2730 13 6 0.6945 -5.0564 -1.2416 14 7 1.5113 -4.9347 -0.0274 15 6 2.4289 -6.0741 0.1062 16 6 3.4131 -6.0629 -1.0348 17 6 4.4527 -5.2153 -1.1739 18 6 5.1113 -5.5490 -2.3738 19 6 4.4488 -6.5874 -2.9227 20 7 3.4088 -6.9108 -2.1026 21 6 2.4440 -7.9891 -2.3322 22 9 2.3736 -8.8018 -1.1957 23 9 1.1838 -7.4398 -2.5916 24 6 2.2450 -3.6629 -0.0061 25 1 -0.4850 0.8400 0.0004 26 1 0.9908 -2.4819 -2.1406 27 1 -0.3679 -1.7789 -1.2297 28 1 -0.9415 -4.0156 -2.1821 29 1 -0.9961 -4.0166 -0.4022 30 1 1.3360 -4.9816 -2.1198 31 1 0.1878 -6.0214 -1.2434 32 1 1.8596 -7.0034 0.0859 33 1 2.9671 -5.9983 1.0510 34 1 4.7295 -4.4258 -0.4909 35 1 5.9856 -5.0620 -2.7800 36 1 4.7015 -7.0810 -3.8495 37 1 2.7629 -8.5861 -3.1866 38 1 2.8644 -3.6158 0.8895 39 1 2.8791 -3.5946 -0.8901 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001182855229.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:18 Heat of formation + Delta-G solvation = -59.959370 kcal Electronic energy + Delta-G solvation = -23720.053080 eV Core-core repulsion = 20105.553748 eV Total energy + Delta-G solvation = -3614.499332 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.140 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.26710 -48.35217 -42.26564 -39.64153 -35.75149 -33.82024 -33.18675 -31.68494 -30.24214 -27.09676 -26.76340 -26.45638 -23.52384 -23.19361 -21.72187 -20.98939 -20.46849 -18.74585 -18.62958 -18.30176 -18.24571 -16.87279 -16.27705 -16.13223 -15.79259 -15.47903 -15.13895 -14.84964 -14.70347 -14.69228 -14.41907 -14.32517 -14.03084 -13.86495 -13.58544 -13.25873 -13.01719 -13.00506 -12.80728 -12.73710 -12.50029 -12.18699 -11.82004 -11.71025 -11.41413 -10.89525 -10.67909 -10.37771 -9.95028 -9.31686 -9.01855 -8.06688 -6.20808 1.01731 1.36576 1.41728 1.43452 1.51006 2.01339 2.43868 2.64936 3.13900 3.20063 3.28505 3.66401 3.70129 3.98290 4.16676 4.23667 4.26519 4.44991 4.54106 4.61877 4.65141 4.73530 4.75907 4.88474 4.98619 5.07528 5.17675 5.23435 5.30123 5.36484 5.49755 5.63518 5.88788 5.95467 6.01691 6.10817 6.19101 6.21150 6.26231 6.45748 6.90932 7.46726 8.98090 Molecular weight = 284.14amu Principal moments of inertia in cm(-1) A = 0.024647 B = 0.005171 C = 0.004651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.782739 B = 5413.441948 C = 6018.256401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.014 3.986 3 Si 0.954 3.046 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.534 4.534 8 H 0.051 0.949 9 C 0.053 3.947 10 H -0.005 1.005 11 C -0.099 4.099 12 C -0.113 4.113 13 C 0.078 3.922 14 N -0.534 5.534 15 C 0.118 3.882 16 C -0.020 4.020 17 C -0.195 4.195 18 C -0.208 4.208 19 C 0.011 3.989 20 N -0.502 5.502 21 C 0.467 3.533 22 F -0.193 7.193 23 F -0.197 7.197 24 C 0.081 3.919 25 H 0.260 0.740 26 H 0.017 0.983 27 H 0.059 0.941 28 H 0.066 0.934 29 H 0.052 0.948 30 H 0.019 0.981 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.095 0.905 34 H 0.124 0.876 35 H 0.154 0.846 36 H 0.215 0.785 37 H 0.212 0.788 38 H 0.053 0.947 39 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.953 -18.503 -7.918 21.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.185 4.185 3 Si 0.780 3.220 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.196 1.196 7 C -0.572 4.572 8 H 0.069 0.931 9 C 0.034 3.966 10 H 0.013 0.987 11 C -0.138 4.138 12 C -0.151 4.151 13 C -0.050 4.050 14 N -0.256 5.256 15 C -0.010 4.010 16 C -0.130 4.130 17 C -0.220 4.220 18 C -0.232 4.232 19 C -0.115 4.115 20 N -0.192 5.192 21 C 0.333 3.667 22 F -0.174 7.174 23 F -0.179 7.179 24 C -0.046 4.046 25 H 0.069 0.931 26 H 0.036 0.964 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.071 0.929 30 H 0.037 0.963 31 H 0.097 0.903 32 H 0.102 0.898 33 H 0.113 0.887 34 H 0.142 0.858 35 H 0.172 0.828 36 H 0.232 0.768 37 H 0.228 0.772 38 H 0.071 0.929 39 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 6.173 -18.673 -7.528 21.058 hybrid contribution 0.657 1.417 -0.276 1.586 sum 6.829 -17.256 -7.804 20.132 Atomic orbital electron populations 1.70032 1.07210 1.27120 1.51263 1.25723 0.95655 1.02325 0.94760 0.85674 0.78430 0.79092 0.78829 1.19725 1.20861 1.19561 1.21460 0.92933 0.92077 1.50779 0.93083 1.18591 0.92980 0.91566 0.93447 0.98726 1.21421 0.99011 0.96001 0.97346 1.21614 0.97565 0.95091 1.00781 1.21978 0.94587 0.98571 0.89860 1.62391 1.22831 1.02314 1.38078 1.20903 0.90895 0.94695 0.94551 1.21397 1.01338 0.96338 0.93894 1.21039 0.98088 1.01807 1.01078 1.21276 1.03651 1.00923 0.97307 1.22414 0.89573 1.00924 0.98576 1.45447 1.25635 1.27693 1.20388 1.22178 0.75386 0.80829 0.88332 1.93075 1.96044 1.72245 1.56040 1.93108 1.43881 1.86957 1.93930 1.22085 0.95462 0.88139 0.98928 0.93069 0.96439 0.92248 0.91568 0.92935 0.96322 0.90326 0.89820 0.88712 0.85845 0.82826 0.76837 0.77239 0.92876 0.95143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.71 11.35 21.45 0.24 -54.47 16 2 C 0.01 0.80 5.30 84.65 0.45 1.25 16 3 Si 0.95 44.78 29.54 68.60 2.03 46.80 16 4 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 5 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 6 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 7 C -0.53 -30.65 8.56 25.60 0.22 -30.43 16 8 H 0.05 2.87 7.74 -2.91 -0.02 2.85 16 9 C 0.05 2.83 2.26 -11.49 -0.03 2.80 16 10 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 11 C -0.10 -5.06 5.02 30.67 0.15 -4.91 16 12 C -0.11 -4.70 6.09 30.64 0.19 -4.51 16 13 C 0.08 2.89 4.08 86.32 0.35 3.25 16 14 N -0.53 -20.70 4.86 -900.97 -4.38 -25.08 16 15 C 0.12 3.76 5.71 85.55 0.49 4.24 16 16 C -0.02 -0.60 4.77 41.08 0.20 -0.41 16 17 C -0.19 -6.13 8.58 22.14 0.19 -5.94 16 18 C -0.21 -5.20 10.86 22.14 0.24 -4.96 16 19 C 0.01 0.20 11.39 83.22 0.95 1.15 16 20 N -0.50 -11.43 3.02 -528.11 -1.59 -13.02 16 21 C 0.47 7.74 5.72 127.77 0.73 8.47 16 22 F -0.19 -3.78 15.95 44.97 0.72 -3.06 16 23 F -0.20 -4.36 14.60 44.97 0.66 -3.71 16 24 C 0.08 3.63 3.60 86.33 0.31 3.95 16 25 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 26 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.06 3.37 6.15 -2.39 -0.01 3.36 16 28 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 29 H 0.05 2.26 8.14 -2.38 -0.02 2.24 16 30 H 0.02 0.72 7.14 -2.39 -0.02 0.71 16 31 H 0.08 2.62 6.61 -2.39 -0.02 2.61 16 32 H 0.08 2.45 6.31 -2.39 -0.02 2.43 16 33 H 0.09 2.91 8.14 -2.39 -0.02 2.89 16 34 H 0.12 4.22 7.38 -2.91 -0.02 4.20 16 35 H 0.15 3.26 8.06 -2.91 -0.02 3.23 16 36 H 0.22 1.86 8.06 -2.91 -0.02 1.84 16 37 H 0.21 0.94 8.07 -2.39 -0.02 0.92 16 38 H 0.05 2.37 8.12 -2.39 -0.02 2.35 16 39 H 0.03 1.40 5.73 -2.38 -0.01 1.39 16 Total: -1.00 -69.39 310.99 3.16 -66.23 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: 1.05 Total: 12.37 kcal Atomic # 6 Polarization: -30.50 SS G_CDS: 4.44 Total: -26.06 kcal Atomic # 7 Polarization: -86.85 SS G_CDS: -5.73 Total: -92.57 kcal Atomic # 9 Polarization: -8.14 SS G_CDS: 1.37 Total: -6.77 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.80 kcal Total: -69.39 3.16 -66.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182855229.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.269 kcal (2) G-P(sol) polarization free energy of solvation -69.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds