Wall clock time and date at job start Tue Mar 31 2020 06:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34231 * 116.99923 * 2 1 4 4 O 1.20817 * 119.99991 * 359.97438 * 3 2 1 5 5 C 1.50696 * 119.99786 * 180.02562 * 3 2 1 6 6 H 1.08996 * 109.47483 * 59.99883 * 5 3 2 7 7 C 1.53005 * 109.46941 * 299.99813 * 5 3 2 8 8 N 1.46505 * 109.47062 * 179.97438 * 5 3 2 9 9 C 1.34770 * 119.99977 * 204.99511 * 8 5 3 10 10 O 1.21590 * 120.00317 * 0.02562 * 9 8 5 11 11 N 1.34779 * 119.99821 * 180.02562 * 9 8 5 12 12 C 1.46507 * 119.99974 * 175.03302 * 11 9 8 13 13 C 1.50698 * 110.01718 * 62.66916 * 12 11 9 14 14 H 1.08008 * 119.99676 * 237.42589 * 13 12 11 15 15 C 1.37875 * 120.00315 * 57.42112 * 13 12 11 16 16 N 1.31515 * 119.99728 * 354.44136 * 15 13 12 17 17 Si 1.86792 * 120.00287 * 174.43430 * 15 13 12 18 18 H 1.48501 * 109.47390 * 90.00253 * 17 15 13 19 19 H 1.48497 * 109.47306 * 210.00469 * 17 15 13 20 20 H 1.48505 * 109.47043 * 330.00363 * 17 15 13 21 21 C 1.54266 * 110.02715 * 301.22663 * 12 11 9 22 22 C 1.54891 * 104.19486 * 217.10538 * 21 12 11 23 23 C 1.54893 * 102.74803 * 37.94163 * 22 21 12 24 24 C 1.53868 * 110.03016 * 184.06208 * 12 11 9 25 25 H 1.09005 * 109.47366 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47394 * 299.99791 * 1 2 3 27 27 H 1.08999 * 109.47154 * 60.00208 * 1 2 3 28 28 H 1.08999 * 109.46564 * 180.02562 * 7 5 3 29 29 H 1.08999 * 109.47105 * 60.00880 * 7 5 3 30 30 H 1.08993 * 109.47270 * 299.99812 * 7 5 3 31 31 H 0.96999 * 119.99392 * 25.00128 * 8 5 3 32 32 H 0.96996 * 119.99851 * 355.02963 * 11 9 8 33 33 H 0.96998 * 120.00299 * 185.02190 * 16 15 13 34 34 H 1.08996 * 110.49338 * 335.78451 * 21 12 11 35 35 H 1.09004 * 110.48728 * 98.42896 * 21 12 11 36 36 H 1.09002 * 110.75599 * 279.63311 * 22 21 12 37 37 H 1.08997 * 110.91976 * 156.33267 * 22 21 12 38 38 H 1.08995 * 110.48522 * 203.37724 * 23 22 21 39 39 H 1.09006 * 110.48184 * 80.73940 * 23 22 21 40 40 H 1.09000 * 110.03312 * 238.56260 * 24 12 11 41 41 H 1.08997 * 110.03647 * 359.97438 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5662 1.2748 -0.0006 6 1 3.9557 0.7809 -0.8908 7 6 4.1137 0.5810 1.2484 8 7 3.9817 2.6798 -0.0011 9 6 5.1870 3.0259 -0.4948 10 8 5.9295 2.1723 -0.9402 11 7 5.5693 4.3183 -0.4948 12 6 6.9200 4.6827 -0.9299 13 6 7.1149 4.3069 -2.3762 14 1 7.9176 3.6412 -2.6577 15 6 6.2687 4.8127 -3.3400 16 7 5.2270 5.5339 -2.9875 17 14 6.6019 4.4738 -5.1465 18 1 5.9116 3.2228 -5.5510 19 1 6.0955 5.6052 -5.9641 20 1 8.0638 4.3238 -5.3606 21 6 7.9684 3.9693 -0.0514 22 6 9.1009 5.0134 0.1117 23 6 8.3215 6.3455 0.2425 24 6 7.1444 6.1934 -0.7429 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 5.2022 0.6385 1.2481 29 1 3.8048 -0.4643 1.2482 30 1 3.7244 1.0750 2.1385 31 1 3.3892 3.3607 0.3540 32 1 4.9502 5.0072 -0.2067 33 1 4.5915 5.8284 -3.6586 34 1 7.5429 3.7134 0.9188 35 1 8.3421 3.0764 -0.5526 36 1 9.7437 5.0268 -0.7685 37 1 9.6844 4.8173 1.0112 38 1 8.9528 7.1865 -0.0441 39 1 7.9529 6.4734 1.2603 40 1 7.3952 6.6546 -1.6981 41 1 6.2483 6.6556 -0.3289 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001190582467.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:33 Heat of formation + Delta-G solvation = -137.650572 kcal Electronic energy + Delta-G solvation = -23743.022927 eV Core-core repulsion = 20236.242168 eV Total energy + Delta-G solvation = -3506.780759 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.83176 -40.68793 -38.76132 -37.65103 -35.83942 -34.59098 -33.77382 -31.54308 -29.32010 -28.85354 -28.55950 -25.99387 -25.39605 -22.46795 -21.49991 -21.16658 -20.65621 -19.55273 -18.54309 -18.20679 -17.65768 -17.51917 -16.64377 -16.45868 -15.87310 -15.75181 -15.49309 -14.98874 -14.79772 -14.40629 -14.30973 -14.03271 -13.66418 -13.34345 -13.29471 -12.98366 -12.88361 -12.68508 -12.58217 -12.46777 -12.19749 -11.86184 -11.74112 -11.63043 -11.54772 -11.27333 -11.19684 -11.09476 -10.74237 -10.42451 -10.06741 -9.17074 -8.00854 -6.08546 0.98314 1.33005 1.37503 1.39257 1.46303 2.27254 2.45157 2.72579 3.22444 3.58199 3.86641 4.05277 4.10892 4.13071 4.21495 4.29051 4.32380 4.34839 4.68338 4.75154 4.81191 4.84239 5.01849 5.03004 5.11989 5.15793 5.24590 5.28333 5.28876 5.35654 5.47221 5.60506 5.67436 5.80278 5.85872 6.26291 6.37898 6.54368 6.60399 6.90818 7.51455 7.64244 8.17759 8.98964 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.016899 B = 0.005545 C = 0.004691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.549414 B = 5048.111181 C = 5967.486898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.352 6.352 3 C 0.469 3.531 4 O -0.528 6.528 5 C 0.172 3.828 6 H 0.106 0.894 7 C -0.143 4.143 8 N -0.741 5.741 9 C 0.705 3.295 10 O -0.624 6.624 11 N -0.695 5.695 12 C 0.298 3.702 13 C -0.501 4.501 14 H 0.033 0.967 15 C 0.033 3.967 16 N -0.893 5.893 17 Si 0.929 3.071 18 H -0.295 1.295 19 H -0.281 1.281 20 H -0.271 1.271 21 C -0.108 4.108 22 C -0.113 4.113 23 C -0.114 4.114 24 C -0.092 4.092 25 H 0.138 0.862 26 H 0.068 0.932 27 H 0.057 0.943 28 H 0.063 0.937 29 H 0.098 0.902 30 H 0.071 0.929 31 H 0.402 0.598 32 H 0.382 0.618 33 H 0.254 0.746 34 H 0.047 0.953 35 H 0.034 0.966 36 H 0.055 0.945 37 H 0.078 0.922 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.042 0.958 41 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.771 -6.168 10.544 13.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.268 6.268 3 C 0.312 3.688 4 O -0.417 6.417 5 C 0.064 3.936 6 H 0.123 0.877 7 C -0.201 4.201 8 N -0.401 5.401 9 C 0.405 3.595 10 O -0.504 6.504 11 N -0.345 5.345 12 C 0.214 3.786 13 C -0.540 4.540 14 H 0.051 0.949 15 C -0.168 4.168 16 N -0.532 5.532 17 Si 0.758 3.242 18 H -0.222 1.222 19 H -0.206 1.206 20 H -0.195 1.195 21 C -0.147 4.147 22 C -0.150 4.150 23 C -0.152 4.152 24 C -0.131 4.131 25 H 0.156 0.844 26 H 0.087 0.913 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.117 0.883 30 H 0.090 0.910 31 H 0.238 0.762 32 H 0.215 0.785 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.053 0.947 36 H 0.074 0.926 37 H 0.097 0.903 38 H 0.089 0.911 39 H 0.091 0.909 40 H 0.061 0.939 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -5.402 -6.470 10.050 13.116 hybrid contribution -1.018 0.471 -1.391 1.787 sum -6.419 -5.999 8.659 12.336 Atomic orbital electron populations 1.23636 0.74225 1.06089 1.02645 1.86486 1.25335 1.31510 1.83436 1.23794 0.91798 0.81818 0.71405 1.90649 1.67323 1.37295 1.46400 1.20123 0.85973 0.84157 1.03358 0.87679 1.22049 1.02034 1.01483 0.94577 1.44937 1.18524 1.07852 1.68829 1.15960 0.81071 0.84200 0.78261 1.90788 1.54976 1.50635 1.54028 1.45656 1.16630 1.04135 1.68078 1.18582 0.77794 0.91153 0.91086 1.21439 1.13807 1.26242 0.92508 0.94892 1.25383 0.95541 0.94825 1.01034 1.69975 1.12262 1.37177 1.33783 0.86006 0.78427 0.76916 0.82899 1.22220 1.20619 1.19522 1.22519 0.96781 0.97724 0.97661 1.22377 0.96752 0.94824 1.01086 1.22341 0.96550 0.97316 0.98989 1.22080 0.97114 0.95807 0.98056 0.84390 0.91320 0.92442 0.91779 0.88320 0.91031 0.76225 0.78527 0.93691 0.93450 0.94674 0.92594 0.90300 0.91114 0.90895 0.93861 0.93484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.56 113.37 1.20 1.64 16 2 O -0.35 -8.34 10.47 -51.43 -0.54 -8.88 16 3 C 0.47 13.81 7.32 71.23 0.52 14.33 16 4 O -0.53 -18.04 15.59 21.99 0.34 -17.70 16 5 C 0.17 5.44 3.09 44.24 0.14 5.57 16 6 H 0.11 3.73 7.57 -2.39 -0.02 3.71 16 7 C -0.14 -3.57 9.42 71.98 0.68 -2.89 16 8 N -0.74 -27.59 4.96 -461.41 -2.29 -29.87 16 9 C 0.71 32.36 7.94 179.06 1.42 33.78 16 10 O -0.62 -32.94 14.23 -4.00 -0.06 -33.00 16 11 N -0.70 -31.61 4.13 -438.11 -1.81 -33.42 16 12 C 0.30 14.09 0.50 3.58 0.00 14.09 16 13 C -0.50 -27.82 6.67 25.60 0.17 -27.65 16 14 H 0.03 1.95 7.54 -2.91 -0.02 1.93 16 15 C 0.03 1.83 5.01 84.65 0.42 2.25 16 16 N -0.89 -49.43 12.03 21.45 0.26 -49.17 16 17 Si 0.93 45.76 29.54 68.60 2.03 47.79 16 18 H -0.30 -15.00 7.11 99.48 0.71 -14.29 16 19 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 20 H -0.27 -13.04 7.11 99.48 0.71 -12.34 16 21 C -0.11 -4.63 4.85 31.67 0.15 -4.47 16 22 C -0.11 -3.92 6.91 31.89 0.22 -3.70 16 23 C -0.11 -3.80 6.83 31.67 0.22 -3.58 16 24 C -0.09 -3.89 5.56 31.32 0.17 -3.72 16 25 H 0.14 1.26 8.14 -2.38 -0.02 1.24 16 26 H 0.07 1.08 8.13 -2.39 -0.02 1.06 16 27 H 0.06 1.04 8.13 -2.39 -0.02 1.02 16 28 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.10 1.93 8.11 -2.39 -0.02 1.92 16 30 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.40 13.97 7.81 -92.71 -0.72 13.24 16 32 H 0.38 16.26 8.09 -92.71 -0.75 15.51 16 33 H 0.25 13.83 8.32 -92.71 -0.77 13.06 16 34 H 0.05 1.93 8.02 -2.39 -0.02 1.91 16 35 H 0.03 1.68 7.48 -2.39 -0.02 1.66 16 36 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 38 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16 40 H 0.04 2.06 7.43 -2.39 -0.02 2.04 16 41 H 0.05 1.94 7.45 -2.39 -0.02 1.92 16 Total: -1.00 -68.60 338.00 2.82 -65.78 By element: Atomic # 1 Polarization: 33.23 SS G_CDS: -0.43 Total: 32.80 kcal Atomic # 6 Polarization: 20.35 SS G_CDS: 5.32 Total: 25.67 kcal Atomic # 7 Polarization: -108.63 SS G_CDS: -3.84 Total: -112.46 kcal Atomic # 8 Polarization: -59.32 SS G_CDS: -0.25 Total: -59.57 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Total: -68.60 2.82 -65.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190582467.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.871 kcal (2) G-P(sol) polarization free energy of solvation -68.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds