Wall clock time and date at job start Tue Mar 31 2020 06:34:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86799 * 120.00189 * 2 1 4 4 H 1.48499 * 109.47401 * 270.00435 * 3 2 1 5 5 H 1.48501 * 109.46763 * 29.99940 * 3 2 1 6 6 H 1.48496 * 109.47176 * 149.99943 * 3 2 1 7 7 C 1.38816 * 120.00000 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00144 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99764 * 359.97438 * 7 2 1 10 10 C 1.46503 * 120.00029 * 179.97438 * 9 7 2 11 11 H 1.09000 * 112.88538 * 336.34982 * 10 9 7 12 12 C 1.53949 * 113.74494 * 107.77307 * 10 9 7 13 13 C 1.53944 * 87.29753 * 139.21947 * 12 10 9 14 14 H 1.08999 * 113.74986 * 220.78450 * 13 12 10 15 15 N 1.46507 * 113.66408 * 89.73889 * 13 12 10 16 16 C 1.34775 * 119.99901 * 107.81598 * 15 13 12 17 17 O 1.21279 * 120.00300 * 359.97438 * 16 15 13 18 18 C 1.50703 * 119.99773 * 180.02562 * 16 15 13 19 19 C 1.52996 * 109.47130 * 179.97438 * 18 16 15 20 20 C 1.52997 * 109.47131 * 179.97438 * 19 18 16 21 21 F 1.39905 * 109.47157 * 180.02562 * 20 19 18 22 22 C 1.52903 * 113.66535 * 205.00221 * 10 9 7 23 23 C 1.52910 * 121.14103 * 346.25759 * 22 10 9 24 24 C 1.53949 * 86.78144 * 100.81673 * 23 22 10 25 25 C 1.52913 * 121.13488 * 94.81991 * 22 10 9 26 26 H 0.97003 * 119.99821 * 359.97438 * 1 2 3 27 27 H 0.97000 * 120.00475 * 0.02562 * 9 7 2 28 28 H 1.09003 * 113.58159 * 24.61298 * 12 10 9 29 29 H 1.09001 * 113.58221 * 253.82334 * 12 10 9 30 30 H 0.97005 * 119.99489 * 287.81355 * 15 13 12 31 31 H 1.09001 * 109.46980 * 59.99839 * 18 16 15 32 32 H 1.08996 * 109.46805 * 299.99819 * 18 16 15 33 33 H 1.09001 * 109.46993 * 59.99687 * 19 18 16 34 34 H 1.09000 * 109.47380 * 300.00582 * 19 18 16 35 35 H 1.09001 * 109.46832 * 60.00325 * 20 19 18 36 36 H 1.09004 * 109.47261 * 300.00306 * 20 19 18 37 37 H 1.08995 * 113.66486 * 215.29358 * 23 22 10 38 38 H 1.09004 * 113.65469 * 346.35020 * 23 22 10 39 39 H 1.09000 * 113.58372 * 270.13408 * 24 23 22 40 40 H 1.09002 * 113.64784 * 139.34877 * 24 23 22 41 41 H 1.08993 * 113.66206 * 13.64982 * 25 22 10 42 42 H 1.09000 * 113.66315 * 144.61514 * 25 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0465 -1.4000 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0017 11 1 3.0663 -3.5639 -0.4052 12 6 1.9965 -4.4094 1.3400 13 6 1.8273 -5.7032 0.5232 14 1 1.0978 -6.3955 0.9435 15 7 3.0953 -6.3514 0.1790 16 6 3.4550 -7.4964 0.7921 17 8 2.7293 -7.9901 1.6291 18 6 4.7596 -8.1628 0.4384 19 6 4.9250 -9.4349 1.2723 20 6 6.2492 -10.1118 0.9128 21 9 6.4002 -11.2752 1.6749 22 6 1.2653 -4.8227 -0.5935 23 6 -0.2412 -4.7141 -0.8323 24 6 0.0994 -4.4598 -2.3119 25 6 1.4168 -5.2166 -2.0632 26 1 -0.4850 0.8401 0.0004 27 1 0.3556 -2.3881 -0.0005 28 1 1.1238 -4.1565 1.9421 29 1 2.9275 -4.3693 1.9055 30 1 3.6759 -5.9564 -0.4903 31 1 5.5842 -7.4815 0.6481 32 1 4.7609 -8.4197 -0.6209 33 1 4.1004 -10.1163 1.0630 34 1 4.9238 -9.1777 2.3315 35 1 7.0740 -9.4305 1.1219 36 1 6.2499 -10.3690 -0.1464 37 1 -0.7795 -5.6463 -0.6612 38 1 -0.7022 -3.8598 -0.3365 39 1 0.2407 -3.4060 -2.5520 40 1 -0.5695 -4.9661 -3.0078 41 1 2.2802 -4.7639 -2.5506 42 1 1.3460 -6.2902 -2.2379 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001203274029.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:05 Heat of formation + Delta-G solvation = -48.159609 kcal Electronic energy + Delta-G solvation = -22581.590471 eV Core-core repulsion = 19091.063120 eV Total energy + Delta-G solvation = -3490.527351 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.164 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -47.85866 -40.65397 -39.09480 -35.09757 -34.21388 -34.05580 -32.25597 -29.94114 -27.56355 -25.47495 -24.64659 -24.14024 -22.76517 -21.88659 -20.66851 -19.99010 -18.00099 -17.40650 -16.86405 -16.79041 -16.15560 -15.71572 -15.34800 -15.19229 -14.96905 -14.71669 -14.14762 -13.83785 -13.50722 -13.36658 -12.61089 -12.49807 -12.22692 -12.03545 -11.86690 -11.76001 -11.66499 -11.38549 -11.30829 -10.94794 -10.91113 -10.85288 -10.62047 -10.20025 -10.16896 -9.89926 -9.84404 -9.63048 -9.40951 -8.88275 -8.70353 -7.00756 -5.83358 -3.12007 2.63626 3.13172 3.38902 3.44607 3.46229 4.32608 4.44308 4.45142 4.53657 4.70937 4.77063 4.93327 4.95920 5.01478 5.07994 5.21225 5.23236 5.26410 5.41308 5.42451 5.67024 5.67402 5.82367 5.93246 5.94697 5.98187 6.03599 6.09116 6.16685 6.28279 6.39801 6.47862 6.55173 6.62907 6.86538 6.91116 7.03548 7.59306 7.64163 8.27135 8.35394 9.46976 10.04253 10.38974 11.38861 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.023039 B = 0.003394 C = 0.003134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.029595 B = 8248.009754 C = 8933.226000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.011 4.011 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.245 4.245 8 H 0.070 0.930 9 N -0.708 5.708 10 C 0.192 3.808 11 H 0.075 0.925 12 C -0.175 4.175 13 C 0.128 3.872 14 H 0.095 0.905 15 N -0.703 5.703 16 C 0.512 3.488 17 O -0.544 6.544 18 C -0.140 4.140 19 C -0.138 4.138 20 C 0.061 3.939 21 F -0.219 7.219 22 C -0.122 4.122 23 C -0.110 4.110 24 C -0.131 4.131 25 C -0.125 4.125 26 H 0.256 0.744 27 H 0.387 0.613 28 H 0.085 0.915 29 H 0.058 0.942 30 H 0.400 0.600 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.079 0.921 39 H 0.090 0.910 40 H 0.056 0.944 41 H 0.064 0.936 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.839 -16.547 -3.425 19.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.207 4.207 3 Si 0.737 3.263 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.376 4.376 8 H 0.088 0.912 9 N -0.346 5.346 10 C 0.079 3.921 11 H 0.093 0.907 12 C -0.217 4.217 13 C 0.023 3.977 14 H 0.113 0.887 15 N -0.353 5.353 16 C 0.299 3.701 17 O -0.421 6.421 18 C -0.180 4.180 19 C -0.177 4.177 20 C 0.006 3.994 21 F -0.200 7.200 22 C -0.125 4.125 23 C -0.148 4.148 24 C -0.169 4.169 25 C -0.163 4.163 26 H 0.066 0.934 27 H 0.223 0.777 28 H 0.104 0.896 29 H 0.077 0.923 30 H 0.234 0.766 31 H 0.115 0.885 32 H 0.114 0.886 33 H 0.100 0.900 34 H 0.101 0.899 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.097 0.903 39 H 0.108 0.892 40 H 0.075 0.925 41 H 0.082 0.918 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 8.422 -16.727 -2.808 18.937 hybrid contribution 0.432 1.169 -0.251 1.272 sum 8.854 -15.558 -3.059 18.160 Atomic orbital electron populations 1.69656 1.05110 1.25794 1.57303 1.24748 0.95497 0.97722 1.02724 0.86206 0.78703 0.83869 0.77490 1.21720 1.21766 1.20758 1.19276 0.91019 0.84198 1.43121 0.91189 1.42401 1.05922 0.99567 1.86756 1.21274 0.94279 0.84570 0.91947 0.90686 1.24268 1.01893 0.95519 1.00010 1.21720 0.85244 0.93503 0.97259 0.88736 1.45631 1.22360 1.24736 1.42548 1.20512 0.87758 0.80608 0.81267 1.90708 1.54131 1.64357 1.32927 1.21550 0.96498 0.97827 1.02121 1.21901 0.97398 0.96470 1.01882 1.22015 0.98778 0.83622 0.94939 1.92772 1.96951 1.51764 1.78543 1.23592 0.97692 0.98086 0.93083 1.22451 0.93875 1.01623 0.96859 1.22740 0.96580 1.01454 0.96086 1.22632 0.98561 0.99175 0.95920 0.93413 0.77688 0.89639 0.92343 0.76557 0.88486 0.88583 0.89980 0.89900 0.90696 0.90753 0.90799 0.90284 0.89173 0.92503 0.91771 0.91020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.26 13.06 55.49 0.72 -26.54 16 2 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 3 Si 0.91 21.80 29.55 -169.99 -5.02 16.77 16 4 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.24 -6.51 9.97 -15.06 -0.15 -6.66 16 8 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 9 N -0.71 -16.72 5.33 -52.99 -0.28 -17.00 16 10 C 0.19 3.55 4.27 -67.48 -0.29 3.26 16 11 H 0.08 1.36 8.10 -51.93 -0.42 0.94 16 12 C -0.17 -3.03 7.68 -25.75 -0.20 -3.23 16 13 C 0.13 1.91 4.12 -67.48 -0.28 1.63 16 14 H 0.09 1.54 7.46 -51.93 -0.39 1.15 16 15 N -0.70 -8.44 5.05 -53.37 -0.27 -8.71 16 16 C 0.51 6.30 7.83 -10.98 -0.09 6.21 16 17 O -0.54 -9.03 15.58 5.56 0.09 -8.94 16 18 C -0.14 -1.06 5.70 -27.88 -0.16 -1.22 16 19 C -0.14 -1.18 4.96 -26.73 -0.13 -1.32 16 20 C 0.06 0.42 7.55 37.16 0.28 0.70 16 21 F -0.22 -2.24 17.36 2.25 0.04 -2.20 16 22 C -0.12 -1.88 0.92 -154.71 -0.14 -2.02 16 23 C -0.11 -1.73 7.47 -26.28 -0.20 -1.93 16 24 C -0.13 -1.98 8.08 -25.75 -0.21 -2.19 16 25 C -0.13 -1.70 7.49 -26.28 -0.20 -1.89 16 26 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 27 H 0.39 9.73 5.92 -40.82 -0.24 9.49 16 28 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 29 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 30 H 0.40 3.90 8.62 -40.82 -0.35 3.55 16 31 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.08 0.81 8.10 -51.93 -0.42 0.39 16 34 H 0.08 0.84 8.10 -51.93 -0.42 0.42 16 35 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.08 1.43 6.42 -51.93 -0.33 1.10 16 39 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 40 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 347.21 15.07 5.23 5.23 Total: -1.00 -31.50 347.21 -8.12 -39.62 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: -6.77 Total: 10.82 kcal Atomic # 6 Polarization: -7.19 SS G_CDS: -1.85 Total: -9.04 kcal Atomic # 7 Polarization: -52.43 SS G_CDS: 0.17 Total: -52.25 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: 0.09 Total: -8.94 kcal Atomic # 9 Polarization: -2.24 SS G_CDS: 0.04 Total: -2.20 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.50 -8.12 -39.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203274029.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.541 kcal (2) G-P(sol) polarization free energy of solvation -31.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds