Wall clock time and date at job start Tue Mar 31 2020 06:34:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86793 * 119.99862 * 2 1 4 4 H 1.48500 * 109.47094 * 269.99802 * 3 2 1 5 5 H 1.48494 * 109.47351 * 30.00357 * 3 2 1 6 6 H 1.48502 * 109.46804 * 149.99952 * 3 2 1 7 7 C 1.38814 * 119.99849 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99911 * 0.02562 * 7 2 1 9 9 N 1.36930 * 119.99954 * 179.97438 * 7 2 1 10 10 C 1.46500 * 120.00101 * 180.02562 * 9 7 2 11 11 H 1.08997 * 112.95174 * 26.90254 * 10 9 7 12 12 C 1.53957 * 113.66452 * 255.49811 * 10 9 7 13 13 C 1.53945 * 87.29527 * 270.26429 * 12 10 9 14 14 H 1.08994 * 113.66328 * 220.79509 * 13 12 10 15 15 N 1.46496 * 113.66561 * 89.82756 * 13 12 10 16 16 C 1.34771 * 119.99960 * 104.50930 * 15 13 12 17 17 O 1.21281 * 120.00381 * 359.97438 * 16 15 13 18 18 C 1.50707 * 120.00140 * 180.02562 * 16 15 13 19 19 C 1.52996 * 109.47263 * 179.97438 * 18 16 15 20 20 C 1.52997 * 109.47177 * 179.97438 * 19 18 16 21 21 F 1.39901 * 109.47192 * 179.97438 * 20 19 18 22 22 C 1.52906 * 113.66637 * 158.31246 * 10 9 7 23 23 C 1.52911 * 121.13708 * 323.85381 * 22 10 9 24 24 C 1.53953 * 86.78498 * 209.37459 * 23 22 10 25 25 C 1.52908 * 121.14322 * 215.29266 * 22 10 9 26 26 H 0.97001 * 120.00208 * 359.97438 * 1 2 3 27 27 H 0.96999 * 119.99979 * 0.02562 * 9 7 2 28 28 H 1.09004 * 113.57788 * 24.86558 * 12 10 9 29 29 H 1.08997 * 113.58156 * 155.58012 * 12 10 9 30 30 H 0.97002 * 120.00399 * 284.50312 * 15 13 12 31 31 H 1.08999 * 109.46872 * 299.99621 * 18 16 15 32 32 H 1.09001 * 109.47078 * 59.99424 * 18 16 15 33 33 H 1.09005 * 109.46852 * 299.99465 * 19 18 16 34 34 H 1.09001 * 109.47283 * 59.99868 * 19 18 16 35 35 H 1.08999 * 109.47040 * 299.99990 * 20 19 18 36 36 H 1.09004 * 109.47495 * 59.99853 * 20 19 18 37 37 H 1.09001 * 113.66341 * 323.84544 * 23 22 10 38 38 H 1.08996 * 113.66624 * 94.90194 * 23 22 10 39 39 H 1.09002 * 113.58246 * 270.13531 * 24 23 22 40 40 H 1.08997 * 113.65416 * 139.34277 * 24 23 22 41 41 H 1.09003 * 113.66175 * 265.09643 * 25 22 10 42 42 H 1.09004 * 113.66268 * 36.05302 * 25 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0014 9 7 3.3795 -1.2022 -0.0011 10 6 4.1120 -2.4709 -0.0022 11 1 3.5492 -3.2863 -0.4567 12 6 4.7273 -2.8305 1.3625 13 6 5.9848 -2.0629 0.9158 14 1 6.9180 -2.5522 1.1945 15 7 5.9607 -0.6405 1.2655 16 6 6.7069 -0.1862 2.2917 17 8 7.3981 -0.9549 2.9260 18 6 6.6817 1.2770 2.6519 19 6 7.6089 1.5250 3.8434 20 6 7.5838 3.0105 4.2087 21 9 8.4311 3.2372 5.2985 22 6 5.5457 -2.3515 -0.5202 23 6 5.8971 -1.3963 -1.6615 24 6 7.0236 -2.3813 -2.0233 25 6 6.1891 -3.4755 -1.3330 26 1 -0.4850 0.8400 0.0004 27 1 3.8645 -0.3622 -0.0007 28 1 4.2134 -2.3714 2.2071 29 1 4.8926 -3.8992 1.4983 30 1 5.4077 -0.0256 0.7585 31 1 7.0191 1.8668 1.7996 32 1 5.6652 1.5687 2.9160 33 1 7.2710 0.9352 4.6956 34 1 8.6255 1.2332 3.5797 35 1 7.9218 3.6000 3.3564 36 1 6.5673 3.3028 4.4723 37 1 5.1210 -1.3204 -2.4231 38 1 6.2573 -0.4247 -1.3236 39 1 7.9667 -2.1693 -1.5196 40 1 7.1422 -2.5351 -3.0959 41 1 6.7827 -4.1650 -0.7326 42 1 5.4947 -3.9850 -2.0011 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001203274028.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:02 Heat of formation + Delta-G solvation = -40.590397 kcal Electronic energy + Delta-G solvation = -23282.736091 eV Core-core repulsion = 19792.536966 eV Total energy + Delta-G solvation = -3490.199125 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.164 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -47.75202 -40.84541 -39.02858 -35.50920 -34.11547 -33.78909 -32.36795 -30.49791 -27.58731 -25.65001 -24.70795 -24.20948 -22.87001 -21.84902 -20.30059 -20.18178 -18.65633 -17.43882 -16.96361 -16.67136 -16.03762 -15.64987 -15.37065 -15.14693 -15.00125 -14.74010 -14.41952 -13.98958 -13.37373 -13.32235 -12.88133 -12.62252 -12.28262 -12.11803 -12.08271 -11.95635 -11.65377 -11.56038 -11.22396 -11.15502 -11.07664 -10.84309 -10.82327 -10.41224 -10.19916 -9.93025 -9.82382 -9.66531 -9.50638 -8.98005 -8.71610 -7.40505 -5.89689 -3.26277 2.71760 3.09615 3.19930 3.23132 3.31220 4.38122 4.43757 4.54354 4.57068 4.57800 4.76327 4.83193 4.84865 4.97275 5.06193 5.07237 5.18916 5.28919 5.38841 5.46022 5.51997 5.54951 5.72633 5.79551 5.80881 5.85347 5.95487 5.99779 6.04291 6.10283 6.12630 6.22650 6.47004 6.55112 6.57977 6.77553 6.90767 7.65235 7.87201 8.29445 8.33548 9.05423 9.77321 9.95958 11.28510 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.011487 B = 0.006236 C = 0.004546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2436.900460 B = 4488.667648 C = 6158.254061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.007 3.993 3 Si 0.883 3.117 4 H -0.282 1.282 5 H -0.289 1.289 6 H -0.283 1.283 7 C -0.245 4.245 8 H 0.094 0.906 9 N -0.724 5.724 10 C 0.185 3.815 11 H 0.073 0.927 12 C -0.183 4.183 13 C 0.149 3.851 14 H 0.093 0.907 15 N -0.703 5.703 16 C 0.517 3.483 17 O -0.546 6.546 18 C -0.145 4.145 19 C -0.135 4.135 20 C 0.060 3.940 21 F -0.219 7.219 22 C -0.134 4.134 23 C -0.122 4.122 24 C -0.140 4.140 25 C -0.102 4.102 26 H 0.261 0.739 27 H 0.355 0.645 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.401 0.599 31 H 0.095 0.905 32 H 0.099 0.901 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.089 0.911 38 H 0.059 0.941 39 H 0.074 0.926 40 H 0.064 0.936 41 H 0.067 0.933 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.257 1.157 0.325 15.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.189 4.189 3 Si 0.713 3.287 4 H -0.209 1.209 5 H -0.215 1.215 6 H -0.210 1.210 7 C -0.374 4.374 8 H 0.111 0.889 9 N -0.365 5.365 10 C 0.074 3.926 11 H 0.091 0.909 12 C -0.225 4.225 13 C 0.044 3.956 14 H 0.111 0.889 15 N -0.354 5.354 16 C 0.303 3.697 17 O -0.424 6.424 18 C -0.185 4.185 19 C -0.174 4.174 20 C 0.005 3.995 21 F -0.201 7.201 22 C -0.136 4.136 23 C -0.160 4.160 24 C -0.177 4.177 25 C -0.141 4.141 26 H 0.071 0.929 27 H 0.189 0.811 28 H 0.092 0.908 29 H 0.099 0.901 30 H 0.238 0.762 31 H 0.114 0.886 32 H 0.117 0.883 33 H 0.101 0.899 34 H 0.100 0.900 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.108 0.892 38 H 0.077 0.923 39 H 0.093 0.907 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 15.468 0.588 0.790 15.500 hybrid contribution 0.172 1.605 -0.149 1.621 sum 15.640 2.193 0.641 15.806 Atomic orbital electron populations 1.69682 1.05021 1.25875 1.57061 1.24674 0.95228 0.97046 1.01994 0.86618 0.78789 0.85458 0.77788 1.20856 1.21473 1.21005 1.19102 0.80179 0.94925 1.43243 0.88853 1.42434 1.03844 1.01204 1.88997 1.20987 0.89165 0.89782 0.92673 0.90877 1.24241 0.97034 0.99343 1.01905 1.21468 0.99174 0.81176 0.93792 0.88923 1.45795 1.46326 1.09686 1.33643 1.20470 0.79041 0.90384 0.79768 1.90678 1.41847 1.58361 1.51500 1.21591 1.02708 0.94192 0.99980 1.21879 1.01434 0.95308 0.98731 1.22025 0.93602 0.97224 0.86623 1.92763 1.73800 1.95830 1.57663 1.23442 0.98847 0.98425 0.92865 1.22577 0.98183 0.96946 0.98245 1.22839 0.97526 0.97237 1.00114 1.22482 0.98355 0.95281 0.97937 0.92905 0.81121 0.90809 0.90082 0.76234 0.88627 0.88260 0.89854 0.90017 0.90722 0.90567 0.89240 0.92271 0.90722 0.91719 0.91452 0.89362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.94 13.97 55.49 0.78 -27.16 16 2 C 0.01 0.18 5.50 -17.43 -0.10 0.09 16 3 Si 0.88 20.33 27.73 -169.99 -4.71 15.61 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -5.75 6.40 56.52 0.36 -5.39 16 7 C -0.24 -6.48 10.46 -15.06 -0.16 -6.63 16 8 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 9 N -0.72 -15.59 4.78 -52.99 -0.25 -15.85 16 10 C 0.19 3.33 4.35 -67.48 -0.29 3.04 16 11 H 0.07 1.35 8.12 -51.93 -0.42 0.93 16 12 C -0.18 -3.08 7.68 -25.75 -0.20 -3.28 16 13 C 0.15 2.31 4.07 -67.48 -0.27 2.04 16 14 H 0.09 1.46 7.54 -51.93 -0.39 1.06 16 15 N -0.70 -10.87 4.72 -53.37 -0.25 -11.12 16 16 C 0.52 7.85 7.83 -10.98 -0.09 7.76 16 17 O -0.55 -9.85 15.62 5.56 0.09 -9.76 16 18 C -0.14 -1.64 5.70 -27.88 -0.16 -1.80 16 19 C -0.14 -1.49 4.96 -26.73 -0.13 -1.62 16 20 C 0.06 0.56 7.55 37.16 0.28 0.84 16 21 F -0.22 -2.64 17.36 2.25 0.04 -2.60 16 22 C -0.13 -1.94 0.77 -154.71 -0.12 -2.06 16 23 C -0.12 -1.68 7.18 -26.28 -0.19 -1.87 16 24 C -0.14 -1.61 8.08 -25.75 -0.21 -1.82 16 25 C -0.10 -1.23 7.84 -26.28 -0.21 -1.44 16 26 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 27 H 0.35 7.32 3.25 -40.82 -0.13 7.19 16 28 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 29 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.40 6.30 5.82 -40.82 -0.24 6.06 16 31 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.08 1.03 8.10 -51.93 -0.42 0.60 16 34 H 0.08 0.94 8.10 -51.93 -0.42 0.52 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 38 H 0.06 0.80 7.51 -51.93 -0.39 0.41 16 39 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 341.15 15.07 5.14 5.14 Total: -1.00 -30.86 341.15 -7.68 -38.54 By element: Atomic # 1 Polarization: 20.62 SS G_CDS: -6.66 Total: 13.96 kcal Atomic # 6 Polarization: -4.92 SS G_CDS: -1.84 Total: -6.76 kcal Atomic # 7 Polarization: -54.40 SS G_CDS: 0.27 Total: -54.13 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.09 Total: -9.76 kcal Atomic # 9 Polarization: -2.64 SS G_CDS: 0.04 Total: -2.60 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -4.71 Total: 15.61 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.86 -7.68 -38.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203274028.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.053 kcal (2) G-P(sol) polarization free energy of solvation -30.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds