Wall clock time and date at job start Tue Mar 31 2020 06:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34231 * 116.99923 * 2 1 4 4 O 1.20817 * 119.99991 * 359.97438 * 3 2 1 5 5 C 1.50696 * 119.99786 * 180.02562 * 3 2 1 6 6 H 1.08996 * 109.47483 * 59.99883 * 5 3 2 7 7 C 1.53005 * 109.46941 * 299.99813 * 5 3 2 8 8 N 1.46505 * 109.47062 * 179.97438 * 5 3 2 9 9 C 1.34770 * 119.99977 * 204.99511 * 8 5 3 10 10 O 1.21590 * 120.00317 * 0.02562 * 9 8 5 11 11 N 1.34779 * 119.99821 * 180.02562 * 9 8 5 12 12 C 1.46507 * 119.99974 * 175.03302 * 11 9 8 13 13 C 1.50698 * 110.01718 * 62.66916 * 12 11 9 14 14 H 1.08008 * 119.99676 * 237.42589 * 13 12 11 15 15 C 1.37875 * 120.00315 * 57.42112 * 13 12 11 16 16 N 1.31515 * 119.99728 * 354.44136 * 15 13 12 17 17 Si 1.86792 * 120.00287 * 174.43430 * 15 13 12 18 18 H 1.48501 * 109.47390 * 90.00253 * 17 15 13 19 19 H 1.48497 * 109.47306 * 210.00469 * 17 15 13 20 20 H 1.48505 * 109.47043 * 330.00363 * 17 15 13 21 21 C 1.54266 * 110.02715 * 301.22663 * 12 11 9 22 22 C 1.54891 * 104.19486 * 217.10538 * 21 12 11 23 23 C 1.54893 * 102.74803 * 37.94163 * 22 21 12 24 24 C 1.53868 * 110.03016 * 184.06208 * 12 11 9 25 25 H 1.09005 * 109.47366 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47394 * 299.99791 * 1 2 3 27 27 H 1.08999 * 109.47154 * 60.00208 * 1 2 3 28 28 H 1.08999 * 109.46564 * 180.02562 * 7 5 3 29 29 H 1.08999 * 109.47105 * 60.00880 * 7 5 3 30 30 H 1.08993 * 109.47270 * 299.99812 * 7 5 3 31 31 H 0.96999 * 119.99392 * 25.00128 * 8 5 3 32 32 H 0.96996 * 119.99851 * 355.02963 * 11 9 8 33 33 H 0.96998 * 120.00299 * 185.02190 * 16 15 13 34 34 H 1.08996 * 110.49338 * 335.78451 * 21 12 11 35 35 H 1.09004 * 110.48728 * 98.42896 * 21 12 11 36 36 H 1.09002 * 110.75599 * 279.63311 * 22 21 12 37 37 H 1.08997 * 110.91976 * 156.33267 * 22 21 12 38 38 H 1.08995 * 110.48522 * 203.37724 * 23 22 21 39 39 H 1.09006 * 110.48184 * 80.73940 * 23 22 21 40 40 H 1.09000 * 110.03312 * 238.56260 * 24 12 11 41 41 H 1.08997 * 110.03647 * 359.97438 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5662 1.2748 -0.0006 6 1 3.9557 0.7809 -0.8908 7 6 4.1137 0.5810 1.2484 8 7 3.9817 2.6798 -0.0011 9 6 5.1870 3.0259 -0.4948 10 8 5.9295 2.1723 -0.9402 11 7 5.5693 4.3183 -0.4948 12 6 6.9200 4.6827 -0.9299 13 6 7.1149 4.3069 -2.3762 14 1 7.9176 3.6412 -2.6577 15 6 6.2687 4.8127 -3.3400 16 7 5.2270 5.5339 -2.9875 17 14 6.6019 4.4738 -5.1465 18 1 5.9116 3.2228 -5.5510 19 1 6.0955 5.6052 -5.9641 20 1 8.0638 4.3238 -5.3606 21 6 7.9684 3.9693 -0.0514 22 6 9.1009 5.0134 0.1117 23 6 8.3215 6.3455 0.2425 24 6 7.1444 6.1934 -0.7429 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 5.2022 0.6385 1.2481 29 1 3.8048 -0.4643 1.2482 30 1 3.7244 1.0750 2.1385 31 1 3.3892 3.3607 0.3540 32 1 4.9502 5.0072 -0.2067 33 1 4.5915 5.8284 -3.6586 34 1 7.5429 3.7134 0.9188 35 1 8.3421 3.0764 -0.5526 36 1 9.7437 5.0268 -0.7685 37 1 9.6844 4.8173 1.0112 38 1 8.9528 7.1865 -0.0441 39 1 7.9529 6.4734 1.2603 40 1 7.3952 6.6546 -1.6981 41 1 6.2483 6.6556 -0.3289 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001190582467.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:33 Heat of formation + Delta-G solvation = -116.887565 kcal Electronic energy + Delta-G solvation = -23742.122576 eV Core-core repulsion = 20236.242168 eV Total energy + Delta-G solvation = -3505.880408 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.60185 -38.99494 -37.18192 -36.40656 -34.34137 -32.71842 -31.85681 -30.10220 -27.79544 -27.64878 -26.95973 -24.41701 -23.86613 -21.08607 -19.99311 -19.63173 -18.83876 -18.01465 -17.21223 -16.52772 -16.28061 -16.18611 -15.01006 -14.67325 -14.28010 -14.17571 -13.88204 -13.73348 -13.30247 -12.97667 -12.70169 -12.51196 -12.35392 -12.06204 -12.03302 -11.50990 -11.39654 -10.89679 -10.87421 -10.76839 -10.61686 -10.36897 -10.29359 -10.16698 -10.00151 -9.70890 -9.34216 -9.15416 -8.86701 -8.45612 -8.36364 -7.32382 -5.92906 -3.96218 2.19790 2.53058 3.36129 3.42715 3.46917 3.75964 4.45519 4.52933 4.70575 4.99096 5.06601 5.20858 5.26544 5.34492 5.40937 5.57403 5.73668 5.76677 5.80575 5.85818 5.99022 6.23011 6.35474 6.43164 6.48334 6.64949 6.73816 6.84421 6.90710 7.06010 7.09974 7.13766 7.32791 7.57347 7.71909 7.90657 8.02680 8.25571 8.48358 9.01873 9.33545 9.67779 9.95223 11.11069 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.016899 B = 0.005545 C = 0.004691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.549414 B = 5048.111181 C = 5967.486898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.356 6.356 3 C 0.459 3.541 4 O -0.502 6.502 5 C 0.178 3.822 6 H 0.123 0.877 7 C -0.154 4.154 8 N -0.750 5.750 9 C 0.709 3.291 10 O -0.588 6.588 11 N -0.696 5.696 12 C 0.309 3.691 13 C -0.489 4.489 14 H 0.059 0.941 15 C 0.070 3.930 16 N -0.882 5.882 17 Si 0.887 3.113 18 H -0.284 1.284 19 H -0.289 1.289 20 H -0.274 1.274 21 C -0.114 4.114 22 C -0.119 4.119 23 C -0.125 4.125 24 C -0.097 4.097 25 H 0.100 0.900 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.056 0.944 31 H 0.396 0.604 32 H 0.376 0.624 33 H 0.257 0.743 34 H 0.040 0.960 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.046 0.954 38 H 0.050 0.950 39 H 0.049 0.951 40 H 0.071 0.929 41 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.324 -6.018 9.064 12.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.272 6.272 3 C 0.301 3.699 4 O -0.389 6.389 5 C 0.070 3.930 6 H 0.140 0.860 7 C -0.213 4.213 8 N -0.411 5.411 9 C 0.409 3.591 10 O -0.465 6.465 11 N -0.346 5.346 12 C 0.225 3.775 13 C -0.528 4.528 14 H 0.077 0.923 15 C -0.132 4.132 16 N -0.520 5.520 17 Si 0.716 3.284 18 H -0.210 1.210 19 H -0.215 1.215 20 H -0.199 1.199 21 C -0.153 4.153 22 C -0.157 4.157 23 C -0.163 4.163 24 C -0.136 4.136 25 H 0.119 0.881 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.100 0.900 29 H 0.090 0.910 30 H 0.075 0.925 31 H 0.230 0.770 32 H 0.208 0.792 33 H 0.066 0.934 34 H 0.059 0.941 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.065 0.935 38 H 0.069 0.931 39 H 0.067 0.933 40 H 0.090 0.910 41 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -4.926 -6.311 8.553 11.715 hybrid contribution -1.077 0.535 -0.925 1.518 sum -6.003 -5.776 7.628 11.295 Atomic orbital electron populations 1.23259 0.76482 1.03564 1.02573 1.86505 1.23276 1.33251 1.84178 1.24129 0.92366 0.81432 0.71973 1.90657 1.66918 1.36328 1.44953 1.19961 0.84837 0.85694 1.02510 0.85950 1.22136 1.03369 1.00105 0.95715 1.45128 1.19801 1.06334 1.69827 1.15834 0.80305 0.84559 0.78423 1.90816 1.53561 1.49771 1.52401 1.45839 1.16630 1.03860 1.68222 1.18483 0.76895 0.89597 0.92479 1.21281 1.14520 1.26930 0.90079 0.92330 1.24916 0.95321 0.94441 0.98550 1.69920 1.12061 1.36572 1.33489 0.86662 0.78599 0.77497 0.85654 1.21004 1.21547 1.19858 1.22652 0.96141 0.98155 0.98314 1.22401 0.97657 0.95772 0.99880 1.22392 0.98057 0.97018 0.98854 1.22226 0.95325 0.97728 0.98290 0.88111 0.91958 0.91872 0.90023 0.90957 0.92459 0.76977 0.79218 0.93364 0.94080 0.91659 0.91756 0.93540 0.93110 0.93251 0.91004 0.93683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.33 10.56 101.05 1.07 1.40 16 2 O -0.36 -4.56 10.47 -39.26 -0.41 -4.97 16 3 C 0.46 7.00 7.32 36.00 0.26 7.26 16 4 O -0.50 -8.78 15.59 -18.74 -0.29 -9.07 16 5 C 0.18 2.86 3.09 -69.08 -0.21 2.65 16 6 H 0.12 2.13 7.57 -51.93 -0.39 1.74 16 7 C -0.15 -2.03 9.42 37.16 0.35 -1.68 16 8 N -0.75 -13.95 4.96 -59.81 -0.30 -14.24 16 9 C 0.71 16.04 7.94 -86.92 -0.69 15.35 16 10 O -0.59 -15.11 14.23 5.29 0.08 -15.03 16 11 N -0.70 -15.71 4.13 -52.45 -0.22 -15.93 16 12 C 0.31 7.25 0.50 -131.85 -0.07 7.18 16 13 C -0.49 -13.25 6.67 -34.44 -0.23 -13.48 16 14 H 0.06 1.67 7.54 -52.48 -0.40 1.27 16 15 C 0.07 1.93 5.01 -17.82 -0.09 1.84 16 16 N -0.88 -24.16 12.03 55.43 0.67 -23.49 16 17 Si 0.89 21.96 29.54 -169.99 -5.02 16.93 16 18 H -0.28 -7.22 7.11 56.52 0.40 -6.82 16 19 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 20 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 21 C -0.11 -2.45 4.85 -25.07 -0.12 -2.57 16 22 C -0.12 -2.19 6.91 -24.74 -0.17 -2.36 16 23 C -0.13 -2.25 6.83 -25.07 -0.17 -2.42 16 24 C -0.10 -2.09 5.56 -25.62 -0.14 -2.23 16 25 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16 27 H 0.06 0.62 8.13 -51.93 -0.42 0.20 16 28 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.07 0.79 8.11 -51.93 -0.42 0.37 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.40 6.93 7.81 -40.82 -0.32 6.61 16 32 H 0.38 8.01 8.09 -40.82 -0.33 7.68 16 33 H 0.26 6.94 8.32 -40.82 -0.34 6.60 16 34 H 0.04 0.85 8.02 -51.93 -0.42 0.44 16 35 H 0.06 1.53 7.48 -51.93 -0.39 1.14 16 36 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.07 1.71 7.43 -51.93 -0.39 1.32 16 41 H 0.04 0.95 7.45 -51.93 -0.39 0.56 16 LS Contribution 338.00 15.07 5.09 5.09 Total: -1.00 -31.32 338.00 -6.99 -38.31 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: -6.38 Total: 11.46 kcal Atomic # 6 Polarization: 11.15 SS G_CDS: -0.21 Total: 10.93 kcal Atomic # 7 Polarization: -53.81 SS G_CDS: 0.15 Total: -53.66 kcal Atomic # 8 Polarization: -28.45 SS G_CDS: -0.63 Total: -29.07 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.32 -6.99 -38.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190582467.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.575 kcal (2) G-P(sol) polarization free energy of solvation -31.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds