Wall clock time and date at job start Tue Mar 31 2020 06:14:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45206 * 109.46636 * 2 1 4 4 C 1.34221 * 116.99796 * 180.02562 * 3 2 1 5 5 O 1.20833 * 120.00232 * 359.97438 * 4 3 2 6 6 C 1.50701 * 120.00243 * 179.97438 * 4 3 2 7 7 N 1.46500 * 109.47306 * 179.97438 * 6 4 3 8 8 C 1.34781 * 119.99708 * 180.02562 * 7 6 4 9 9 O 1.21582 * 120.00159 * 359.97438 * 8 7 6 10 10 N 1.34778 * 119.99579 * 180.02562 * 8 7 6 11 11 C 1.46506 * 119.99533 * 185.25847 * 10 8 7 12 12 C 1.50698 * 110.43455 * 297.94097 * 11 10 8 13 13 H 1.08000 * 120.00038 * 122.58100 * 12 11 10 14 14 C 1.37877 * 120.00003 * 302.57880 * 12 11 10 15 15 N 1.31513 * 120.00002 * 355.00569 * 14 12 11 16 16 Si 1.86801 * 119.99774 * 175.00209 * 14 12 11 17 17 H 1.48501 * 109.47021 * 90.00288 * 16 14 12 18 18 H 1.48499 * 109.47264 * 210.00039 * 16 14 12 19 19 H 1.48496 * 109.47222 * 330.00193 * 16 14 12 20 20 C 1.54888 * 110.48535 * 60.62827 * 11 10 8 21 21 C 1.54890 * 102.74913 * 80.73722 * 20 11 10 22 22 C 1.54263 * 104.19676 * 37.93624 * 21 20 11 23 23 C 1.53875 * 106.60270 * 336.39260 * 22 21 20 24 24 H 1.08996 * 109.47361 * 60.00382 * 1 2 3 25 25 H 1.09000 * 109.46885 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47196 * 299.99972 * 1 2 3 27 27 H 1.08990 * 109.47182 * 240.00348 * 2 1 3 28 28 H 1.08996 * 109.46887 * 119.99376 * 2 1 3 29 29 H 1.09008 * 109.46694 * 60.00170 * 6 4 3 30 30 H 1.09001 * 109.47454 * 300.00283 * 6 4 3 31 31 H 0.96999 * 120.00152 * 0.02562 * 7 6 4 32 32 H 0.96995 * 120.00221 * 5.25674 * 10 8 7 33 33 H 0.97007 * 119.99773 * 184.99985 * 15 14 12 34 34 H 1.09001 * 110.75617 * 322.41835 * 20 11 10 35 35 H 1.09000 * 110.75233 * 199.04655 * 20 11 10 36 36 H 1.09003 * 110.48356 * 279.25815 * 21 20 11 37 37 H 1.08998 * 110.48953 * 156.62501 * 21 20 11 38 38 H 1.09008 * 110.02998 * 95.67793 * 22 21 20 39 39 H 1.09003 * 110.03430 * 217.05293 * 22 21 20 40 40 H 1.09000 * 110.02800 * 119.28098 * 23 22 21 41 41 H 1.08998 * 110.03009 * 240.71303 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3691 0.0000 4 6 3.3446 1.5450 -0.0005 5 8 4.0807 0.5868 -0.0005 6 6 3.9206 2.9376 -0.0012 7 7 5.3836 2.8610 -0.0010 8 6 6.1175 3.9914 -0.0010 9 8 5.5655 5.0747 -0.0015 10 7 7.4635 3.9209 -0.0014 11 6 8.2610 5.1443 0.1149 12 6 7.9980 6.0570 -1.0550 13 1 7.6435 7.0631 -0.8860 14 6 8.2101 5.6078 -2.3412 15 7 8.7343 4.4189 -2.5444 16 14 7.7528 6.6879 -3.7951 17 1 8.9135 7.5368 -4.1655 18 1 7.3774 5.8319 -4.9490 19 1 6.6040 7.5536 -3.4265 20 6 7.9535 5.8670 1.4499 21 6 8.8129 5.0802 2.4704 22 6 10.1135 4.7623 1.7042 23 6 9.7627 4.8030 0.2065 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8934 -0.5137 -0.8899 28 1 1.8933 -0.5137 0.8900 29 1 3.5849 3.4699 0.8889 30 1 3.5843 3.4695 -0.8911 31 1 5.8240 1.9967 -0.0010 32 1 7.9040 3.0602 -0.0787 33 1 8.9508 4.1318 -3.4454 34 1 6.8944 5.7898 1.6959 35 1 8.2658 6.9103 1.4051 36 1 8.3086 4.1596 2.7643 37 1 9.0257 5.6954 3.3446 38 1 10.8727 5.5112 1.9304 39 1 10.4748 3.7707 1.9770 40 1 10.3515 5.5717 -0.2940 41 1 9.9532 3.8309 -0.2481 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001189940506.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:32 Heat of formation + Delta-G solvation = -142.688387 kcal Electronic energy + Delta-G solvation = -23218.481620 eV Core-core repulsion = 19711.482404 eV Total energy + Delta-G solvation = -3506.999215 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.75616 -40.74319 -38.66558 -37.80777 -35.22909 -34.57955 -33.57085 -32.67179 -29.86573 -29.24518 -28.37271 -25.78849 -24.19348 -22.53252 -21.84357 -21.05870 -20.61598 -19.38945 -18.57108 -18.28206 -17.90644 -17.34495 -16.65859 -16.39908 -16.23632 -15.90575 -15.42851 -15.13810 -14.93013 -14.57657 -14.03067 -13.87942 -13.62886 -13.59712 -13.56343 -12.93826 -12.91625 -12.65593 -12.52263 -12.46741 -12.09530 -11.81514 -11.72840 -11.69324 -11.57353 -11.31612 -11.12303 -11.08617 -10.77724 -10.37896 -10.06673 -9.17230 -8.01763 -6.08371 0.97087 1.27946 1.36400 1.39543 1.49866 2.26733 2.46091 2.67709 3.24376 3.53735 3.84139 4.00149 4.06209 4.15453 4.19383 4.29947 4.30232 4.34046 4.38699 4.79004 4.86341 4.92784 5.02031 5.04793 5.09794 5.15181 5.23225 5.32047 5.35630 5.42601 5.45225 5.55210 5.67859 5.78759 5.85938 6.23718 6.36923 6.53043 6.59482 6.89993 7.50773 7.61797 8.12632 8.99763 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.017008 B = 0.004675 C = 0.004006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.897645 B = 5987.985819 C = 6987.910956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.052 3.948 3 O -0.354 6.354 4 C 0.474 3.526 5 O -0.528 6.528 6 C 0.151 3.849 7 N -0.748 5.748 8 C 0.703 3.297 9 O -0.623 6.623 10 N -0.693 5.693 11 C 0.302 3.698 12 C -0.509 4.509 13 H 0.032 0.968 14 C 0.038 3.962 15 N -0.893 5.893 16 Si 0.930 3.070 17 H -0.272 1.272 18 H -0.288 1.288 19 H -0.287 1.287 20 C -0.124 4.124 21 C -0.111 4.111 22 C -0.119 4.119 23 C -0.090 4.090 24 H 0.067 0.933 25 H 0.102 0.898 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.117 0.883 30 H 0.103 0.897 31 H 0.405 0.595 32 H 0.384 0.616 33 H 0.256 0.744 34 H 0.045 0.955 35 H 0.052 0.948 36 H 0.058 0.942 37 H 0.072 0.928 38 H 0.065 0.935 39 H 0.069 0.931 40 H 0.043 0.957 41 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.493 -9.473 7.453 15.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.021 4.021 3 O -0.270 6.270 4 C 0.317 3.683 5 O -0.417 6.417 6 C 0.025 3.975 7 N -0.410 5.410 8 C 0.403 3.597 9 O -0.504 6.504 10 N -0.343 5.343 11 C 0.218 3.782 12 C -0.549 4.549 13 H 0.050 0.950 14 C -0.163 4.163 15 N -0.532 5.532 16 Si 0.758 3.242 17 H -0.197 1.197 18 H -0.214 1.214 19 H -0.213 1.213 20 C -0.163 4.163 21 C -0.149 4.149 22 C -0.157 4.157 23 C -0.129 4.129 24 H 0.086 0.914 25 H 0.121 0.879 26 H 0.089 0.911 27 H 0.088 0.912 28 H 0.093 0.907 29 H 0.135 0.865 30 H 0.121 0.879 31 H 0.241 0.759 32 H 0.217 0.783 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.091 0.909 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.062 0.938 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.785 -8.930 7.328 15.139 hybrid contribution 0.148 -0.268 -1.404 1.437 sum -9.637 -9.198 5.924 14.579 Atomic orbital electron populations 1.21841 0.90207 1.04507 1.03812 1.23396 0.97201 0.78589 1.02930 1.86490 1.22718 1.34407 1.83428 1.23475 0.81354 0.91935 0.71517 1.90647 1.60933 1.43468 1.46681 1.20362 0.80630 0.90209 1.06260 1.44846 1.05001 1.08580 1.82542 1.15968 0.82633 0.83233 0.77863 1.90807 1.71890 1.28134 1.59580 1.45437 1.02818 1.10448 1.75626 1.18567 0.87277 0.81272 0.91073 1.21434 1.43263 0.98283 0.91886 0.95015 1.25338 0.94991 0.95819 1.00133 1.69970 1.43185 1.18819 1.21242 0.85998 0.78431 0.79408 0.80361 1.19740 1.21355 1.21315 1.22737 0.98696 0.98572 0.96248 1.22280 0.95773 0.99433 0.97388 1.22203 0.97325 1.01432 0.94740 1.22045 0.95834 1.00336 0.94706 0.91384 0.87927 0.91073 0.91192 0.90735 0.86494 0.87888 0.75871 0.78303 0.93467 0.93632 0.92892 0.92312 0.90917 0.91578 0.91224 0.93774 0.93009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 10.29 71.98 0.74 -0.92 16 2 C 0.05 0.91 6.19 71.98 0.45 1.35 16 3 O -0.35 -8.19 10.22 -51.33 -0.52 -8.72 16 4 C 0.47 12.90 8.03 71.24 0.57 13.47 16 5 O -0.53 -16.53 15.42 21.94 0.34 -16.19 16 6 C 0.15 4.51 6.27 85.63 0.54 5.05 16 7 N -0.75 -26.91 5.53 -482.28 -2.67 -29.58 16 8 C 0.70 31.70 7.86 179.05 1.41 33.11 16 9 O -0.62 -32.65 14.04 -3.97 -0.06 -32.70 16 10 N -0.69 -30.95 4.45 -436.49 -1.94 -32.90 16 11 C 0.30 14.30 0.32 3.93 0.00 14.30 16 12 C -0.51 -28.38 6.73 25.60 0.17 -28.21 16 13 H 0.03 1.88 7.78 -2.91 -0.02 1.86 16 14 C 0.04 2.11 5.28 84.65 0.45 2.56 16 15 N -0.89 -48.62 11.96 21.45 0.26 -48.36 16 16 Si 0.93 45.59 29.54 68.60 2.03 47.62 16 17 H -0.27 -12.73 7.11 99.48 0.71 -12.03 16 18 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 19 H -0.29 -14.64 7.11 99.48 0.71 -13.94 16 20 C -0.12 -5.32 5.67 31.88 0.18 -5.14 16 21 C -0.11 -3.73 6.79 31.67 0.22 -3.52 16 22 C -0.12 -3.96 6.80 31.32 0.21 -3.75 16 23 C -0.09 -3.86 5.16 31.32 0.16 -3.70 16 24 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 25 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.07 1.24 8.13 -2.39 -0.02 1.22 16 28 H 0.07 1.25 8.13 -2.39 -0.02 1.23 16 29 H 0.12 3.21 8.14 -2.38 -0.02 3.19 16 30 H 0.10 3.15 8.14 -2.39 -0.02 3.13 16 31 H 0.40 13.63 7.46 -92.71 -0.69 12.94 16 32 H 0.38 15.97 8.29 -92.71 -0.77 15.20 16 33 H 0.26 13.61 8.32 -92.70 -0.77 12.84 16 34 H 0.04 2.11 6.41 -2.39 -0.02 2.09 16 35 H 0.05 2.31 8.05 -2.39 -0.02 2.29 16 36 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 38 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16 39 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 40 H 0.04 2.04 7.83 -2.39 -0.02 2.03 16 41 H 0.05 2.28 7.57 -2.39 -0.02 2.26 16 Total: -1.00 -67.06 339.13 2.10 -64.96 By element: Atomic # 1 Polarization: 31.68 SS G_CDS: -0.42 Total: 31.26 kcal Atomic # 6 Polarization: 19.52 SS G_CDS: 5.09 Total: 24.61 kcal Atomic # 7 Polarization: -106.48 SS G_CDS: -4.36 Total: -110.84 kcal Atomic # 8 Polarization: -57.37 SS G_CDS: -0.24 Total: -57.61 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Total: -67.06 2.10 -64.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189940506.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.733 kcal (2) G-P(sol) polarization free energy of solvation -67.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds