Wall clock time and date at job start Tue Mar 31 2020 06:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86796 * 119.99750 * 2 1 4 4 H 1.48505 * 109.47319 * 270.00019 * 3 2 1 5 5 H 1.48500 * 109.47329 * 30.00244 * 3 2 1 6 6 H 1.48504 * 109.47211 * 149.99987 * 3 2 1 7 7 C 1.38810 * 119.99976 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99607 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00041 * 0.02562 * 7 2 1 10 10 C 1.46497 * 119.99859 * 179.97438 * 9 7 2 11 11 H 1.09002 * 112.88754 * 336.35179 * 10 9 7 12 12 C 1.54148 * 113.80316 * 107.70541 * 10 9 7 13 13 C 1.53954 * 87.22777 * 139.16314 * 12 10 9 14 14 H 1.08997 * 113.66052 * 89.86382 * 13 12 10 15 15 N 1.46493 * 113.66138 * 220.82890 * 13 12 10 16 16 C 1.34784 * 119.99864 * 253.98455 * 15 13 12 17 17 O 1.21283 * 119.99649 * 359.72839 * 16 15 13 18 18 C 1.50694 * 119.99988 * 179.72721 * 16 15 13 19 19 C 1.53001 * 109.47168 * 179.97438 * 18 16 15 20 20 C 1.53000 * 109.47355 * 179.97438 * 19 18 16 21 21 F 1.39903 * 109.47019 * 179.97438 * 20 19 18 22 22 C 1.52908 * 86.88189 * 335.34593 * 13 12 10 23 23 C 1.52907 * 121.13963 * 259.13323 * 22 13 12 24 24 C 1.53943 * 86.78774 * 209.38049 * 23 22 13 25 25 C 1.52907 * 121.13759 * 150.56856 * 22 13 12 26 26 H 0.97004 * 120.00032 * 359.97438 * 1 2 3 27 27 H 0.97002 * 120.00009 * 0.02562 * 9 7 2 28 28 H 1.08996 * 113.58090 * 24.59249 * 12 10 9 29 29 H 1.08999 * 113.63850 * 253.74694 * 12 10 9 30 30 H 0.97000 * 120.00740 * 73.71147 * 15 13 12 31 31 H 1.08998 * 109.47224 * 299.99701 * 18 16 15 32 32 H 1.09002 * 109.47054 * 60.00213 * 18 16 15 33 33 H 1.09000 * 109.47339 * 299.99895 * 19 18 16 34 34 H 1.09002 * 109.46926 * 60.00175 * 19 18 16 35 35 H 1.09000 * 109.46966 * 300.00313 * 20 19 18 36 36 H 1.09002 * 109.46807 * 60.00291 * 20 19 18 37 37 H 1.09002 * 113.65768 * 323.85688 * 23 22 13 38 38 H 1.09003 * 113.66505 * 94.90652 * 23 22 13 39 39 H 1.08992 * 113.58361 * 270.13069 * 24 23 22 40 40 H 1.09001 * 113.58139 * 139.32925 * 24 23 22 41 41 H 1.08996 * 113.66613 * 265.08967 * 25 22 13 42 42 H 1.09003 * 113.66148 * 36.14926 * 25 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6567 0.0005 11 1 3.0667 -3.5639 -0.4023 12 6 1.9977 -4.4100 1.3441 13 6 1.8270 -5.7030 0.5261 14 1 2.7698 -6.1865 0.2704 15 7 0.8456 -6.6316 1.0922 16 6 1.2598 -7.7532 1.7144 17 8 2.4449 -7.9960 1.8012 18 6 0.2505 -8.7053 2.3022 19 6 0.9786 -9.8877 2.9447 20 6 -0.0461 -10.8542 3.5421 21 9 0.6197 -11.9356 4.1290 22 6 1.2657 -4.8229 -0.5913 23 6 -0.2405 -4.7144 -0.8313 24 6 0.1011 -4.4608 -2.3108 25 6 1.4184 -5.2175 -2.0607 26 1 -0.4850 0.8401 0.0004 27 1 0.3555 -2.3880 -0.0002 28 1 1.1256 -4.1571 1.9469 29 1 2.9290 -4.3712 1.9091 30 1 -0.1023 -6.4374 1.0228 31 1 -0.3401 -8.1877 3.0581 32 1 -0.4077 -9.0696 1.5134 33 1 1.5689 -10.4053 2.1885 34 1 1.6371 -9.5238 3.7334 35 1 -0.6361 -10.3364 4.2983 36 1 -0.7049 -11.2181 2.7536 37 1 -0.7790 -5.6465 -0.6602 38 1 -0.7019 -3.8599 -0.3362 39 1 0.2425 -3.4072 -2.5513 40 1 -0.5679 -4.9681 -3.0059 41 1 2.2821 -4.7649 -2.5478 42 1 1.3461 -6.2910 -2.2352 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001203274030.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:08 Heat of formation + Delta-G solvation = -48.886100 kcal Electronic energy + Delta-G solvation = -22562.824627 eV Core-core repulsion = 19072.265773 eV Total energy + Delta-G solvation = -3490.558854 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.164 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -47.85529 -40.62762 -39.08884 -34.93581 -34.22716 -34.09815 -32.44490 -29.95255 -27.61797 -25.53123 -24.55045 -24.17691 -22.80665 -21.65438 -20.49311 -20.19635 -18.01656 -17.42202 -16.79705 -16.77472 -16.29637 -15.81492 -15.36325 -15.13252 -14.95623 -14.56303 -14.43902 -13.74944 -13.54646 -13.03128 -12.78657 -12.50604 -12.21084 -12.10108 -11.91409 -11.72763 -11.53250 -11.33438 -11.24717 -10.94318 -10.93883 -10.81087 -10.74075 -10.22792 -10.07147 -10.00391 -9.89385 -9.62958 -9.45497 -8.88530 -8.67285 -7.00911 -5.83616 -3.11940 2.65401 3.20504 3.40084 3.46244 3.47256 4.34380 4.45273 4.45621 4.55104 4.71405 4.76990 4.91150 4.94447 4.97387 5.05563 5.21523 5.22145 5.23924 5.41699 5.42829 5.65979 5.67800 5.86624 5.88418 5.94402 5.95765 5.97716 6.03891 6.19802 6.30299 6.37266 6.48763 6.56898 6.59583 6.83285 6.89881 7.04020 7.61945 7.66358 8.28341 8.35384 9.47142 10.03430 10.38460 11.38694 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.027705 B = 0.003218 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.410836 B = 8698.939971 C = 9095.134937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.011 4.011 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.281 1.281 7 C -0.243 4.243 8 H 0.071 0.929 9 N -0.706 5.706 10 C 0.193 3.807 11 H 0.081 0.919 12 C -0.174 4.174 13 C 0.130 3.870 14 H 0.108 0.892 15 N -0.712 5.712 16 C 0.510 3.490 17 O -0.545 6.545 18 C -0.141 4.141 19 C -0.138 4.138 20 C 0.061 3.939 21 F -0.219 7.219 22 C -0.120 4.120 23 C -0.116 4.116 24 C -0.130 4.130 25 C -0.126 4.126 26 H 0.256 0.744 27 H 0.387 0.613 28 H 0.079 0.921 29 H 0.060 0.940 30 H 0.399 0.601 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.078 0.922 39 H 0.090 0.910 40 H 0.056 0.944 41 H 0.066 0.934 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.644 -17.994 1.597 18.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.207 4.207 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.374 4.374 8 H 0.089 0.911 9 N -0.344 5.344 10 C 0.080 3.920 11 H 0.099 0.901 12 C -0.217 4.217 13 C 0.025 3.975 14 H 0.126 0.874 15 N -0.362 5.362 16 C 0.296 3.704 17 O -0.423 6.423 18 C -0.181 4.181 19 C -0.176 4.176 20 C 0.006 3.994 21 F -0.200 7.200 22 C -0.122 4.122 23 C -0.154 4.154 24 C -0.167 4.167 25 C -0.164 4.164 26 H 0.065 0.935 27 H 0.222 0.778 28 H 0.098 0.902 29 H 0.079 0.921 30 H 0.234 0.766 31 H 0.114 0.886 32 H 0.113 0.887 33 H 0.100 0.900 34 H 0.101 0.899 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.097 0.903 39 H 0.109 0.891 40 H 0.075 0.925 41 H 0.085 0.915 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.667 -17.992 1.661 18.264 hybrid contribution -0.379 1.018 0.055 1.088 sum -3.046 -16.973 1.716 17.330 Atomic orbital electron populations 1.69651 1.05111 1.25771 1.57520 1.24736 0.95512 0.97724 1.02753 0.86197 0.78730 0.83780 0.77527 1.21698 1.21794 1.20711 1.19306 0.91133 0.84111 1.42887 0.91054 1.42341 1.05814 0.99481 1.86775 1.21089 0.94725 0.84356 0.91876 0.90102 1.24303 1.01740 0.95411 1.00228 1.22281 0.92560 0.87744 0.94891 0.87367 1.46016 1.10546 1.22234 1.57371 1.20537 0.89828 0.81845 0.78164 1.90703 1.17865 1.75263 1.58452 1.21561 0.98470 0.96244 1.01839 1.21899 0.98309 0.95316 1.02098 1.22017 0.94468 0.85035 0.97841 1.92771 1.83173 1.57816 1.86271 1.23606 0.97301 0.98102 0.93230 1.22424 0.94447 1.01087 0.97456 1.22729 0.96648 1.01583 0.95771 1.22706 0.98573 0.99182 0.95916 0.93461 0.77781 0.90239 0.92150 0.76591 0.88554 0.88685 0.89984 0.89913 0.90702 0.90775 0.91187 0.90297 0.89108 0.92540 0.91480 0.91057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.12 13.06 55.49 0.72 -26.40 16 2 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 3 Si 0.91 21.92 29.55 -169.99 -5.02 16.90 16 4 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.24 -6.50 9.97 -15.06 -0.15 -6.65 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 9 N -0.71 -16.62 5.33 -52.89 -0.28 -16.91 16 10 C 0.19 3.66 4.36 -67.38 -0.29 3.36 16 11 H 0.08 1.56 8.10 -51.93 -0.42 1.14 16 12 C -0.17 -3.02 7.70 -25.64 -0.20 -3.22 16 13 C 0.13 1.93 4.10 -67.48 -0.28 1.65 16 14 H 0.11 1.72 7.50 -51.93 -0.39 1.34 16 15 N -0.71 -8.65 5.27 -53.37 -0.28 -8.94 16 16 C 0.51 6.37 7.83 -10.98 -0.09 6.28 16 17 O -0.55 -9.09 15.60 5.56 0.09 -9.00 16 18 C -0.14 -1.10 5.70 -27.89 -0.16 -1.26 16 19 C -0.14 -1.20 4.96 -26.73 -0.13 -1.34 16 20 C 0.06 0.43 7.55 37.16 0.28 0.71 16 21 F -0.22 -2.27 17.36 2.25 0.04 -2.23 16 22 C -0.12 -1.83 1.07 -154.71 -0.16 -2.00 16 23 C -0.12 -1.68 6.78 -26.29 -0.18 -1.85 16 24 C -0.13 -1.92 8.08 -25.75 -0.21 -2.12 16 25 C -0.13 -1.79 7.84 -26.28 -0.21 -2.00 16 26 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 27 H 0.39 9.54 5.92 -40.82 -0.24 9.30 16 28 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 29 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.40 4.00 6.99 -40.82 -0.29 3.72 16 31 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.08 0.82 8.10 -51.93 -0.42 0.40 16 34 H 0.08 0.85 8.10 -51.93 -0.42 0.43 16 35 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.07 0.81 7.00 -51.93 -0.36 0.45 16 38 H 0.08 1.33 6.42 -51.93 -0.33 0.99 16 39 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 40 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 42 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 LS Contribution 344.61 15.07 5.19 5.19 Total: -1.00 -31.26 344.61 -8.06 -39.32 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: -6.65 Total: 10.90 kcal Atomic # 6 Polarization: -6.98 SS G_CDS: -1.87 Total: -8.84 kcal Atomic # 7 Polarization: -52.40 SS G_CDS: 0.16 Total: -52.24 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: 0.09 Total: -9.00 kcal Atomic # 9 Polarization: -2.27 SS G_CDS: 0.04 Total: -2.23 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.26 -8.06 -39.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203274030.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.568 kcal (2) G-P(sol) polarization free energy of solvation -31.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds