Wall clock time and date at job start Tue Mar 31 2020 06:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86796 * 119.99750 * 2 1 4 4 H 1.48505 * 109.47319 * 270.00019 * 3 2 1 5 5 H 1.48500 * 109.47329 * 30.00244 * 3 2 1 6 6 H 1.48504 * 109.47211 * 149.99987 * 3 2 1 7 7 C 1.38810 * 119.99976 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99607 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00041 * 0.02562 * 7 2 1 10 10 C 1.46497 * 119.99859 * 179.97438 * 9 7 2 11 11 H 1.09002 * 112.88754 * 336.35179 * 10 9 7 12 12 C 1.54148 * 113.80316 * 107.70541 * 10 9 7 13 13 C 1.53954 * 87.22777 * 139.16314 * 12 10 9 14 14 H 1.08997 * 113.66052 * 89.86382 * 13 12 10 15 15 N 1.46493 * 113.66138 * 220.82890 * 13 12 10 16 16 C 1.34784 * 119.99864 * 253.98455 * 15 13 12 17 17 O 1.21283 * 119.99649 * 359.72839 * 16 15 13 18 18 C 1.50694 * 119.99988 * 179.72721 * 16 15 13 19 19 C 1.53001 * 109.47168 * 179.97438 * 18 16 15 20 20 C 1.53000 * 109.47355 * 179.97438 * 19 18 16 21 21 F 1.39903 * 109.47019 * 179.97438 * 20 19 18 22 22 C 1.52908 * 86.88189 * 335.34593 * 13 12 10 23 23 C 1.52907 * 121.13963 * 259.13323 * 22 13 12 24 24 C 1.53943 * 86.78774 * 209.38049 * 23 22 13 25 25 C 1.52907 * 121.13759 * 150.56856 * 22 13 12 26 26 H 0.97004 * 120.00032 * 359.97438 * 1 2 3 27 27 H 0.97002 * 120.00009 * 0.02562 * 9 7 2 28 28 H 1.08996 * 113.58090 * 24.59249 * 12 10 9 29 29 H 1.08999 * 113.63850 * 253.74694 * 12 10 9 30 30 H 0.97000 * 120.00740 * 73.71147 * 15 13 12 31 31 H 1.08998 * 109.47224 * 299.99701 * 18 16 15 32 32 H 1.09002 * 109.47054 * 60.00213 * 18 16 15 33 33 H 1.09000 * 109.47339 * 299.99895 * 19 18 16 34 34 H 1.09002 * 109.46926 * 60.00175 * 19 18 16 35 35 H 1.09000 * 109.46966 * 300.00313 * 20 19 18 36 36 H 1.09002 * 109.46807 * 60.00291 * 20 19 18 37 37 H 1.09002 * 113.65768 * 323.85688 * 23 22 13 38 38 H 1.09003 * 113.66505 * 94.90652 * 23 22 13 39 39 H 1.08992 * 113.58361 * 270.13069 * 24 23 22 40 40 H 1.09001 * 113.58139 * 139.32925 * 24 23 22 41 41 H 1.08996 * 113.66613 * 265.08967 * 25 22 13 42 42 H 1.09003 * 113.66148 * 36.14926 * 25 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6567 0.0005 11 1 3.0667 -3.5639 -0.4023 12 6 1.9977 -4.4100 1.3441 13 6 1.8270 -5.7030 0.5261 14 1 2.7698 -6.1865 0.2704 15 7 0.8456 -6.6316 1.0922 16 6 1.2598 -7.7532 1.7144 17 8 2.4449 -7.9960 1.8012 18 6 0.2505 -8.7053 2.3022 19 6 0.9786 -9.8877 2.9447 20 6 -0.0461 -10.8542 3.5421 21 9 0.6197 -11.9356 4.1290 22 6 1.2657 -4.8229 -0.5913 23 6 -0.2405 -4.7144 -0.8313 24 6 0.1011 -4.4608 -2.3108 25 6 1.4184 -5.2175 -2.0607 26 1 -0.4850 0.8401 0.0004 27 1 0.3555 -2.3880 -0.0002 28 1 1.1256 -4.1571 1.9469 29 1 2.9290 -4.3712 1.9091 30 1 -0.1023 -6.4374 1.0228 31 1 -0.3401 -8.1877 3.0581 32 1 -0.4077 -9.0696 1.5134 33 1 1.5689 -10.4053 2.1885 34 1 1.6371 -9.5238 3.7334 35 1 -0.6361 -10.3364 4.2983 36 1 -0.7049 -11.2181 2.7536 37 1 -0.7790 -5.6465 -0.6602 38 1 -0.7019 -3.8599 -0.3362 39 1 0.2425 -3.4072 -2.5513 40 1 -0.5679 -4.9681 -3.0059 41 1 2.2821 -4.7649 -2.5478 42 1 1.3461 -6.2910 -2.2352 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001203274030.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:08 Heat of formation + Delta-G solvation = -68.817657 kcal Electronic energy + Delta-G solvation = -22563.688924 eV Core-core repulsion = 19072.265773 eV Total energy + Delta-G solvation = -3491.423151 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.164 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -48.52100 -41.88423 -40.18133 -36.27543 -35.74083 -34.92495 -33.95098 -31.76607 -28.39727 -26.78747 -26.22816 -25.50097 -24.02513 -22.68389 -21.78394 -21.21501 -19.64073 -18.79490 -18.03068 -17.50379 -17.37700 -16.67406 -16.45587 -16.31130 -16.08760 -16.04750 -15.58977 -15.03730 -14.80732 -14.45058 -14.18266 -13.75454 -13.47335 -13.18548 -13.10261 -12.91150 -12.85090 -12.72844 -12.38168 -12.29863 -12.23326 -12.05771 -11.96737 -11.86229 -11.51201 -11.34175 -11.22003 -10.98141 -10.77179 -10.68470 -9.85084 -8.95263 -7.94788 -5.21447 1.47433 1.47516 1.56012 1.69053 2.23591 2.56799 3.36279 3.50254 3.58552 3.67786 3.77979 3.79630 3.91912 3.95833 4.02514 4.13000 4.19808 4.27411 4.34675 4.46899 4.57002 4.65192 4.71004 4.75062 4.79975 4.85484 4.86480 5.02620 5.04782 5.09805 5.14549 5.22104 5.29793 5.39293 5.50961 5.52933 5.64820 5.72712 6.28089 6.65233 7.33025 7.35580 8.11400 8.36499 9.28099 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.027705 B = 0.003218 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.410836 B = 8698.939971 C = 9095.134937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.070 4.070 3 Si 0.967 3.033 4 H -0.288 1.288 5 H -0.296 1.296 6 H -0.274 1.274 7 C -0.243 4.243 8 H 0.071 0.929 9 N -0.715 5.715 10 C 0.173 3.827 11 H 0.072 0.928 12 C -0.170 4.170 13 C 0.150 3.850 14 H 0.100 0.900 15 N -0.703 5.703 16 C 0.506 3.494 17 O -0.592 6.592 18 C -0.129 4.129 19 C -0.137 4.137 20 C 0.060 3.940 21 F -0.241 7.241 22 C -0.111 4.111 23 C -0.108 4.108 24 C -0.130 4.130 25 C -0.117 4.117 26 H 0.251 0.749 27 H 0.379 0.621 28 H 0.071 0.929 29 H 0.051 0.949 30 H 0.413 0.587 31 H 0.123 0.877 32 H 0.131 0.869 33 H 0.063 0.937 34 H 0.058 0.942 35 H 0.097 0.903 36 H 0.101 0.899 37 H 0.110 0.890 38 H 0.051 0.949 39 H 0.052 0.948 40 H 0.083 0.917 41 H 0.057 0.943 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.907 -19.882 1.413 20.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.263 4.263 3 Si 0.796 3.204 4 H -0.215 1.215 5 H -0.223 1.223 6 H -0.199 1.199 7 C -0.375 4.375 8 H 0.089 0.911 9 N -0.354 5.354 10 C 0.062 3.938 11 H 0.090 0.910 12 C -0.212 4.212 13 C 0.044 3.956 14 H 0.118 0.882 15 N -0.354 5.354 16 C 0.294 3.706 17 O -0.473 6.473 18 C -0.169 4.169 19 C -0.175 4.175 20 C 0.005 3.995 21 F -0.223 7.223 22 C -0.114 4.114 23 C -0.146 4.146 24 C -0.168 4.168 25 C -0.155 4.155 26 H 0.060 0.940 27 H 0.214 0.786 28 H 0.090 0.910 29 H 0.070 0.930 30 H 0.251 0.749 31 H 0.141 0.859 32 H 0.149 0.851 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.115 0.885 36 H 0.120 0.880 37 H 0.129 0.871 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.102 0.898 41 H 0.076 0.924 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -3.926 -19.923 1.480 20.360 hybrid contribution 0.075 1.551 0.121 1.557 sum -3.851 -18.372 1.601 18.839 Atomic orbital electron populations 1.69787 1.06332 1.25960 1.59491 1.25441 0.96325 1.00667 1.03819 0.85239 0.77723 0.80048 0.77342 1.21517 1.22253 1.19863 1.19647 0.91388 0.85481 1.40989 0.91057 1.42420 1.05566 1.00224 1.87167 1.21350 0.94741 0.83953 0.93800 0.91049 1.24146 1.00975 0.96929 0.99170 1.21831 0.92986 0.87207 0.93602 0.88214 1.45878 1.10718 1.21703 1.57053 1.21404 0.90076 0.81947 0.77134 1.90694 1.20283 1.76255 1.60073 1.21587 0.97351 0.94676 1.03270 1.21843 0.98610 0.96051 1.01008 1.22223 0.93928 0.84133 0.99200 1.92728 1.83786 1.58994 1.86749 1.23355 0.97880 0.95765 0.94353 1.22468 0.93514 1.01905 0.96675 1.22640 0.97723 0.99726 0.96707 1.22713 0.97872 1.00598 0.94271 0.94032 0.78610 0.90996 0.93047 0.74910 0.85855 0.85108 0.91791 0.92323 0.88457 0.88045 0.87148 0.93011 0.92895 0.89825 0.92423 0.88304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.44 13.06 21.65 0.28 -57.15 16 2 C -0.07 -3.94 5.50 84.86 0.47 -3.48 16 3 Si 0.97 45.77 29.55 68.60 2.03 47.80 16 4 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 5 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 6 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 7 C -0.24 -13.26 9.97 84.03 0.84 -12.42 16 8 H 0.07 3.80 7.83 -2.91 -0.02 3.77 16 9 N -0.72 -34.55 5.33 -321.24 -1.71 -36.26 16 10 C 0.17 6.64 4.36 45.35 0.20 6.84 16 11 H 0.07 2.84 8.10 -2.39 -0.02 2.83 16 12 C -0.17 -5.90 7.70 31.30 0.24 -5.66 16 13 C 0.15 4.25 4.10 45.28 0.19 4.43 16 14 H 0.10 3.09 7.50 -2.39 -0.02 3.07 16 15 N -0.70 -15.17 5.27 -441.16 -2.32 -17.49 16 16 C 0.51 11.43 7.83 87.65 0.69 12.12 16 17 O -0.59 -19.30 15.60 -3.04 -0.05 -19.35 16 18 C -0.13 -1.53 5.70 29.85 0.17 -1.36 16 19 C -0.14 -2.12 4.96 30.59 0.15 -1.96 16 20 C 0.06 0.65 7.55 71.98 0.54 1.19 16 21 F -0.24 -4.63 17.36 44.97 0.78 -3.84 16 22 C -0.11 -3.27 1.07 -52.31 -0.06 -3.33 16 23 C -0.11 -2.90 6.78 30.88 0.21 -2.69 16 24 C -0.13 -3.65 8.08 31.23 0.25 -3.40 16 25 C -0.12 -3.08 7.84 30.89 0.24 -2.84 16 26 H 0.25 14.54 8.31 -92.70 -0.77 13.77 16 27 H 0.38 19.28 5.92 -92.71 -0.55 18.74 16 28 H 0.07 2.60 8.14 -2.39 -0.02 2.59 16 29 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.41 6.67 6.99 -92.71 -0.65 6.02 16 31 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.13 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.06 1.21 8.10 -2.39 -0.02 1.19 16 34 H 0.06 1.18 8.10 -2.39 -0.02 1.16 16 35 H 0.10 0.64 8.14 -2.39 -0.02 0.63 16 36 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 37 H 0.11 2.07 7.00 -2.39 -0.02 2.06 16 38 H 0.05 1.71 6.42 -2.39 -0.02 1.70 16 39 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 40 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 41 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -70.74 344.61 2.96 -67.77 By element: Atomic # 1 Polarization: 31.26 SS G_CDS: -0.17 Total: 31.09 kcal Atomic # 6 Polarization: -16.69 SS G_CDS: 4.13 Total: -12.56 kcal Atomic # 7 Polarization: -107.15 SS G_CDS: -3.75 Total: -110.91 kcal Atomic # 8 Polarization: -19.30 SS G_CDS: -0.05 Total: -19.35 kcal Atomic # 9 Polarization: -4.63 SS G_CDS: 0.78 Total: -3.84 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.80 kcal Total: -70.74 2.96 -67.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203274030.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.045 kcal (2) G-P(sol) polarization free energy of solvation -70.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds