Wall clock time and date at job start Tue Mar 31 2020 06:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99878 * 2 1 4 4 H 1.48503 * 109.47067 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47222 * 239.99610 * 3 2 1 6 6 H 1.48497 * 109.47041 * 119.99483 * 3 2 1 7 7 C 1.37872 * 120.00296 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99771 * 18.11810 * 7 2 1 9 9 C 1.50696 * 120.00356 * 198.10999 * 7 2 1 10 10 H 1.08997 * 109.50624 * 305.59953 * 9 7 2 11 11 C 1.53117 * 109.50249 * 65.68115 * 9 7 2 12 12 C 1.53127 * 109.16084 * 177.59707 * 11 9 7 13 13 C 1.53036 * 109.27451 * 302.34079 * 12 11 9 14 14 N 1.46852 * 109.52129 * 59.18280 * 13 12 11 15 15 C 1.46903 * 110.99798 * 174.15695 * 14 13 12 16 16 C 1.50704 * 109.46793 * 66.04207 * 15 14 13 17 17 C 1.34229 * 126.50336 * 259.68322 * 16 15 14 18 18 N 1.36835 * 109.93131 * 179.87094 * 17 16 15 19 19 H 0.97004 * 125.06321 * 180.16512 * 18 17 16 20 20 C 1.37686 * 109.87021 * 0.41267 * 18 17 16 21 21 C 1.39129 * 133.50892 * 179.71699 * 20 18 17 22 22 C 1.37749 * 119.77843 * 180.02562 * 21 20 18 23 23 C 1.38839 * 120.66893 * 359.97438 * 22 21 20 24 24 C 1.36622 * 120.52414 * 359.97438 * 23 22 21 25 25 C 1.39635 * 119.76588 * 0.02562 * 24 23 22 26 26 C 1.46847 * 111.19886 * 298.25316 * 14 13 12 27 27 H 0.96999 * 119.99781 * 174.62091 * 1 2 3 28 28 H 1.09005 * 109.51768 * 297.49625 * 11 9 7 29 29 H 1.08990 * 109.52552 * 57.62429 * 11 9 7 30 30 H 1.09003 * 109.49923 * 62.28300 * 12 11 9 31 31 H 1.08996 * 109.50141 * 182.35968 * 12 11 9 32 32 H 1.09005 * 109.45929 * 179.19257 * 13 12 11 33 33 H 1.08995 * 109.46231 * 299.16505 * 13 12 11 34 34 H 1.08994 * 109.47044 * 186.04538 * 15 14 13 35 35 H 1.09000 * 109.47028 * 306.04774 * 15 14 13 36 36 H 1.07998 * 125.03865 * 359.97438 * 17 16 15 37 37 H 1.07994 * 120.11294 * 0.02562 * 21 20 18 38 38 H 1.07998 * 119.66693 * 180.02562 * 22 21 20 39 39 H 1.07998 * 119.73560 * 180.02562 * 23 22 21 40 40 H 1.07999 * 120.12230 * 180.02562 * 24 23 22 41 41 H 1.09000 * 109.45992 * 301.73115 * 26 14 13 42 42 H 1.08996 * 109.46126 * 181.75955 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 -0.0006 5 1 3.1030 1.6965 -1.2124 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 1.5047 -2.1063 -0.2899 9 6 3.4555 -1.2261 0.4062 10 1 4.0180 -0.5137 -0.1972 11 6 3.5809 -0.8539 1.8861 12 6 5.0508 -0.9473 2.3051 13 6 5.5643 -2.3632 2.0340 14 7 5.4235 -2.6711 0.6051 15 6 6.0330 -3.9685 0.2836 16 6 5.2612 -5.0688 0.9654 17 6 5.6019 -5.6977 2.1012 18 7 4.6576 -6.6366 2.4158 19 1 4.6849 -7.2157 3.1936 20 6 3.6656 -6.6409 1.4610 21 6 2.5002 -7.3823 1.2938 22 6 1.6904 -7.1476 0.2045 23 6 2.0245 -6.1768 -0.7302 24 6 3.1635 -5.4365 -0.5849 25 6 3.9990 -5.6578 0.5118 26 6 4.0154 -2.6340 0.1901 27 1 -0.4850 -0.8364 -0.0788 28 1 3.2232 0.1647 2.0370 29 1 2.9856 -1.5417 2.4865 30 1 5.6389 -0.2308 1.7315 31 1 5.1410 -0.7240 3.3681 32 1 6.6147 -2.4291 2.3179 33 1 4.9848 -3.0778 2.6184 34 1 6.0104 -4.1232 -0.7951 35 1 7.0662 -3.9805 0.6308 36 1 6.4891 -5.4920 2.6817 37 1 2.2315 -8.1394 2.0155 38 1 0.7860 -7.7239 0.0767 39 1 1.3783 -6.0050 -1.5783 40 1 3.4169 -4.6827 -1.3157 41 1 3.4431 -3.3473 0.7832 42 1 3.9407 -2.8965 -0.8651 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001204043111.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:26 Heat of formation + Delta-G solvation = 55.065304 kcal Electronic energy + Delta-G solvation = -22969.466403 eV Core-core repulsion = 19914.184445 eV Total energy + Delta-G solvation = -3055.281958 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.158 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.23523 -38.23553 -36.74221 -34.12746 -32.43721 -31.08351 -30.07524 -29.24597 -28.86420 -25.68398 -24.48602 -22.82089 -22.22280 -21.61211 -20.77780 -19.43752 -18.29630 -17.73890 -17.33816 -16.21116 -15.43309 -15.07860 -14.50631 -14.40430 -14.00028 -13.74150 -13.63455 -13.53943 -13.21216 -12.92067 -12.43782 -12.30156 -12.07054 -11.78623 -11.60717 -11.48631 -11.25374 -10.96147 -10.69134 -10.40043 -10.37197 -9.99961 -9.72488 -9.60162 -9.29503 -9.17342 -8.62769 -8.05675 -8.05339 -7.81256 -7.40830 -6.33595 -3.92684 1.30080 1.82543 2.78023 3.19912 3.47686 3.52794 3.70600 4.11942 4.59769 4.64922 4.84151 4.91776 5.13569 5.28401 5.34526 5.37782 5.45662 5.61892 5.69295 5.73609 5.82594 5.91787 6.00991 6.03875 6.12050 6.19935 6.29110 6.36105 6.46592 6.52884 6.64537 6.68201 6.79746 6.84340 6.88660 6.94565 6.98547 7.07542 7.32762 7.44205 7.58970 7.63035 7.77068 7.80229 8.35921 8.49912 9.03971 9.74945 11.06321 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.017366 B = 0.006242 C = 0.005057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.003153 B = 4484.834309 C = 5535.061176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.030 3.970 3 Si 1.047 2.953 4 H -0.290 1.290 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.593 4.593 8 H 0.053 0.947 9 C 0.026 3.974 10 H 0.025 0.975 11 C -0.122 4.122 12 C -0.120 4.120 13 C 0.063 3.937 14 N -0.532 5.532 15 C 0.124 3.876 16 C -0.192 4.192 17 C 0.048 3.952 18 N -0.599 5.599 19 H 0.411 0.589 20 C 0.092 3.908 21 C -0.139 4.139 22 C -0.097 4.097 23 C -0.147 4.147 24 C -0.057 4.057 25 C -0.093 4.093 26 C 0.076 3.924 27 H 0.265 0.735 28 H 0.058 0.942 29 H 0.045 0.955 30 H 0.061 0.939 31 H 0.049 0.951 32 H 0.057 0.943 33 H 0.028 0.972 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.164 0.836 37 H 0.114 0.886 38 H 0.121 0.879 39 H 0.121 0.879 40 H 0.125 0.875 41 H 0.036 0.964 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.387 -13.541 4.193 18.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.174 4.174 3 Si 0.876 3.124 4 H -0.216 1.216 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.631 4.631 8 H 0.071 0.929 9 C 0.006 3.994 10 H 0.043 0.957 11 C -0.160 4.160 12 C -0.158 4.158 13 C -0.065 4.065 14 N -0.254 5.254 15 C -0.004 4.004 16 C -0.201 4.201 17 C -0.078 4.078 18 N -0.202 5.202 19 H 0.247 0.753 20 C -0.015 4.015 21 C -0.160 4.160 22 C -0.117 4.117 23 C -0.167 4.167 24 C -0.076 4.076 25 C -0.098 4.098 26 C -0.050 4.050 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.064 0.936 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.046 0.954 34 H 0.096 0.904 35 H 0.091 0.909 36 H 0.182 0.818 37 H 0.132 0.868 38 H 0.139 0.861 39 H 0.139 0.861 40 H 0.143 0.857 41 H 0.054 0.946 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 11.467 -11.564 4.097 16.793 hybrid contribution -0.374 -2.670 0.934 2.853 sum 11.093 -14.234 5.031 18.734 Atomic orbital electron populations 1.70862 1.06994 1.30727 1.46082 1.25724 0.96096 1.02388 0.93230 0.84017 0.75242 0.75763 0.77351 1.21598 1.21001 1.20039 1.21960 0.95152 0.95999 1.50030 0.92851 1.19011 0.96434 0.92213 0.91733 0.95682 1.22083 0.92746 1.01340 0.99871 1.21674 0.98879 0.96003 0.99242 1.21953 0.98910 0.96878 0.88727 1.62468 1.19193 1.26781 1.16996 1.20609 0.96029 0.84427 0.99371 1.21227 0.97667 1.02655 0.98535 1.21563 0.94920 0.93062 0.98300 1.41669 1.20126 1.34976 1.23405 0.75271 1.18251 0.92185 0.99610 0.91405 1.19927 0.93959 1.01838 1.00228 1.20775 0.98708 0.98204 0.93982 1.20645 0.97833 0.97718 1.00469 1.20481 0.93335 0.97629 0.96133 1.19052 0.96424 0.97903 0.96376 1.22249 0.84754 0.99296 0.98729 0.92466 0.92305 0.93591 0.92040 0.93240 0.92424 0.95374 0.90439 0.90885 0.81840 0.86778 0.86079 0.86097 0.85721 0.94582 0.92313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.59 13.69 55.43 0.76 -27.83 16 2 C 0.03 0.88 5.34 -17.82 -0.10 0.78 16 3 Si 1.05 26.03 26.41 -169.99 -4.49 21.54 16 4 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 5 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.27 -6.32 5.57 56.52 0.31 -6.01 16 7 C -0.59 -16.99 8.82 -34.44 -0.30 -17.29 16 8 H 0.05 1.65 7.99 -52.48 -0.42 1.23 16 9 C 0.03 0.63 1.84 -91.69 -0.17 0.46 16 10 H 0.03 0.63 6.79 -51.93 -0.35 0.28 16 11 C -0.12 -2.79 4.97 -26.61 -0.13 -2.92 16 12 C -0.12 -2.21 6.09 -26.65 -0.16 -2.38 16 13 C 0.06 1.07 5.11 -3.83 -0.02 1.05 16 14 N -0.53 -9.54 4.86 -236.11 -1.15 -10.69 16 15 C 0.12 1.84 5.91 -4.97 -0.03 1.81 16 16 C -0.19 -2.87 4.18 -102.71 -0.43 -3.30 16 17 C 0.05 0.59 11.26 -16.73 -0.19 0.41 16 18 N -0.60 -7.16 6.07 -10.65 -0.06 -7.22 16 19 H 0.41 3.48 8.96 -40.82 -0.37 3.12 16 20 C 0.09 1.37 7.28 -83.99 -0.61 0.76 16 21 C -0.14 -1.89 10.08 -39.43 -0.40 -2.29 16 22 C -0.10 -1.35 10.01 -39.54 -0.40 -1.74 16 23 C -0.15 -2.27 9.97 -39.94 -0.40 -2.67 16 24 C -0.06 -0.97 8.56 -39.64 -0.34 -1.31 16 25 C -0.09 -1.53 5.01 -105.14 -0.53 -2.06 16 26 C 0.08 1.63 3.17 -3.83 -0.01 1.62 16 27 H 0.27 8.31 8.73 -40.82 -0.36 7.96 16 28 H 0.06 1.40 4.86 -51.93 -0.25 1.15 16 29 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.06 0.82 8.06 -51.93 -0.42 0.40 16 33 H 0.03 0.50 7.12 -51.93 -0.37 0.13 16 34 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.07 0.90 8.06 -51.93 -0.42 0.48 16 36 H 0.16 1.48 8.06 -52.49 -0.42 1.06 16 37 H 0.11 1.24 8.06 -52.49 -0.42 0.81 16 38 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 39 H 0.12 1.68 8.06 -52.49 -0.42 1.25 16 40 H 0.12 2.14 6.38 -52.49 -0.33 1.80 16 41 H 0.04 0.83 5.68 -51.93 -0.30 0.53 16 42 H 0.06 1.27 6.57 -51.93 -0.34 0.93 16 LS Contribution 322.43 15.07 4.86 4.86 Total: -1.00 -32.64 322.43 -10.48 -43.12 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -6.19 Total: 5.30 kcal Atomic # 6 Polarization: -24.87 SS G_CDS: -4.21 Total: -29.09 kcal Atomic # 7 Polarization: -45.28 SS G_CDS: -0.45 Total: -45.74 kcal Atomic # 14 Polarization: 26.03 SS G_CDS: -4.49 Total: 21.54 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.64 -10.48 -43.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204043111.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.189 kcal (2) G-P(sol) polarization free energy of solvation -32.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds