Wall clock time and date at job start Tue Mar 31 2020 06:34:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86793 * 119.99862 * 2 1 4 4 H 1.48500 * 109.47094 * 269.99802 * 3 2 1 5 5 H 1.48494 * 109.47351 * 30.00357 * 3 2 1 6 6 H 1.48502 * 109.46804 * 149.99952 * 3 2 1 7 7 C 1.38814 * 119.99849 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99911 * 0.02562 * 7 2 1 9 9 N 1.36930 * 119.99954 * 179.97438 * 7 2 1 10 10 C 1.46500 * 120.00101 * 180.02562 * 9 7 2 11 11 H 1.08997 * 112.95174 * 26.90254 * 10 9 7 12 12 C 1.53957 * 113.66452 * 255.49811 * 10 9 7 13 13 C 1.53945 * 87.29527 * 270.26429 * 12 10 9 14 14 H 1.08994 * 113.66328 * 220.79509 * 13 12 10 15 15 N 1.46496 * 113.66561 * 89.82756 * 13 12 10 16 16 C 1.34771 * 119.99960 * 104.50930 * 15 13 12 17 17 O 1.21281 * 120.00381 * 359.97438 * 16 15 13 18 18 C 1.50707 * 120.00140 * 180.02562 * 16 15 13 19 19 C 1.52996 * 109.47263 * 179.97438 * 18 16 15 20 20 C 1.52997 * 109.47177 * 179.97438 * 19 18 16 21 21 F 1.39901 * 109.47192 * 179.97438 * 20 19 18 22 22 C 1.52906 * 113.66637 * 158.31246 * 10 9 7 23 23 C 1.52911 * 121.13708 * 323.85381 * 22 10 9 24 24 C 1.53953 * 86.78498 * 209.37459 * 23 22 10 25 25 C 1.52908 * 121.14322 * 215.29266 * 22 10 9 26 26 H 0.97001 * 120.00208 * 359.97438 * 1 2 3 27 27 H 0.96999 * 119.99979 * 0.02562 * 9 7 2 28 28 H 1.09004 * 113.57788 * 24.86558 * 12 10 9 29 29 H 1.08997 * 113.58156 * 155.58012 * 12 10 9 30 30 H 0.97002 * 120.00399 * 284.50312 * 15 13 12 31 31 H 1.08999 * 109.46872 * 299.99621 * 18 16 15 32 32 H 1.09001 * 109.47078 * 59.99424 * 18 16 15 33 33 H 1.09005 * 109.46852 * 299.99465 * 19 18 16 34 34 H 1.09001 * 109.47283 * 59.99868 * 19 18 16 35 35 H 1.08999 * 109.47040 * 299.99990 * 20 19 18 36 36 H 1.09004 * 109.47495 * 59.99853 * 20 19 18 37 37 H 1.09001 * 113.66341 * 323.84544 * 23 22 10 38 38 H 1.08996 * 113.66624 * 94.90194 * 23 22 10 39 39 H 1.09002 * 113.58246 * 270.13531 * 24 23 22 40 40 H 1.08997 * 113.65416 * 139.34277 * 24 23 22 41 41 H 1.09003 * 113.66175 * 265.09643 * 25 22 10 42 42 H 1.09004 * 113.66268 * 36.05302 * 25 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0014 9 7 3.3795 -1.2022 -0.0011 10 6 4.1120 -2.4709 -0.0022 11 1 3.5492 -3.2863 -0.4567 12 6 4.7273 -2.8305 1.3625 13 6 5.9848 -2.0629 0.9158 14 1 6.9180 -2.5522 1.1945 15 7 5.9607 -0.6405 1.2655 16 6 6.7069 -0.1862 2.2917 17 8 7.3981 -0.9549 2.9260 18 6 6.6817 1.2770 2.6519 19 6 7.6089 1.5250 3.8434 20 6 7.5838 3.0105 4.2087 21 9 8.4311 3.2372 5.2985 22 6 5.5457 -2.3515 -0.5202 23 6 5.8971 -1.3963 -1.6615 24 6 7.0236 -2.3813 -2.0233 25 6 6.1891 -3.4755 -1.3330 26 1 -0.4850 0.8400 0.0004 27 1 3.8645 -0.3622 -0.0007 28 1 4.2134 -2.3714 2.2071 29 1 4.8926 -3.8992 1.4983 30 1 5.4077 -0.0256 0.7585 31 1 7.0191 1.8668 1.7996 32 1 5.6652 1.5687 2.9160 33 1 7.2710 0.9352 4.6956 34 1 8.6255 1.2332 3.5797 35 1 7.9218 3.6000 3.3564 36 1 6.5673 3.3028 4.4723 37 1 5.1210 -1.3204 -2.4231 38 1 6.2573 -0.4247 -1.3236 39 1 7.9667 -2.1693 -1.5196 40 1 7.1422 -2.5351 -3.0959 41 1 6.7827 -4.1650 -0.7326 42 1 5.4947 -3.9850 -2.0011 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001203274028.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:01 Heat of formation + Delta-G solvation = -59.834190 kcal Electronic energy + Delta-G solvation = -23283.570564 eV Core-core repulsion = 19792.536966 eV Total energy + Delta-G solvation = -3491.033598 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.164 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -48.57350 -42.08469 -40.21259 -36.81433 -35.44253 -35.00644 -33.90114 -32.32117 -28.52159 -26.85860 -26.12567 -25.39398 -24.31932 -22.89736 -21.55152 -21.41749 -20.19152 -19.00175 -18.10277 -17.48582 -17.09312 -16.73025 -16.59237 -16.53346 -16.13706 -15.96505 -15.53099 -15.46113 -14.81813 -14.42466 -14.39370 -14.01566 -13.75792 -13.34993 -13.18442 -12.98557 -12.96488 -12.77367 -12.54585 -12.46775 -12.08228 -12.04598 -12.00621 -11.83743 -11.57892 -11.36424 -11.19151 -10.94284 -10.83771 -10.72888 -9.97723 -9.29083 -8.01550 -5.36438 1.29057 1.41991 1.48227 1.55960 2.05301 2.48467 3.24603 3.29261 3.43261 3.60101 3.69799 3.74946 3.84331 3.90785 3.96759 4.02782 4.13167 4.18867 4.24716 4.35420 4.53186 4.59778 4.61876 4.74364 4.75218 4.85117 4.94417 4.95796 4.98398 5.05287 5.12173 5.15481 5.17418 5.23080 5.49674 5.58567 5.60563 5.79696 6.21945 6.45945 7.06277 7.15971 7.80997 8.00754 9.19825 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.011487 B = 0.006236 C = 0.004546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2436.900460 B = 4488.667648 C = 6158.254061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.065 4.065 3 Si 0.950 3.050 4 H -0.275 1.275 5 H -0.297 1.297 6 H -0.240 1.240 7 C -0.232 4.232 8 H 0.054 0.946 9 N -0.722 5.722 10 C 0.167 3.833 11 H 0.060 0.940 12 C -0.180 4.180 13 C 0.155 3.845 14 H 0.096 0.904 15 N -0.704 5.704 16 C 0.512 3.488 17 O -0.580 6.580 18 C -0.140 4.140 19 C -0.131 4.131 20 C 0.059 3.941 21 F -0.237 7.237 22 C -0.122 4.122 23 C -0.128 4.128 24 C -0.125 4.125 25 C -0.098 4.098 26 H 0.257 0.743 27 H 0.363 0.637 28 H 0.045 0.955 29 H 0.100 0.900 30 H 0.401 0.599 31 H 0.129 0.871 32 H 0.110 0.890 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.102 0.898 36 H 0.092 0.908 37 H 0.078 0.922 38 H 0.064 0.936 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.011 2.452 -0.423 18.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.634 5.634 2 C -0.256 4.256 3 Si 0.776 3.224 4 H -0.201 1.201 5 H -0.224 1.224 6 H -0.164 1.164 7 C -0.363 4.363 8 H 0.072 0.928 9 N -0.365 5.365 10 C 0.057 3.943 11 H 0.079 0.921 12 C -0.222 4.222 13 C 0.049 3.951 14 H 0.114 0.886 15 N -0.356 5.356 16 C 0.300 3.700 17 O -0.460 6.460 18 C -0.180 4.180 19 C -0.169 4.169 20 C 0.005 3.995 21 F -0.218 7.218 22 C -0.124 4.124 23 C -0.166 4.166 24 C -0.162 4.162 25 C -0.136 4.136 26 H 0.066 0.934 27 H 0.198 0.802 28 H 0.064 0.936 29 H 0.118 0.882 30 H 0.238 0.762 31 H 0.147 0.853 32 H 0.128 0.872 33 H 0.080 0.920 34 H 0.091 0.909 35 H 0.120 0.880 36 H 0.110 0.890 37 H 0.096 0.904 38 H 0.083 0.917 39 H 0.101 0.899 40 H 0.099 0.901 41 H 0.100 0.900 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 18.286 1.850 0.042 18.379 hybrid contribution -0.741 1.036 0.092 1.278 sum 17.544 2.887 0.134 17.781 Atomic orbital electron populations 1.69895 1.07359 1.26707 1.59476 1.25550 0.96123 1.01448 1.02508 0.85506 0.79065 0.79396 0.78394 1.20111 1.22406 1.16373 1.19009 0.82380 0.93462 1.41446 0.92802 1.42265 1.02059 1.02925 1.89208 1.21216 0.90859 0.88083 0.94123 0.92148 1.24193 0.97565 1.00702 0.99736 1.21392 0.98247 0.81366 0.94090 0.88630 1.45855 1.46338 1.09539 1.33830 1.21178 0.78053 0.91855 0.78900 1.90665 1.43208 1.59656 1.52433 1.21656 1.03477 0.91638 1.01199 1.21803 1.00757 0.96465 0.97908 1.22190 0.94301 0.96108 0.86950 1.92729 1.74495 1.95820 1.58788 1.23353 0.95403 1.00698 0.92995 1.22623 0.98957 0.97609 0.97384 1.22772 0.96842 0.95388 1.01240 1.22549 0.98368 0.95130 0.97582 0.93392 0.80237 0.93638 0.88189 0.76242 0.85346 0.87229 0.91973 0.90903 0.87976 0.89011 0.90378 0.91725 0.89862 0.90078 0.89989 0.88921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -61.20 13.97 21.65 0.30 -60.90 16 2 C -0.07 -3.64 5.50 84.86 0.47 -3.18 16 3 Si 0.95 41.16 27.73 68.60 1.90 43.07 16 4 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 5 H -0.30 -13.31 7.11 99.48 0.71 -12.60 16 6 H -0.24 -8.48 6.40 99.48 0.64 -7.84 16 7 C -0.23 -12.58 10.46 84.04 0.88 -11.70 16 8 H 0.05 3.27 8.06 -2.91 -0.02 3.25 16 9 N -0.72 -30.77 4.78 -321.56 -1.54 -32.31 16 10 C 0.17 5.93 4.35 45.28 0.20 6.13 16 11 H 0.06 2.27 8.12 -2.39 -0.02 2.25 16 12 C -0.18 -5.96 7.68 31.23 0.24 -5.72 16 13 C 0.15 4.50 4.07 45.28 0.18 4.68 16 14 H 0.10 2.79 7.54 -2.39 -0.02 2.77 16 15 N -0.70 -20.09 4.72 -441.17 -2.08 -22.17 16 16 C 0.51 14.40 7.83 87.66 0.69 15.09 16 17 O -0.58 -20.21 15.62 -3.03 -0.05 -20.25 16 18 C -0.14 -2.71 5.70 29.85 0.17 -2.54 16 19 C -0.13 -2.60 4.96 30.59 0.15 -2.45 16 20 C 0.06 0.92 7.55 71.98 0.54 1.46 16 21 F -0.24 -5.27 17.36 44.97 0.78 -4.49 16 22 C -0.12 -3.31 0.77 -52.31 -0.04 -3.35 16 23 C -0.13 -3.17 7.18 30.89 0.22 -2.95 16 24 C -0.13 -2.42 8.08 31.23 0.25 -2.17 16 25 C -0.10 -2.07 7.84 30.88 0.24 -1.83 16 26 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 27 H 0.36 14.23 3.25 -92.71 -0.30 13.93 16 28 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.10 2.87 8.14 -2.39 -0.02 2.85 16 30 H 0.40 11.32 5.82 -92.71 -0.54 10.78 16 31 H 0.13 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.06 1.48 8.10 -2.38 -0.02 1.46 16 34 H 0.07 1.57 8.10 -2.39 -0.02 1.55 16 35 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.09 1.16 8.14 -2.38 -0.02 1.14 16 37 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 38 H 0.06 1.53 7.51 -2.39 -0.02 1.51 16 39 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -69.86 341.15 3.62 -66.24 By element: Atomic # 1 Polarization: 39.24 SS G_CDS: 0.11 Total: 39.34 kcal Atomic # 6 Polarization: -12.72 SS G_CDS: 4.20 Total: -8.52 kcal Atomic # 7 Polarization: -112.07 SS G_CDS: -3.32 Total: -115.38 kcal Atomic # 8 Polarization: -20.21 SS G_CDS: -0.05 Total: -20.25 kcal Atomic # 9 Polarization: -5.27 SS G_CDS: 0.78 Total: -4.49 kcal Atomic # 14 Polarization: 41.16 SS G_CDS: 1.90 Total: 43.07 kcal Total: -69.86 3.62 -66.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203274028.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.406 kcal (2) G-P(sol) polarization free energy of solvation -69.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds