Wall clock time and date at job start Tue Mar 31 2020 06:14:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45206 * 109.46636 * 2 1 4 4 C 1.34221 * 116.99796 * 180.02562 * 3 2 1 5 5 O 1.20833 * 120.00232 * 359.97438 * 4 3 2 6 6 C 1.50701 * 120.00243 * 179.97438 * 4 3 2 7 7 N 1.46500 * 109.47306 * 179.97438 * 6 4 3 8 8 C 1.34781 * 119.99708 * 180.02562 * 7 6 4 9 9 O 1.21582 * 120.00159 * 359.97438 * 8 7 6 10 10 N 1.34778 * 119.99579 * 180.02562 * 8 7 6 11 11 C 1.46506 * 119.99533 * 185.25847 * 10 8 7 12 12 C 1.50698 * 110.43455 * 297.94097 * 11 10 8 13 13 H 1.08000 * 120.00038 * 122.58100 * 12 11 10 14 14 C 1.37877 * 120.00003 * 302.57880 * 12 11 10 15 15 N 1.31513 * 120.00002 * 355.00569 * 14 12 11 16 16 Si 1.86801 * 119.99774 * 175.00209 * 14 12 11 17 17 H 1.48501 * 109.47021 * 90.00288 * 16 14 12 18 18 H 1.48499 * 109.47264 * 210.00039 * 16 14 12 19 19 H 1.48496 * 109.47222 * 330.00193 * 16 14 12 20 20 C 1.54888 * 110.48535 * 60.62827 * 11 10 8 21 21 C 1.54890 * 102.74913 * 80.73722 * 20 11 10 22 22 C 1.54263 * 104.19676 * 37.93624 * 21 20 11 23 23 C 1.53875 * 106.60270 * 336.39260 * 22 21 20 24 24 H 1.08996 * 109.47361 * 60.00382 * 1 2 3 25 25 H 1.09000 * 109.46885 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47196 * 299.99972 * 1 2 3 27 27 H 1.08990 * 109.47182 * 240.00348 * 2 1 3 28 28 H 1.08996 * 109.46887 * 119.99376 * 2 1 3 29 29 H 1.09008 * 109.46694 * 60.00170 * 6 4 3 30 30 H 1.09001 * 109.47454 * 300.00283 * 6 4 3 31 31 H 0.96999 * 120.00152 * 0.02562 * 7 6 4 32 32 H 0.96995 * 120.00221 * 5.25674 * 10 8 7 33 33 H 0.97007 * 119.99773 * 184.99985 * 15 14 12 34 34 H 1.09001 * 110.75617 * 322.41835 * 20 11 10 35 35 H 1.09000 * 110.75233 * 199.04655 * 20 11 10 36 36 H 1.09003 * 110.48356 * 279.25815 * 21 20 11 37 37 H 1.08998 * 110.48953 * 156.62501 * 21 20 11 38 38 H 1.09008 * 110.02998 * 95.67793 * 22 21 20 39 39 H 1.09003 * 110.03430 * 217.05293 * 22 21 20 40 40 H 1.09000 * 110.02800 * 119.28098 * 23 22 21 41 41 H 1.08998 * 110.03009 * 240.71303 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3691 0.0000 4 6 3.3446 1.5450 -0.0005 5 8 4.0807 0.5868 -0.0005 6 6 3.9206 2.9376 -0.0012 7 7 5.3836 2.8610 -0.0010 8 6 6.1175 3.9914 -0.0010 9 8 5.5655 5.0747 -0.0015 10 7 7.4635 3.9209 -0.0014 11 6 8.2610 5.1443 0.1149 12 6 7.9980 6.0570 -1.0550 13 1 7.6435 7.0631 -0.8860 14 6 8.2101 5.6078 -2.3412 15 7 8.7343 4.4189 -2.5444 16 14 7.7528 6.6879 -3.7951 17 1 8.9135 7.5368 -4.1655 18 1 7.3774 5.8319 -4.9490 19 1 6.6040 7.5536 -3.4265 20 6 7.9535 5.8670 1.4499 21 6 8.8129 5.0802 2.4704 22 6 10.1135 4.7623 1.7042 23 6 9.7627 4.8030 0.2065 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8934 -0.5137 -0.8899 28 1 1.8933 -0.5137 0.8900 29 1 3.5849 3.4699 0.8889 30 1 3.5843 3.4695 -0.8911 31 1 5.8240 1.9967 -0.0010 32 1 7.9040 3.0602 -0.0787 33 1 8.9508 4.1318 -3.4454 34 1 6.8944 5.7898 1.6959 35 1 8.2658 6.9103 1.4051 36 1 8.3086 4.1596 2.7643 37 1 9.0257 5.6954 3.3446 38 1 10.8727 5.5112 1.9304 39 1 10.4748 3.7707 1.9770 40 1 10.3515 5.5717 -0.2940 41 1 9.9532 3.8309 -0.2481 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001189940506.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:33 Heat of formation + Delta-G solvation = -122.250797 kcal Electronic energy + Delta-G solvation = -23217.595379 eV Core-core repulsion = 19711.482404 eV Total energy + Delta-G solvation = -3506.112975 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.60638 -39.04379 -37.15754 -36.55315 -33.66132 -32.68605 -32.02088 -31.60804 -28.31416 -27.58810 -26.78459 -23.89843 -23.36626 -21.32182 -20.32378 -19.50346 -18.85572 -17.92507 -17.18113 -16.87861 -16.48434 -15.90497 -14.97663 -14.91624 -14.62951 -14.45161 -13.88044 -13.71375 -13.48714 -13.05040 -12.87072 -12.74609 -12.47127 -12.07606 -11.93309 -11.80130 -11.65647 -10.95223 -10.73126 -10.69227 -10.57812 -10.48764 -10.38472 -10.24322 -10.02127 -9.57639 -9.45053 -9.17676 -8.90527 -8.45616 -8.34009 -7.34733 -5.94585 -3.96693 2.11028 2.39207 3.35184 3.42759 3.51559 3.75417 4.42047 4.52498 4.56342 4.68677 4.75016 5.02351 5.22761 5.41457 5.49728 5.51459 5.55699 5.64683 5.71000 5.71816 5.78423 5.81962 6.26501 6.43875 6.45720 6.63014 6.74255 6.87739 6.89910 7.02420 7.12735 7.21670 7.31171 7.55516 7.63635 7.86985 7.99748 8.24612 8.46742 9.01105 9.27994 9.67901 9.88606 11.10633 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.017008 B = 0.004675 C = 0.004006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.897645 B = 5987.985819 C = 6987.910956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.061 3.939 3 O -0.356 6.356 4 C 0.461 3.539 5 O -0.507 6.507 6 C 0.154 3.846 7 N -0.758 5.758 8 C 0.707 3.293 9 O -0.586 6.586 10 N -0.695 5.695 11 C 0.312 3.688 12 C -0.492 4.492 13 H 0.058 0.942 14 C 0.073 3.927 15 N -0.885 5.885 16 Si 0.888 3.112 17 H -0.283 1.283 18 H -0.290 1.290 19 H -0.273 1.273 20 C -0.125 4.125 21 C -0.123 4.123 22 C -0.129 4.129 23 C -0.098 4.098 24 H 0.067 0.933 25 H 0.079 0.921 26 H 0.067 0.933 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.104 0.896 30 H 0.105 0.895 31 H 0.398 0.602 32 H 0.377 0.623 33 H 0.257 0.743 34 H 0.064 0.936 35 H 0.061 0.939 36 H 0.051 0.949 37 H 0.046 0.954 38 H 0.049 0.951 39 H 0.045 0.955 40 H 0.066 0.934 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.186 -8.279 6.509 13.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.012 4.012 3 O -0.272 6.272 4 C 0.304 3.696 5 O -0.394 6.394 6 C 0.028 3.972 7 N -0.421 5.421 8 C 0.407 3.593 9 O -0.464 6.464 10 N -0.346 5.346 11 C 0.229 3.771 12 C -0.531 4.531 13 H 0.076 0.924 14 C -0.130 4.130 15 N -0.523 5.523 16 Si 0.717 3.283 17 H -0.209 1.209 18 H -0.216 1.216 19 H -0.198 1.198 20 C -0.164 4.164 21 C -0.161 4.161 22 C -0.167 4.167 23 C -0.137 4.137 24 H 0.086 0.914 25 H 0.097 0.903 26 H 0.086 0.914 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.122 0.878 30 H 0.122 0.878 31 H 0.234 0.766 32 H 0.209 0.791 33 H 0.066 0.934 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.070 0.930 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.064 0.936 40 H 0.085 0.915 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -9.464 -7.697 6.384 13.768 hybrid contribution 0.156 -0.628 -1.101 1.278 sum -9.308 -8.326 5.283 13.559 Atomic orbital electron populations 1.21809 0.92558 1.02916 1.03677 1.23042 0.95388 0.80111 1.02702 1.86495 1.24179 1.32492 1.84054 1.23873 0.80761 0.92947 0.72040 1.90653 1.60274 1.43030 1.45445 1.20259 0.82403 0.88963 1.05611 1.45071 1.03775 1.09551 1.83714 1.15845 0.82524 0.82846 0.78110 1.90835 1.71242 1.26418 1.57901 1.45672 1.02660 1.10540 1.75706 1.18515 0.85992 0.81137 0.91435 1.21242 1.43310 0.98538 0.90025 0.92388 1.24897 0.94663 0.94737 0.98681 1.69925 1.42747 1.18476 1.21164 0.86647 0.78943 0.80508 0.82234 1.20936 1.21597 1.19800 1.22836 0.99085 0.98615 0.95838 1.22357 0.96707 0.99375 0.97666 1.22282 0.96990 0.99427 0.97986 1.22219 0.97598 1.01899 0.91951 0.91355 0.90273 0.91388 0.91130 0.91158 0.87816 0.87761 0.76635 0.79097 0.93356 0.91746 0.92007 0.93001 0.93515 0.93190 0.93584 0.91519 0.92008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 10.29 37.16 0.38 -0.65 16 2 C 0.06 0.59 6.19 37.16 0.23 0.82 16 3 O -0.36 -4.36 10.22 -39.23 -0.40 -4.76 16 4 C 0.46 6.52 8.03 36.01 0.29 6.81 16 5 O -0.51 -8.19 15.42 -18.76 -0.29 -8.48 16 6 C 0.15 2.35 6.27 -5.19 -0.03 2.32 16 7 N -0.76 -13.81 5.53 -66.41 -0.37 -14.18 16 8 C 0.71 15.88 7.86 -86.91 -0.68 15.20 16 9 O -0.59 -15.10 14.04 5.29 0.07 -15.03 16 10 N -0.70 -15.56 4.45 -51.94 -0.23 -15.79 16 11 C 0.31 7.36 0.32 -131.31 -0.04 7.32 16 12 C -0.49 -13.41 6.73 -34.44 -0.23 -13.64 16 13 H 0.06 1.66 7.78 -52.49 -0.41 1.25 16 14 C 0.07 1.99 5.28 -17.82 -0.09 1.89 16 15 N -0.88 -24.00 11.96 55.43 0.66 -23.34 16 16 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 17 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 18 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 19 H -0.27 -6.94 7.11 56.52 0.40 -6.54 16 20 C -0.13 -2.70 5.67 -24.74 -0.14 -2.84 16 21 C -0.12 -2.23 6.79 -25.07 -0.17 -2.40 16 22 C -0.13 -2.32 6.80 -25.61 -0.17 -2.49 16 23 C -0.10 -2.12 5.16 -25.61 -0.13 -2.25 16 24 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 25 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 26 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.07 0.68 8.13 -51.93 -0.42 0.25 16 28 H 0.07 0.65 8.13 -51.93 -0.42 0.23 16 29 H 0.10 1.46 8.14 -51.92 -0.42 1.04 16 30 H 0.10 1.61 8.14 -51.93 -0.42 1.18 16 31 H 0.40 6.85 7.46 -40.82 -0.30 6.55 16 32 H 0.38 7.93 8.29 -40.82 -0.34 7.59 16 33 H 0.26 6.84 8.32 -40.82 -0.34 6.50 16 34 H 0.06 1.48 6.41 -51.93 -0.33 1.15 16 35 H 0.06 1.34 8.05 -51.93 -0.42 0.92 16 36 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.05 0.83 8.14 -51.92 -0.42 0.41 16 39 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.07 1.54 7.83 -51.93 -0.41 1.14 16 41 H 0.06 1.38 7.57 -51.93 -0.39 0.99 16 LS Contribution 339.13 15.07 5.11 5.11 Total: -1.00 -31.17 339.13 -7.65 -38.82 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: -6.39 Total: 10.61 kcal Atomic # 6 Polarization: 10.88 SS G_CDS: -0.80 Total: 10.08 kcal Atomic # 7 Polarization: -53.37 SS G_CDS: 0.06 Total: -53.30 kcal Atomic # 8 Polarization: -27.65 SS G_CDS: -0.62 Total: -28.27 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.17 -7.65 -38.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189940506.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.433 kcal (2) G-P(sol) polarization free energy of solvation -31.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds