Wall clock time and date at job start Tue Mar 31 2020 06:33:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 119.99875 * 2 1 4 4 H 1.48504 * 109.47225 * 270.00042 * 3 2 1 5 5 H 1.48504 * 109.47365 * 29.99829 * 3 2 1 6 6 H 1.48497 * 109.47167 * 150.00008 * 3 2 1 7 7 C 1.38807 * 120.00255 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99955 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99733 * 359.97438 * 7 2 1 10 10 C 1.46505 * 120.00009 * 180.02562 * 9 7 2 11 11 H 1.08999 * 112.88270 * 26.84194 * 10 9 7 12 12 C 1.53949 * 113.66050 * 255.50109 * 10 9 7 13 13 C 1.53959 * 87.29253 * 220.69707 * 12 10 9 14 14 H 1.08999 * 113.65866 * 139.29879 * 13 12 10 15 15 N 1.46499 * 113.66417 * 270.26389 * 13 12 10 16 16 C 1.34777 * 119.99665 * 254.26436 * 15 13 12 17 17 O 1.21283 * 119.99990 * 359.71991 * 16 15 13 18 18 C 1.50698 * 119.99538 * 179.72653 * 16 15 13 19 19 C 1.52999 * 109.47004 * 179.97438 * 18 16 15 20 20 C 1.52998 * 109.47303 * 179.97438 * 19 18 16 21 21 F 1.39904 * 109.47146 * 179.97438 * 20 19 18 22 22 C 1.52904 * 86.88083 * 24.78215 * 13 12 10 23 23 C 1.52917 * 121.14254 * 209.33201 * 22 13 12 24 24 C 1.53953 * 86.78182 * 209.37779 * 23 22 13 25 25 C 1.52914 * 121.14136 * 100.76754 * 22 13 12 26 26 H 0.97005 * 119.99863 * 0.02562 * 1 2 3 27 27 H 0.97001 * 120.00528 * 0.02562 * 9 7 2 28 28 H 1.08998 * 113.58020 * 106.09966 * 12 10 9 29 29 H 1.08996 * 113.65411 * 335.31137 * 12 10 9 30 30 H 0.97001 * 119.99790 * 73.98149 * 15 13 12 31 31 H 1.09003 * 109.47112 * 299.99065 * 18 16 15 32 32 H 1.08993 * 109.47916 * 59.99687 * 18 16 15 33 33 H 1.09000 * 109.47527 * 299.99994 * 19 18 16 34 34 H 1.09007 * 109.47302 * 59.99534 * 19 18 16 35 35 H 1.08995 * 109.47540 * 300.00020 * 20 19 18 36 36 H 1.09001 * 109.46719 * 60.00219 * 20 19 18 37 37 H 1.08999 * 113.65566 * 323.85560 * 23 22 13 38 38 H 1.09001 * 113.66201 * 94.90287 * 23 22 13 39 39 H 1.08993 * 113.57707 * 270.12684 * 24 23 22 40 40 H 1.09003 * 113.57569 * 139.34193 * 24 23 22 41 41 H 1.08997 * 113.66464 * 265.09738 * 25 22 13 42 42 H 1.09001 * 113.65683 * 36.15485 * 25 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 1 3.0460 -3.5758 0.4529 12 6 2.0613 -4.3683 -1.3657 13 6 1.8558 -5.6864 -0.5971 14 1 1.1490 -6.3653 -1.0742 15 7 3.1071 -6.3444 -0.2130 16 6 3.5184 -7.4465 -0.8707 17 8 2.8500 -7.8966 -1.7772 18 6 4.8087 -8.1197 -0.4796 19 6 5.0403 -9.3380 -1.3757 20 6 6.3506 -10.0211 -0.9791 21 9 6.5621 -11.1355 -1.7982 22 6 1.2385 -4.8425 0.5185 23 6 1.3197 -5.2831 1.9806 24 6 -0.0098 -4.5354 2.1893 25 6 -0.2779 -4.7424 0.6876 26 1 -0.4850 0.8401 -0.0004 27 1 0.3556 -2.3881 -0.0005 28 1 3.0179 -4.3111 -1.8850 29 1 1.2182 -4.0983 -2.0015 30 1 3.6416 -5.9843 0.5119 31 1 5.6348 -7.4186 -0.5984 32 1 4.7507 -8.4401 0.5606 33 1 4.2141 -10.0390 -1.2567 34 1 5.0981 -9.0180 -2.4162 35 1 7.1766 -9.3201 -1.0985 36 1 6.2930 -10.3411 0.0613 37 1 1.2413 -6.3617 2.1173 38 1 2.1576 -4.8457 2.5235 39 1 0.1175 -3.4898 2.4695 40 1 -0.7110 -5.0646 2.8346 41 1 -0.7163 -3.8730 0.1976 42 1 -0.8054 -5.6690 0.4611 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001203274024.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:58 Heat of formation + Delta-G solvation = -68.435663 kcal Electronic energy + Delta-G solvation = -22580.355524 eV Core-core repulsion = 19088.948937 eV Total energy + Delta-G solvation = -3491.406586 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.164 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -48.51476 -41.90319 -40.18000 -36.37944 -35.77043 -34.92304 -33.72751 -31.72067 -28.32918 -26.69058 -26.38826 -25.49733 -23.98711 -22.97915 -21.73660 -21.10911 -19.60674 -18.80319 -18.06724 -17.41912 -17.20473 -16.74253 -16.54232 -16.36372 -16.11398 -15.83173 -15.47475 -15.33954 -14.73182 -14.40333 -14.12526 -13.81589 -13.42720 -13.30942 -13.16582 -12.87182 -12.85347 -12.77156 -12.46426 -12.35546 -12.15555 -11.96651 -11.91247 -11.85489 -11.50411 -11.29024 -11.19835 -10.88821 -10.81067 -10.67442 -9.88535 -8.95280 -7.93332 -5.20886 1.47872 1.49094 1.57095 1.68584 2.16472 2.56966 3.37938 3.49363 3.57955 3.73698 3.78997 3.80129 3.91842 3.95464 4.02312 4.14131 4.20893 4.27498 4.34620 4.48090 4.59117 4.64622 4.71566 4.75571 4.81854 4.88098 4.91904 5.03329 5.05533 5.09876 5.13739 5.19709 5.27663 5.33427 5.50268 5.60004 5.64319 5.71513 6.28829 6.64645 7.33373 7.35828 8.13356 8.36058 9.29972 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.022401 B = 0.003420 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.620036 B = 8185.823669 C = 8919.127095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.075 4.075 3 Si 0.969 3.031 4 H -0.292 1.292 5 H -0.298 1.298 6 H -0.266 1.266 7 C -0.240 4.240 8 H 0.078 0.922 9 N -0.722 5.722 10 C 0.180 3.820 11 H 0.084 0.916 12 C -0.175 4.175 13 C 0.149 3.851 14 H 0.082 0.918 15 N -0.694 5.694 16 C 0.508 3.492 17 O -0.593 6.593 18 C -0.128 4.128 19 C -0.137 4.137 20 C 0.060 3.940 21 F -0.242 7.242 22 C -0.112 4.112 23 C -0.106 4.106 24 C -0.132 4.132 25 C -0.116 4.116 26 H 0.250 0.750 27 H 0.376 0.624 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.416 0.584 31 H 0.125 0.875 32 H 0.132 0.868 33 H 0.063 0.937 34 H 0.058 0.942 35 H 0.098 0.902 36 H 0.102 0.898 37 H 0.099 0.901 38 H 0.073 0.927 39 H 0.057 0.943 40 H 0.080 0.920 41 H 0.045 0.955 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.004 -18.173 5.293 21.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.267 4.267 3 Si 0.799 3.201 4 H -0.219 1.219 5 H -0.225 1.225 6 H -0.191 1.191 7 C -0.372 4.372 8 H 0.096 0.904 9 N -0.360 5.360 10 C 0.070 3.930 11 H 0.102 0.898 12 C -0.217 4.217 13 C 0.042 3.958 14 H 0.100 0.900 15 N -0.344 5.344 16 C 0.297 3.703 17 O -0.473 6.473 18 C -0.167 4.167 19 C -0.176 4.176 20 C 0.005 3.995 21 F -0.223 7.223 22 C -0.114 4.114 23 C -0.143 4.143 24 C -0.169 4.169 25 C -0.154 4.154 26 H 0.058 0.942 27 H 0.210 0.790 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.253 0.747 31 H 0.143 0.857 32 H 0.150 0.850 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.116 0.884 36 H 0.120 0.880 37 H 0.118 0.882 38 H 0.092 0.908 39 H 0.075 0.925 40 H 0.098 0.902 41 H 0.064 0.936 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 10.697 -18.363 4.671 21.759 hybrid contribution -0.318 1.550 -0.351 1.621 sum 10.379 -16.813 4.321 20.225 Atomic orbital electron populations 1.69815 1.06613 1.25919 1.59678 1.25510 0.96272 1.00957 1.03948 0.85200 0.77890 0.79846 0.77189 1.21928 1.22515 1.19109 1.19685 0.91542 0.85308 1.40683 0.90425 1.42570 1.05638 1.00670 1.87141 1.21629 0.94659 0.83507 0.93248 0.89847 1.24131 1.00792 0.97225 0.99549 1.21319 0.86608 0.92015 0.95878 0.89989 1.45528 1.23502 1.27958 1.37435 1.21410 0.88083 0.79772 0.81056 1.90702 1.58588 1.65828 1.32183 1.21578 0.94325 0.97673 1.03124 1.21849 0.98073 0.97293 1.00355 1.22224 0.98074 0.84743 0.94441 1.92729 1.96236 1.56913 1.76413 1.23349 0.96818 0.96127 0.95107 1.22605 0.97709 1.00502 0.93508 1.22662 0.98432 1.00129 0.95676 1.22526 0.94046 1.01366 0.97434 0.94156 0.78984 0.92455 0.91986 0.74738 0.85663 0.84983 0.91840 0.92341 0.88406 0.88018 0.88225 0.90794 0.92468 0.90163 0.93599 0.88648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.63 13.06 21.65 0.28 -58.35 16 2 C -0.07 -4.20 5.50 84.86 0.47 -3.73 16 3 Si 0.97 45.35 29.55 68.60 2.03 47.37 16 4 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 5 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 6 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 7 C -0.24 -12.88 9.98 84.03 0.84 -12.05 16 8 H 0.08 3.95 7.83 -2.91 -0.02 3.93 16 9 N -0.72 -34.85 5.36 -321.10 -1.72 -36.57 16 10 C 0.18 6.58 4.28 45.38 0.19 6.77 16 11 H 0.08 2.88 8.12 -2.39 -0.02 2.86 16 12 C -0.17 -6.13 7.68 31.24 0.24 -5.89 16 13 C 0.15 4.25 4.09 45.28 0.19 4.43 16 14 H 0.08 2.62 7.51 -2.39 -0.02 2.60 16 15 N -0.69 -14.72 5.06 -441.15 -2.23 -16.95 16 16 C 0.51 11.32 7.83 87.66 0.69 12.00 16 17 O -0.59 -19.35 15.60 -3.04 -0.05 -19.40 16 18 C -0.13 -1.45 5.70 29.85 0.17 -1.28 16 19 C -0.14 -2.08 4.96 30.59 0.15 -1.93 16 20 C 0.06 0.63 7.55 71.98 0.54 1.17 16 21 F -0.24 -4.59 17.36 44.97 0.78 -3.81 16 22 C -0.11 -3.29 0.92 -52.21 -0.05 -3.34 16 23 C -0.11 -2.51 7.46 30.89 0.23 -2.28 16 24 C -0.13 -3.75 8.08 31.23 0.25 -3.50 16 25 C -0.12 -3.59 7.46 30.88 0.23 -3.36 16 26 H 0.25 14.73 8.31 -92.70 -0.77 13.96 16 27 H 0.38 19.73 5.88 -92.71 -0.55 19.18 16 28 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 30 H 0.42 6.40 8.58 -92.71 -0.80 5.61 16 31 H 0.13 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.13 0.64 8.14 -2.39 -0.02 0.63 16 33 H 0.06 1.19 8.10 -2.39 -0.02 1.17 16 34 H 0.06 1.16 8.10 -2.38 -0.02 1.14 16 35 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 37 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 40 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 41 H 0.05 1.74 6.43 -2.39 -0.02 1.72 16 42 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 Total: -1.00 -71.81 347.23 2.91 -68.90 By element: Atomic # 1 Polarization: 32.10 SS G_CDS: -0.32 Total: 31.78 kcal Atomic # 6 Polarization: -17.11 SS G_CDS: 4.14 Total: -12.97 kcal Atomic # 7 Polarization: -108.20 SS G_CDS: -3.67 Total: -111.87 kcal Atomic # 8 Polarization: -19.35 SS G_CDS: -0.05 Total: -19.40 kcal Atomic # 9 Polarization: -4.59 SS G_CDS: 0.78 Total: -3.81 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.37 kcal Total: -71.81 2.91 -68.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203274024.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.461 kcal (2) G-P(sol) polarization free energy of solvation -71.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds