Wall clock time and date at job start Tue Mar 31 2020 06:44:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99878 * 2 1 4 4 H 1.48503 * 109.47067 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47222 * 239.99610 * 3 2 1 6 6 H 1.48497 * 109.47041 * 119.99483 * 3 2 1 7 7 C 1.37872 * 120.00296 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99771 * 18.11810 * 7 2 1 9 9 C 1.50696 * 120.00356 * 198.10999 * 7 2 1 10 10 H 1.08997 * 109.50624 * 305.59953 * 9 7 2 11 11 C 1.53117 * 109.50249 * 65.68115 * 9 7 2 12 12 C 1.53127 * 109.16084 * 177.59707 * 11 9 7 13 13 C 1.53036 * 109.27451 * 302.34079 * 12 11 9 14 14 N 1.46852 * 109.52129 * 59.18280 * 13 12 11 15 15 C 1.46903 * 110.99798 * 174.15695 * 14 13 12 16 16 C 1.50704 * 109.46793 * 66.04207 * 15 14 13 17 17 C 1.34229 * 126.50336 * 259.68322 * 16 15 14 18 18 N 1.36835 * 109.93131 * 179.87094 * 17 16 15 19 19 H 0.97004 * 125.06321 * 180.16512 * 18 17 16 20 20 C 1.37686 * 109.87021 * 0.41267 * 18 17 16 21 21 C 1.39129 * 133.50892 * 179.71699 * 20 18 17 22 22 C 1.37749 * 119.77843 * 180.02562 * 21 20 18 23 23 C 1.38839 * 120.66893 * 359.97438 * 22 21 20 24 24 C 1.36622 * 120.52414 * 359.97438 * 23 22 21 25 25 C 1.39635 * 119.76588 * 0.02562 * 24 23 22 26 26 C 1.46847 * 111.19886 * 298.25316 * 14 13 12 27 27 H 0.96999 * 119.99781 * 174.62091 * 1 2 3 28 28 H 1.09005 * 109.51768 * 297.49625 * 11 9 7 29 29 H 1.08990 * 109.52552 * 57.62429 * 11 9 7 30 30 H 1.09003 * 109.49923 * 62.28300 * 12 11 9 31 31 H 1.08996 * 109.50141 * 182.35968 * 12 11 9 32 32 H 1.09005 * 109.45929 * 179.19257 * 13 12 11 33 33 H 1.08995 * 109.46231 * 299.16505 * 13 12 11 34 34 H 1.08994 * 109.47044 * 186.04538 * 15 14 13 35 35 H 1.09000 * 109.47028 * 306.04774 * 15 14 13 36 36 H 1.07998 * 125.03865 * 359.97438 * 17 16 15 37 37 H 1.07994 * 120.11294 * 0.02562 * 21 20 18 38 38 H 1.07998 * 119.66693 * 180.02562 * 22 21 20 39 39 H 1.07998 * 119.73560 * 180.02562 * 23 22 21 40 40 H 1.07999 * 120.12230 * 180.02562 * 24 23 22 41 41 H 1.09000 * 109.45992 * 301.73115 * 26 14 13 42 42 H 1.08996 * 109.46126 * 181.75955 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 -0.0006 5 1 3.1030 1.6965 -1.2124 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 1.5047 -2.1063 -0.2899 9 6 3.4555 -1.2261 0.4062 10 1 4.0180 -0.5137 -0.1972 11 6 3.5809 -0.8539 1.8861 12 6 5.0508 -0.9473 2.3051 13 6 5.5643 -2.3632 2.0340 14 7 5.4235 -2.6711 0.6051 15 6 6.0330 -3.9685 0.2836 16 6 5.2612 -5.0688 0.9654 17 6 5.6019 -5.6977 2.1012 18 7 4.6576 -6.6366 2.4158 19 1 4.6849 -7.2157 3.1936 20 6 3.6656 -6.6409 1.4610 21 6 2.5002 -7.3823 1.2938 22 6 1.6904 -7.1476 0.2045 23 6 2.0245 -6.1768 -0.7302 24 6 3.1635 -5.4365 -0.5849 25 6 3.9990 -5.6578 0.5118 26 6 4.0154 -2.6340 0.1901 27 1 -0.4850 -0.8364 -0.0788 28 1 3.2232 0.1647 2.0370 29 1 2.9856 -1.5417 2.4865 30 1 5.6389 -0.2308 1.7315 31 1 5.1410 -0.7240 3.3681 32 1 6.6147 -2.4291 2.3179 33 1 4.9848 -3.0778 2.6184 34 1 6.0104 -4.1232 -0.7951 35 1 7.0662 -3.9805 0.6308 36 1 6.4891 -5.4920 2.6817 37 1 2.2315 -8.1394 2.0155 38 1 0.7860 -7.7239 0.0767 39 1 1.3783 -6.0050 -1.5783 40 1 3.4169 -4.6827 -1.3157 41 1 3.4431 -3.3473 0.7832 42 1 3.9407 -2.8965 -0.8651 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001204043111.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:25 Heat of formation + Delta-G solvation = 33.553121 kcal Electronic energy + Delta-G solvation = -22970.399241 eV Core-core repulsion = 19914.184445 eV Total energy + Delta-G solvation = -3056.214796 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.158 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.31143 -39.74747 -37.84627 -35.84014 -34.25612 -32.47168 -31.75850 -30.38896 -30.05108 -26.97962 -26.47570 -24.06023 -23.56977 -22.90294 -22.34866 -20.83721 -19.79196 -19.58955 -18.76994 -17.28151 -16.76776 -16.34479 -16.05230 -15.69626 -15.51998 -15.18019 -15.05017 -14.74826 -14.73437 -14.37385 -14.19717 -13.77250 -13.57720 -13.26803 -12.98000 -12.72313 -12.64348 -12.47416 -12.19864 -12.11166 -11.76190 -11.65772 -11.57497 -11.38165 -11.01696 -10.65964 -10.51756 -10.29727 -9.23214 -9.13309 -8.72561 -8.53431 -6.31616 0.18946 0.65988 1.45632 1.54278 1.73026 1.74049 2.25742 2.50543 2.94284 3.09265 3.28912 3.79381 3.89404 4.08488 4.14773 4.21045 4.22929 4.32386 4.35928 4.41561 4.57369 4.60382 4.74223 4.79568 4.87960 4.90218 4.92910 4.94886 5.02125 5.07246 5.13719 5.19470 5.26635 5.35431 5.52078 5.56256 5.67043 5.73878 5.79705 5.82866 5.99032 6.07489 6.21928 6.35236 6.44554 6.63066 6.74669 7.45264 8.66334 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.017366 B = 0.006242 C = 0.005057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.003153 B = 4484.834309 C = 5535.061176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.022 4.022 3 Si 1.086 2.914 4 H -0.291 1.291 5 H -0.266 1.266 6 H -0.241 1.241 7 C -0.596 4.596 8 H 0.009 0.991 9 C 0.022 3.978 10 H 0.023 0.977 11 C -0.119 4.119 12 C -0.115 4.115 13 C 0.066 3.934 14 N -0.536 5.536 15 C 0.128 3.872 16 C -0.230 4.230 17 C 0.077 3.923 18 N -0.584 5.584 19 H 0.431 0.569 20 C 0.074 3.926 21 C -0.134 4.134 22 C -0.110 4.110 23 C -0.163 4.163 24 C -0.091 4.091 25 C -0.119 4.119 26 C 0.100 3.900 27 H 0.248 0.752 28 H 0.047 0.953 29 H 0.023 0.977 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.102 0.898 33 H 0.020 0.980 34 H 0.065 0.935 35 H 0.110 0.890 36 H 0.209 0.791 37 H 0.147 0.853 38 H 0.148 0.852 39 H 0.122 0.878 40 H 0.102 0.898 41 H 0.013 0.987 42 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.895 -13.985 6.754 21.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.219 4.219 3 Si 0.907 3.093 4 H -0.217 1.217 5 H -0.192 1.192 6 H -0.165 1.165 7 C -0.634 4.634 8 H 0.027 0.973 9 C 0.002 3.998 10 H 0.041 0.959 11 C -0.157 4.157 12 C -0.153 4.153 13 C -0.062 4.062 14 N -0.258 5.258 15 C 0.000 4.000 16 C -0.238 4.238 17 C -0.051 4.051 18 N -0.188 5.188 19 H 0.270 0.730 20 C -0.034 4.034 21 C -0.154 4.154 22 C -0.129 4.129 23 C -0.183 4.183 24 C -0.109 4.109 25 C -0.123 4.123 26 C -0.028 4.028 27 H 0.057 0.943 28 H 0.065 0.935 29 H 0.042 0.958 30 H 0.087 0.913 31 H 0.097 0.903 32 H 0.120 0.880 33 H 0.038 0.962 34 H 0.084 0.916 35 H 0.129 0.871 36 H 0.225 0.775 37 H 0.165 0.835 38 H 0.166 0.834 39 H 0.140 0.860 40 H 0.120 0.880 41 H 0.032 0.968 42 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 14.994 -12.063 6.681 20.371 hybrid contribution -1.502 -2.673 0.125 3.069 sum 13.492 -14.736 6.806 21.107 Atomic orbital electron populations 1.70998 1.08257 1.29666 1.48990 1.27216 0.96026 1.06293 0.92320 0.83560 0.74799 0.71426 0.79474 1.21736 1.19156 1.16519 1.22205 0.97722 0.94296 1.49220 0.97265 1.18986 0.93411 0.94227 0.93127 0.95853 1.21927 0.96214 0.99793 0.97750 1.21659 0.95016 0.97532 1.01103 1.22027 1.01244 0.95394 0.87542 1.62404 1.16038 1.29255 1.18141 1.20630 0.97407 0.82858 0.99072 1.21269 0.97815 1.04390 1.00352 1.22171 0.95150 0.90901 0.96894 1.41699 1.19036 1.34869 1.23242 0.72967 1.18476 0.93278 0.99636 0.91966 1.20335 0.93117 1.01711 1.00258 1.21092 0.99942 0.98040 0.93790 1.20866 0.97633 0.98404 1.01347 1.20473 0.94956 0.98433 0.97060 1.19388 0.97413 0.98985 0.96562 1.21757 0.87168 0.96457 0.97420 0.94317 0.93468 0.95826 0.91274 0.90346 0.88029 0.96186 0.91615 0.87142 0.77450 0.83506 0.83416 0.85997 0.87976 0.96843 0.94138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -61.82 13.69 21.45 0.29 -61.53 16 2 C -0.02 -1.31 5.34 84.65 0.45 -0.86 16 3 Si 1.09 52.49 26.41 68.60 1.81 54.30 16 4 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 5 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 6 H -0.24 -10.33 5.57 99.48 0.55 -9.77 16 7 C -0.60 -35.99 8.82 25.60 0.23 -35.77 16 8 H 0.01 0.61 7.99 -2.91 -0.02 0.58 16 9 C 0.02 1.09 1.84 -11.49 -0.02 1.07 16 10 H 0.02 1.17 6.79 -2.39 -0.02 1.16 16 11 C -0.12 -5.31 4.97 30.68 0.15 -5.16 16 12 C -0.12 -3.84 6.09 30.65 0.19 -3.65 16 13 C 0.07 1.95 5.11 86.32 0.44 2.39 16 14 N -0.54 -18.24 4.86 -900.91 -4.38 -22.61 16 15 C 0.13 3.52 5.91 85.56 0.51 4.03 16 16 C -0.23 -6.47 4.18 -18.63 -0.08 -6.55 16 17 C 0.08 1.58 11.26 83.00 0.93 2.52 16 18 N -0.58 -12.05 6.07 -187.61 -1.14 -13.19 16 19 H 0.43 5.52 8.96 -92.71 -0.83 4.69 16 20 C 0.07 2.10 7.28 39.03 0.28 2.39 16 21 C -0.13 -3.48 10.08 22.37 0.23 -3.25 16 22 C -0.11 -3.06 10.01 22.30 0.22 -2.84 16 23 C -0.16 -5.45 9.97 22.04 0.22 -5.23 16 24 C -0.09 -3.34 8.56 22.23 0.19 -3.15 16 25 C -0.12 -3.99 5.01 -20.20 -0.10 -4.09 16 26 C 0.10 4.38 3.17 86.33 0.27 4.66 16 27 H 0.25 16.60 8.73 -92.71 -0.81 15.79 16 28 H 0.05 2.18 4.86 -2.38 -0.01 2.17 16 29 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 31 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 32 H 0.10 2.21 8.06 -2.38 -0.02 2.19 16 33 H 0.02 0.64 7.12 -2.39 -0.02 0.62 16 34 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.11 2.21 8.06 -2.39 -0.02 2.19 16 36 H 0.21 2.38 8.06 -2.91 -0.02 2.36 16 37 H 0.15 2.75 8.06 -2.91 -0.02 2.73 16 38 H 0.15 3.18 8.06 -2.91 -0.02 3.16 16 39 H 0.12 3.80 8.06 -2.91 -0.02 3.77 16 40 H 0.10 4.02 6.38 -2.91 -0.02 4.00 16 41 H 0.01 0.65 5.68 -2.39 -0.01 0.63 16 42 H 0.04 1.88 6.57 -2.39 -0.02 1.86 16 Total: -1.00 -76.50 322.43 0.71 -75.79 By element: Atomic # 1 Polarization: 20.75 SS G_CDS: 0.00 Total: 20.75 kcal Atomic # 6 Polarization: -57.62 SS G_CDS: 4.11 Total: -53.50 kcal Atomic # 7 Polarization: -92.12 SS G_CDS: -5.22 Total: -97.34 kcal Atomic # 14 Polarization: 52.49 SS G_CDS: 1.81 Total: 54.30 kcal Total: -76.50 0.71 -75.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204043111.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.347 kcal (2) G-P(sol) polarization free energy of solvation -76.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds