Wall clock time and date at job start Tue Mar 31 2020 06:33:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 119.99875 * 2 1 4 4 H 1.48504 * 109.47225 * 270.00042 * 3 2 1 5 5 H 1.48504 * 109.47365 * 29.99829 * 3 2 1 6 6 H 1.48497 * 109.47167 * 150.00008 * 3 2 1 7 7 C 1.38807 * 120.00255 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99955 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99733 * 359.97438 * 7 2 1 10 10 C 1.46505 * 120.00009 * 180.02562 * 9 7 2 11 11 H 1.08999 * 112.88270 * 26.84194 * 10 9 7 12 12 C 1.53949 * 113.66050 * 255.50109 * 10 9 7 13 13 C 1.53959 * 87.29253 * 220.69707 * 12 10 9 14 14 H 1.08999 * 113.65866 * 139.29879 * 13 12 10 15 15 N 1.46499 * 113.66417 * 270.26389 * 13 12 10 16 16 C 1.34777 * 119.99665 * 254.26436 * 15 13 12 17 17 O 1.21283 * 119.99990 * 359.71991 * 16 15 13 18 18 C 1.50698 * 119.99538 * 179.72653 * 16 15 13 19 19 C 1.52999 * 109.47004 * 179.97438 * 18 16 15 20 20 C 1.52998 * 109.47303 * 179.97438 * 19 18 16 21 21 F 1.39904 * 109.47146 * 179.97438 * 20 19 18 22 22 C 1.52904 * 86.88083 * 24.78215 * 13 12 10 23 23 C 1.52917 * 121.14254 * 209.33201 * 22 13 12 24 24 C 1.53953 * 86.78182 * 209.37779 * 23 22 13 25 25 C 1.52914 * 121.14136 * 100.76754 * 22 13 12 26 26 H 0.97005 * 119.99863 * 0.02562 * 1 2 3 27 27 H 0.97001 * 120.00528 * 0.02562 * 9 7 2 28 28 H 1.08998 * 113.58020 * 106.09966 * 12 10 9 29 29 H 1.08996 * 113.65411 * 335.31137 * 12 10 9 30 30 H 0.97001 * 119.99790 * 73.98149 * 15 13 12 31 31 H 1.09003 * 109.47112 * 299.99065 * 18 16 15 32 32 H 1.08993 * 109.47916 * 59.99687 * 18 16 15 33 33 H 1.09000 * 109.47527 * 299.99994 * 19 18 16 34 34 H 1.09007 * 109.47302 * 59.99534 * 19 18 16 35 35 H 1.08995 * 109.47540 * 300.00020 * 20 19 18 36 36 H 1.09001 * 109.46719 * 60.00219 * 20 19 18 37 37 H 1.08999 * 113.65566 * 323.85560 * 23 22 13 38 38 H 1.09001 * 113.66201 * 94.90287 * 23 22 13 39 39 H 1.08993 * 113.57707 * 270.12684 * 24 23 22 40 40 H 1.09003 * 113.57569 * 139.34193 * 24 23 22 41 41 H 1.08997 * 113.66464 * 265.09738 * 25 22 13 42 42 H 1.09001 * 113.65683 * 36.15485 * 25 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 1 3.0460 -3.5758 0.4529 12 6 2.0613 -4.3683 -1.3657 13 6 1.8558 -5.6864 -0.5971 14 1 1.1490 -6.3653 -1.0742 15 7 3.1071 -6.3444 -0.2130 16 6 3.5184 -7.4465 -0.8707 17 8 2.8500 -7.8966 -1.7772 18 6 4.8087 -8.1197 -0.4796 19 6 5.0403 -9.3380 -1.3757 20 6 6.3506 -10.0211 -0.9791 21 9 6.5621 -11.1355 -1.7982 22 6 1.2385 -4.8425 0.5185 23 6 1.3197 -5.2831 1.9806 24 6 -0.0098 -4.5354 2.1893 25 6 -0.2779 -4.7424 0.6876 26 1 -0.4850 0.8401 -0.0004 27 1 0.3556 -2.3881 -0.0005 28 1 3.0179 -4.3111 -1.8850 29 1 1.2182 -4.0983 -2.0015 30 1 3.6416 -5.9843 0.5119 31 1 5.6348 -7.4186 -0.5984 32 1 4.7507 -8.4401 0.5606 33 1 4.2141 -10.0390 -1.2567 34 1 5.0981 -9.0180 -2.4162 35 1 7.1766 -9.3201 -1.0985 36 1 6.2930 -10.3411 0.0613 37 1 1.2413 -6.3617 2.1173 38 1 2.1576 -4.8457 2.5235 39 1 0.1175 -3.4898 2.4695 40 1 -0.7110 -5.0646 2.8346 41 1 -0.7163 -3.8730 0.1976 42 1 -0.8054 -5.6690 0.4611 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001203274024.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:58 Heat of formation + Delta-G solvation = -48.135180 kcal Electronic energy + Delta-G solvation = -22579.475229 eV Core-core repulsion = 19088.948937 eV Total energy + Delta-G solvation = -3490.526291 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.164 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -47.85779 -40.64736 -39.09065 -35.10570 -34.21208 -34.05489 -32.25066 -29.93719 -27.56168 -25.48359 -24.64595 -24.15351 -22.76534 -21.87949 -20.67112 -19.98342 -17.99919 -17.40453 -16.86580 -16.78958 -16.15700 -15.72231 -15.35417 -15.18657 -14.97382 -14.71810 -14.14703 -13.84560 -13.50002 -13.35972 -12.62432 -12.51771 -12.22691 -12.04590 -11.85798 -11.75135 -11.65835 -11.39003 -11.30876 -10.94691 -10.91721 -10.84170 -10.64241 -10.19990 -10.16991 -9.88855 -9.83667 -9.63757 -9.41721 -8.87993 -8.70905 -7.00327 -5.83061 -3.11714 2.63801 3.13147 3.39405 3.44739 3.46288 4.32645 4.44399 4.45259 4.53823 4.71015 4.75692 4.93360 4.95621 5.00640 5.07133 5.20851 5.22587 5.25038 5.41528 5.42667 5.66737 5.67316 5.82136 5.92443 5.94789 5.97213 6.02903 6.08079 6.16440 6.27171 6.39218 6.48205 6.54599 6.63425 6.84936 6.90298 7.04212 7.59208 7.64587 8.27257 8.35757 9.47350 10.04634 10.39391 11.39199 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.022401 B = 0.003420 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.620036 B = 8185.823669 C = 8919.127095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.011 4.011 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.244 4.244 8 H 0.070 0.930 9 N -0.709 5.709 10 C 0.192 3.808 11 H 0.074 0.926 12 C -0.174 4.174 13 C 0.129 3.871 14 H 0.094 0.906 15 N -0.704 5.704 16 C 0.512 3.488 17 O -0.544 6.544 18 C -0.140 4.140 19 C -0.138 4.138 20 C 0.061 3.939 21 F -0.219 7.219 22 C -0.120 4.120 23 C -0.126 4.126 24 C -0.132 4.132 25 C -0.111 4.111 26 H 0.256 0.744 27 H 0.387 0.613 28 H 0.057 0.943 29 H 0.085 0.915 30 H 0.400 0.600 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.064 0.936 39 H 0.090 0.910 40 H 0.057 0.943 41 H 0.079 0.921 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.639 -16.701 3.533 19.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.207 4.207 3 Si 0.737 3.263 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.376 4.376 8 H 0.088 0.912 9 N -0.348 5.348 10 C 0.079 3.921 11 H 0.092 0.908 12 C -0.217 4.217 13 C 0.023 3.977 14 H 0.112 0.888 15 N -0.353 5.353 16 C 0.298 3.702 17 O -0.421 6.421 18 C -0.180 4.180 19 C -0.177 4.177 20 C 0.006 3.994 21 F -0.200 7.200 22 C -0.123 4.123 23 C -0.163 4.163 24 C -0.169 4.169 25 C -0.149 4.149 26 H 0.066 0.934 27 H 0.223 0.777 28 H 0.076 0.924 29 H 0.104 0.896 30 H 0.234 0.766 31 H 0.115 0.885 32 H 0.114 0.886 33 H 0.100 0.900 34 H 0.101 0.899 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.083 0.917 39 H 0.108 0.892 40 H 0.076 0.924 41 H 0.098 0.902 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 8.263 -16.854 2.885 18.991 hybrid contribution 0.419 1.158 0.250 1.256 sum 8.681 -15.696 3.135 18.209 Atomic orbital electron populations 1.69654 1.05111 1.25787 1.57336 1.24742 0.95498 0.97718 1.02737 0.86207 0.78645 0.83860 0.77548 1.21697 1.21779 1.20775 1.19266 0.91024 0.84186 1.43088 0.91196 1.42398 1.05922 0.99558 1.86893 1.21330 0.94016 0.84522 0.92185 0.90832 1.24265 1.01778 0.95309 1.00311 1.21715 0.85454 0.93411 0.97101 0.88823 1.45633 1.24478 1.28127 1.37065 1.20512 0.87110 0.80337 0.82193 1.90710 1.56795 1.64579 1.30007 1.21549 0.96592 0.98176 1.01676 1.21902 0.97459 0.97004 1.01290 1.22014 0.98585 0.85157 0.93597 1.92772 1.96183 1.55575 1.75500 1.23588 0.97394 0.98071 0.93221 1.22642 0.98544 0.99149 0.95985 1.22746 0.96581 1.01463 0.96110 1.22461 0.93743 1.01786 0.96866 0.93418 0.77687 0.92382 0.89627 0.76562 0.88480 0.88591 0.89973 0.89904 0.90692 0.90759 0.90957 0.91726 0.89192 0.92448 0.90249 0.90749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.30 13.06 55.49 0.72 -26.57 16 2 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 3 Si 0.91 21.84 29.55 -169.99 -5.02 16.81 16 4 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.24 -6.52 9.98 -15.06 -0.15 -6.67 16 8 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 9 N -0.71 -16.78 5.36 -52.84 -0.28 -17.07 16 10 C 0.19 3.56 4.28 -67.33 -0.29 3.27 16 11 H 0.07 1.34 8.12 -51.93 -0.42 0.92 16 12 C -0.17 -3.05 7.68 -25.74 -0.20 -3.25 16 13 C 0.13 1.92 4.09 -67.48 -0.28 1.64 16 14 H 0.09 1.53 7.51 -51.93 -0.39 1.14 16 15 N -0.70 -8.45 5.06 -53.37 -0.27 -8.72 16 16 C 0.51 6.31 7.83 -10.99 -0.09 6.23 16 17 O -0.54 -9.04 15.60 5.55 0.09 -8.96 16 18 C -0.14 -1.06 5.70 -27.88 -0.16 -1.22 16 19 C -0.14 -1.19 4.96 -26.73 -0.13 -1.32 16 20 C 0.06 0.42 7.55 37.16 0.28 0.70 16 21 F -0.22 -2.25 17.36 2.25 0.04 -2.21 16 22 C -0.12 -1.85 0.92 -154.55 -0.14 -1.99 16 23 C -0.13 -1.69 7.46 -26.28 -0.20 -1.88 16 24 C -0.13 -1.96 8.08 -25.75 -0.21 -2.17 16 25 C -0.11 -1.73 7.46 -26.28 -0.20 -1.93 16 26 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 27 H 0.39 9.74 5.88 -40.82 -0.24 9.50 16 28 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.09 1.63 8.14 -51.93 -0.42 1.20 16 30 H 0.40 3.90 8.58 -40.82 -0.35 3.55 16 31 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.08 0.81 8.10 -51.93 -0.42 0.39 16 34 H 0.08 0.84 8.10 -51.93 -0.42 0.42 16 35 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 40 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.08 1.44 6.43 -51.93 -0.33 1.10 16 42 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 347.23 15.07 5.23 5.23 Total: -1.00 -31.59 347.23 -8.11 -39.70 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: -6.77 Total: 10.76 kcal Atomic # 6 Polarization: -7.13 SS G_CDS: -1.85 Total: -8.98 kcal Atomic # 7 Polarization: -52.53 SS G_CDS: 0.17 Total: -52.36 kcal Atomic # 8 Polarization: -9.04 SS G_CDS: 0.09 Total: -8.96 kcal Atomic # 9 Polarization: -2.25 SS G_CDS: 0.04 Total: -2.21 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.59 -8.11 -39.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203274024.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.431 kcal (2) G-P(sol) polarization free energy of solvation -31.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds