Wall clock time and date at job start Tue Mar 31 2020 06:34:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86799 * 120.00189 * 2 1 4 4 H 1.48499 * 109.47401 * 270.00435 * 3 2 1 5 5 H 1.48501 * 109.46763 * 29.99940 * 3 2 1 6 6 H 1.48496 * 109.47176 * 149.99943 * 3 2 1 7 7 C 1.38816 * 120.00000 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00144 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99764 * 359.97438 * 7 2 1 10 10 C 1.46503 * 120.00029 * 179.97438 * 9 7 2 11 11 H 1.09000 * 112.88538 * 336.34982 * 10 9 7 12 12 C 1.53949 * 113.74494 * 107.77307 * 10 9 7 13 13 C 1.53944 * 87.29753 * 139.21947 * 12 10 9 14 14 H 1.08999 * 113.74986 * 220.78450 * 13 12 10 15 15 N 1.46507 * 113.66408 * 89.73889 * 13 12 10 16 16 C 1.34775 * 119.99901 * 107.81598 * 15 13 12 17 17 O 1.21279 * 120.00300 * 359.97438 * 16 15 13 18 18 C 1.50703 * 119.99773 * 180.02562 * 16 15 13 19 19 C 1.52996 * 109.47130 * 179.97438 * 18 16 15 20 20 C 1.52997 * 109.47131 * 179.97438 * 19 18 16 21 21 F 1.39905 * 109.47157 * 180.02562 * 20 19 18 22 22 C 1.52903 * 113.66535 * 205.00221 * 10 9 7 23 23 C 1.52910 * 121.14103 * 346.25759 * 22 10 9 24 24 C 1.53949 * 86.78144 * 100.81673 * 23 22 10 25 25 C 1.52913 * 121.13488 * 94.81991 * 22 10 9 26 26 H 0.97003 * 119.99821 * 359.97438 * 1 2 3 27 27 H 0.97000 * 120.00475 * 0.02562 * 9 7 2 28 28 H 1.09003 * 113.58159 * 24.61298 * 12 10 9 29 29 H 1.09001 * 113.58221 * 253.82334 * 12 10 9 30 30 H 0.97005 * 119.99489 * 287.81355 * 15 13 12 31 31 H 1.09001 * 109.46980 * 59.99839 * 18 16 15 32 32 H 1.08996 * 109.46805 * 299.99819 * 18 16 15 33 33 H 1.09001 * 109.46993 * 59.99687 * 19 18 16 34 34 H 1.09000 * 109.47380 * 300.00582 * 19 18 16 35 35 H 1.09001 * 109.46832 * 60.00325 * 20 19 18 36 36 H 1.09004 * 109.47261 * 300.00306 * 20 19 18 37 37 H 1.08995 * 113.66486 * 215.29358 * 23 22 10 38 38 H 1.09004 * 113.65469 * 346.35020 * 23 22 10 39 39 H 1.09000 * 113.58372 * 270.13408 * 24 23 22 40 40 H 1.09002 * 113.64784 * 139.34877 * 24 23 22 41 41 H 1.08993 * 113.66206 * 13.64982 * 25 22 10 42 42 H 1.09000 * 113.66315 * 144.61514 * 25 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0465 -1.4000 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0017 11 1 3.0663 -3.5639 -0.4052 12 6 1.9965 -4.4094 1.3400 13 6 1.8273 -5.7032 0.5232 14 1 1.0978 -6.3955 0.9435 15 7 3.0953 -6.3514 0.1790 16 6 3.4550 -7.4964 0.7921 17 8 2.7293 -7.9901 1.6291 18 6 4.7596 -8.1628 0.4384 19 6 4.9250 -9.4349 1.2723 20 6 6.2492 -10.1118 0.9128 21 9 6.4002 -11.2752 1.6749 22 6 1.2653 -4.8227 -0.5935 23 6 -0.2412 -4.7141 -0.8323 24 6 0.0994 -4.4598 -2.3119 25 6 1.4168 -5.2166 -2.0632 26 1 -0.4850 0.8401 0.0004 27 1 0.3556 -2.3881 -0.0005 28 1 1.1238 -4.1565 1.9421 29 1 2.9275 -4.3693 1.9055 30 1 3.6759 -5.9564 -0.4903 31 1 5.5842 -7.4815 0.6481 32 1 4.7609 -8.4197 -0.6209 33 1 4.1004 -10.1163 1.0630 34 1 4.9238 -9.1777 2.3315 35 1 7.0740 -9.4305 1.1219 36 1 6.2499 -10.3690 -0.1464 37 1 -0.7795 -5.6463 -0.6612 38 1 -0.7022 -3.8598 -0.3365 39 1 0.2407 -3.4060 -2.5520 40 1 -0.5695 -4.9661 -3.0078 41 1 2.2802 -4.7639 -2.5506 42 1 1.3460 -6.2902 -2.2379 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001203274029.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:04 Heat of formation + Delta-G solvation = -68.348992 kcal Electronic energy + Delta-G solvation = -22582.465948 eV Core-core repulsion = 19091.063120 eV Total energy + Delta-G solvation = -3491.402828 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.164 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -48.51401 -41.91170 -40.18288 -36.37237 -35.76965 -34.92233 -33.72819 -31.72158 -28.32891 -26.69133 -26.38266 -25.48651 -23.98856 -22.98203 -21.73415 -21.11490 -19.60886 -18.80036 -18.06702 -17.41506 -17.19857 -16.73842 -16.54061 -16.36064 -16.11102 -15.83408 -15.47042 -15.34705 -14.72368 -14.40608 -14.09494 -13.81258 -13.42699 -13.32243 -13.16750 -12.87619 -12.85699 -12.74565 -12.48007 -12.35496 -12.13941 -11.96608 -11.90810 -11.86270 -11.50354 -11.30239 -11.19374 -10.88185 -10.80959 -10.67330 -9.87610 -8.95147 -7.93137 -5.20644 1.48176 1.49093 1.57309 1.68675 2.16655 2.57151 3.38103 3.50596 3.58207 3.73912 3.79495 3.80535 3.92231 3.96219 4.02674 4.14369 4.20915 4.27806 4.34688 4.48144 4.59519 4.65058 4.71944 4.75964 4.81897 4.88049 4.92031 5.03675 5.05640 5.09950 5.13852 5.19814 5.27622 5.33446 5.50545 5.60418 5.64829 5.71641 6.28928 6.64818 7.33430 7.35929 8.13397 8.36091 9.30164 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.023039 B = 0.003394 C = 0.003134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.029595 B = 8248.009754 C = 8933.226000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.075 4.075 3 Si 0.969 3.031 4 H -0.287 1.287 5 H -0.301 1.301 6 H -0.269 1.269 7 C -0.240 4.240 8 H 0.078 0.922 9 N -0.721 5.721 10 C 0.180 3.820 11 H 0.085 0.915 12 C -0.175 4.175 13 C 0.148 3.852 14 H 0.083 0.917 15 N -0.694 5.694 16 C 0.508 3.492 17 O -0.593 6.593 18 C -0.128 4.128 19 C -0.137 4.137 20 C 0.060 3.940 21 F -0.242 7.242 22 C -0.114 4.114 23 C -0.115 4.115 24 C -0.131 4.131 25 C -0.106 4.106 26 H 0.249 0.751 27 H 0.376 0.624 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.416 0.584 31 H 0.125 0.875 32 H 0.132 0.868 33 H 0.063 0.937 34 H 0.058 0.942 35 H 0.098 0.902 36 H 0.101 0.899 37 H 0.094 0.906 38 H 0.045 0.955 39 H 0.056 0.944 40 H 0.079 0.921 41 H 0.073 0.927 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.316 -17.943 -5.054 21.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.267 4.267 3 Si 0.799 3.201 4 H -0.214 1.214 5 H -0.228 1.228 6 H -0.194 1.194 7 C -0.372 4.372 8 H 0.096 0.904 9 N -0.359 5.359 10 C 0.070 3.930 11 H 0.103 0.897 12 C -0.217 4.217 13 C 0.041 3.959 14 H 0.101 0.899 15 N -0.344 5.344 16 C 0.297 3.703 17 O -0.473 6.473 18 C -0.167 4.167 19 C -0.176 4.176 20 C 0.005 3.995 21 F -0.223 7.223 22 C -0.116 4.116 23 C -0.153 4.153 24 C -0.169 4.169 25 C -0.143 4.143 26 H 0.058 0.942 27 H 0.210 0.790 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.253 0.747 31 H 0.143 0.857 32 H 0.150 0.850 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.116 0.884 36 H 0.120 0.880 37 H 0.113 0.887 38 H 0.064 0.936 39 H 0.075 0.925 40 H 0.097 0.903 41 H 0.091 0.909 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 10.970 -18.161 -4.459 21.681 hybrid contribution -0.341 1.535 0.302 1.601 sum 10.628 -16.626 -4.157 20.166 Atomic orbital electron populations 1.69818 1.06618 1.25909 1.59689 1.25515 0.96264 1.00962 1.03963 0.85197 0.77730 0.79820 0.77361 1.21396 1.22756 1.19433 1.19697 0.91551 0.85299 1.40664 0.90374 1.42572 1.05620 1.00680 1.87036 1.21575 0.94850 0.83479 0.93140 0.89681 1.24133 1.00927 0.97237 0.99367 1.21324 0.86467 0.92173 0.95909 0.89927 1.45527 1.21399 1.24657 1.42828 1.21407 0.88794 0.80055 0.80047 1.90700 1.55984 1.65553 1.35069 1.21579 0.94147 0.97157 1.03823 1.21847 0.98044 0.96893 1.00780 1.22225 0.98219 0.83015 0.96027 1.92729 1.96985 1.53218 1.79358 1.23347 0.97146 0.96230 0.94865 1.22512 0.94188 1.01274 0.97334 1.22654 0.98350 1.00017 0.95862 1.22593 0.97788 1.00496 0.93439 0.94170 0.79016 0.91919 0.92315 0.74750 0.85653 0.85011 0.91859 0.92308 0.88398 0.88035 0.88726 0.93596 0.92507 0.90260 0.90858 0.88343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.58 13.06 21.65 0.28 -58.30 16 2 C -0.07 -4.20 5.50 84.86 0.47 -3.74 16 3 Si 0.97 45.26 29.55 68.60 2.03 47.29 16 4 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 5 H -0.30 -14.36 7.11 99.48 0.71 -13.66 16 6 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 7 C -0.24 -12.83 9.97 84.03 0.84 -12.00 16 8 H 0.08 3.96 7.83 -2.91 -0.02 3.94 16 9 N -0.72 -34.71 5.33 -321.57 -1.71 -36.42 16 10 C 0.18 6.55 4.27 45.28 0.19 6.75 16 11 H 0.09 2.92 8.10 -2.39 -0.02 2.90 16 12 C -0.17 -6.06 7.68 31.23 0.24 -5.82 16 13 C 0.15 4.22 4.12 45.28 0.19 4.41 16 14 H 0.08 2.64 7.46 -2.39 -0.02 2.62 16 15 N -0.69 -14.69 5.05 -441.15 -2.23 -16.92 16 16 C 0.51 11.28 7.83 87.66 0.69 11.97 16 17 O -0.59 -19.28 15.58 -3.03 -0.05 -19.32 16 18 C -0.13 -1.44 5.70 29.85 0.17 -1.27 16 19 C -0.14 -2.07 4.96 30.59 0.15 -1.92 16 20 C 0.06 0.63 7.55 71.98 0.54 1.17 16 21 F -0.24 -4.58 17.36 44.97 0.78 -3.79 16 22 C -0.11 -3.35 0.92 -52.31 -0.05 -3.40 16 23 C -0.12 -3.59 7.47 30.88 0.23 -3.36 16 24 C -0.13 -3.80 8.08 31.23 0.25 -3.54 16 25 C -0.11 -2.54 7.49 30.89 0.23 -2.31 16 26 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 27 H 0.38 19.71 5.92 -92.71 -0.55 19.16 16 28 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 29 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.42 6.41 8.62 -92.70 -0.80 5.61 16 31 H 0.13 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.13 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.06 1.18 8.10 -2.39 -0.02 1.16 16 34 H 0.06 1.16 8.10 -2.39 -0.02 1.14 16 35 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.10 0.55 8.14 -2.38 -0.02 0.53 16 37 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 38 H 0.05 1.74 6.42 -2.38 -0.02 1.73 16 39 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 42 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -71.52 347.21 2.92 -68.60 By element: Atomic # 1 Polarization: 32.26 SS G_CDS: -0.33 Total: 31.93 kcal Atomic # 6 Polarization: -17.21 SS G_CDS: 4.14 Total: -13.07 kcal Atomic # 7 Polarization: -107.98 SS G_CDS: -3.66 Total: -111.63 kcal Atomic # 8 Polarization: -19.28 SS G_CDS: -0.05 Total: -19.32 kcal Atomic # 9 Polarization: -4.58 SS G_CDS: 0.78 Total: -3.79 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -71.52 2.92 -68.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203274029.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.251 kcal (2) G-P(sol) polarization free energy of solvation -71.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds