Wall clock time and date at job start Tue Mar 31 2020 06:44:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86806 * 119.99908 * 2 1 4 4 H 1.48502 * 109.46899 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.46835 * 299.99644 * 3 2 1 6 6 H 1.48496 * 109.46992 * 59.99627 * 3 2 1 7 7 C 1.37876 * 120.00516 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00673 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99713 * 0.02562 * 7 2 1 10 10 H 1.09011 * 109.53762 * 59.89834 * 9 7 2 11 11 C 1.53123 * 109.50632 * 299.80150 * 9 7 2 12 12 C 1.53114 * 109.16198 * 182.40528 * 11 9 7 13 13 C 1.53032 * 109.28141 * 57.65126 * 12 11 9 14 14 N 1.46844 * 109.52527 * 300.82107 * 13 12 11 15 15 C 1.46904 * 111.00328 * 185.83771 * 14 13 12 16 16 C 1.50699 * 109.46896 * 45.78858 * 15 14 13 17 17 C 1.34239 * 126.50375 * 260.02459 * 16 15 14 18 18 N 1.36824 * 109.93364 * 180.02562 * 17 16 15 19 19 H 0.96991 * 125.06829 * 180.02562 * 18 17 16 20 20 C 1.37686 * 109.87156 * 0.02562 * 18 17 16 21 21 C 1.39131 * 133.50777 * 180.02562 * 20 18 17 22 22 C 1.37745 * 119.78049 * 179.97438 * 21 20 18 23 23 C 1.38831 * 120.66724 * 359.97438 * 22 21 20 24 24 C 1.36624 * 120.52649 * 0.02562 * 23 22 21 25 25 C 1.39632 * 119.76588 * 359.69921 * 24 23 22 26 26 C 1.46846 * 111.19783 * 61.73901 * 14 13 12 27 27 H 0.97000 * 120.00653 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.52219 * 62.49698 * 11 9 7 29 29 H 1.09001 * 109.57074 * 302.34474 * 11 9 7 30 30 H 1.09000 * 109.50493 * 297.71120 * 12 11 9 31 31 H 1.08996 * 109.50191 * 177.59676 * 12 11 9 32 32 H 1.09000 * 109.46311 * 180.80335 * 13 12 11 33 33 H 1.08998 * 109.46309 * 60.83577 * 13 12 11 34 34 H 1.09003 * 109.47099 * 165.79287 * 15 14 13 35 35 H 1.09003 * 109.46551 * 285.79090 * 15 14 13 36 36 H 1.08004 * 125.03270 * 0.02562 * 17 16 15 37 37 H 1.07999 * 120.10491 * 359.97438 * 21 20 18 38 38 H 1.08003 * 119.66512 * 180.02562 * 22 21 20 39 39 H 1.07996 * 119.73286 * 180.02562 * 23 22 21 40 40 H 1.08003 * 120.11861 * 180.02562 * 24 23 22 41 41 H 1.09008 * 109.46456 * 58.27625 * 26 14 13 42 42 H 1.09003 * 109.46474 * 178.24130 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8902 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6230 -2.5574 -0.8885 11 6 0.3738 -2.5830 1.2527 12 6 -0.3418 -3.9365 1.2753 13 6 0.6982 -5.0585 1.2388 14 7 1.5113 -4.9348 0.0223 15 6 2.4285 -6.0739 -0.1161 16 6 1.6825 -7.3552 0.1542 17 6 1.6908 -8.0580 1.2978 18 7 0.8961 -9.1646 1.1711 19 1 0.7446 -9.8244 1.8656 20 6 0.3436 -9.2020 -0.0895 21 6 -0.5180 -10.0857 -0.7318 22 6 -0.9008 -9.8440 -2.0327 23 6 -0.4360 -8.7257 -2.7115 24 6 0.4107 -7.8450 -2.1000 25 6 0.8071 -8.0674 -0.7798 26 6 2.2449 -3.6629 0.0010 27 1 -0.4851 0.8400 -0.0004 28 1 -0.3642 -1.7810 1.2347 29 1 0.9964 -2.4852 2.1420 30 1 -0.9949 -4.0174 0.4064 31 1 -0.9349 -4.0194 2.1860 32 1 0.1915 -6.0236 1.2404 33 1 1.3423 -4.9853 2.1151 34 1 2.8317 -6.0948 -1.1286 35 1 3.2454 -5.9715 0.5983 36 1 2.2429 -7.7897 2.1865 37 1 -0.8853 -10.9583 -0.2121 38 1 -1.5700 -10.5310 -2.5294 39 1 -0.7462 -8.5507 -3.7311 40 1 0.7679 -6.9769 -2.6342 41 1 2.8818 -3.5961 0.8832 42 1 2.8616 -3.6143 -0.8964 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001204043112.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:29 Heat of formation + Delta-G solvation = 53.877259 kcal Electronic energy + Delta-G solvation = -22147.630024 eV Core-core repulsion = 19092.296548 eV Total energy + Delta-G solvation = -3055.333475 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.158 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.24204 -38.07334 -36.79381 -34.06507 -32.29092 -31.13288 -29.84893 -29.31266 -28.76840 -25.55672 -24.82902 -22.78529 -21.88464 -21.70043 -21.30144 -19.11266 -18.49203 -17.67726 -16.35225 -16.21698 -15.42469 -15.12861 -14.60593 -14.21784 -14.07474 -13.89666 -13.75606 -13.46437 -13.08188 -12.59643 -12.55782 -12.25967 -11.88986 -11.68362 -11.58844 -11.45395 -11.12744 -10.92487 -10.72323 -10.60657 -10.56104 -10.04614 -9.77034 -9.46732 -9.38280 -8.95268 -8.62058 -8.24739 -8.14565 -7.66857 -7.39526 -5.92030 -3.98008 1.21169 1.71520 2.71860 3.14019 3.33120 3.41120 3.44781 4.01454 4.46890 4.77410 4.80769 4.88964 5.04837 5.19843 5.33800 5.38009 5.42678 5.63950 5.79603 5.80580 5.90260 5.94039 6.01143 6.09510 6.21991 6.28249 6.37628 6.49380 6.56564 6.60898 6.70493 6.78759 6.83872 6.84536 6.89633 7.06718 7.24311 7.31270 7.48711 7.54332 7.79858 7.83293 7.94760 8.16380 8.24947 8.55078 9.06637 9.66041 11.13936 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.029552 B = 0.003739 C = 0.003626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.249204 B = 7487.249945 C = 7719.454187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.062 3.938 3 Si 0.889 3.111 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.513 4.513 8 H 0.054 0.946 9 C 0.055 3.945 10 H 0.034 0.966 11 C -0.109 4.109 12 C -0.117 4.117 13 C 0.066 3.934 14 N -0.531 5.531 15 C 0.125 3.875 16 C -0.148 4.148 17 C 0.044 3.956 18 N -0.597 5.597 19 H 0.412 0.588 20 C 0.092 3.908 21 C -0.138 4.138 22 C -0.100 4.100 23 C -0.154 4.154 24 C -0.054 4.054 25 C -0.089 4.089 26 C 0.068 3.932 27 H 0.258 0.742 28 H 0.089 0.911 29 H 0.028 0.972 30 H 0.059 0.941 31 H 0.042 0.958 32 H 0.062 0.938 33 H 0.016 0.984 34 H 0.077 0.923 35 H 0.032 0.968 36 H 0.165 0.835 37 H 0.114 0.886 38 H 0.120 0.880 39 H 0.120 0.880 40 H 0.126 0.874 41 H 0.017 0.983 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.392 -19.791 1.022 19.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.139 4.139 3 Si 0.717 3.283 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.212 1.212 7 C -0.552 4.552 8 H 0.072 0.928 9 C 0.036 3.964 10 H 0.052 0.948 11 C -0.147 4.147 12 C -0.155 4.155 13 C -0.062 4.062 14 N -0.256 5.256 15 C -0.003 4.003 16 C -0.156 4.156 17 C -0.083 4.083 18 N -0.201 5.201 19 H 0.249 0.751 20 C -0.015 4.015 21 C -0.159 4.159 22 C -0.120 4.120 23 C -0.174 4.174 24 C -0.073 4.073 25 C -0.094 4.094 26 C -0.059 4.059 27 H 0.068 0.932 28 H 0.107 0.893 29 H 0.047 0.953 30 H 0.078 0.922 31 H 0.061 0.939 32 H 0.080 0.920 33 H 0.034 0.966 34 H 0.095 0.905 35 H 0.050 0.950 36 H 0.182 0.818 37 H 0.132 0.868 38 H 0.138 0.862 39 H 0.138 0.862 40 H 0.144 0.856 41 H 0.036 0.964 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.056 -19.721 0.733 19.735 hybrid contribution 0.897 0.618 1.206 1.625 sum 0.842 -19.104 1.939 19.220 Atomic orbital electron populations 1.69906 1.05828 1.26114 1.50863 1.24933 0.94799 0.98898 0.95232 0.86593 0.80144 0.84084 0.77492 1.19873 1.21068 1.21175 1.21202 0.92842 0.90715 1.50405 0.92823 1.18660 0.92637 0.90248 0.94836 0.94764 1.21637 0.99963 0.94741 0.98399 1.21669 0.97328 0.96594 0.99911 1.22014 0.95444 0.98852 0.89855 1.62095 1.23834 1.01656 1.37988 1.20405 0.92490 0.86524 1.00865 1.20248 1.03664 0.98411 0.93241 1.21594 0.98319 0.88804 0.99549 1.41650 1.42473 1.23715 1.12213 0.75134 1.18281 0.99371 0.97964 0.85855 1.19933 1.00821 0.99568 0.95592 1.20756 0.99809 0.97742 0.93664 1.20625 1.00510 0.95856 1.00360 1.20396 0.95774 0.98370 0.92722 1.19032 1.00671 0.95113 0.94574 1.22316 0.96392 0.88574 0.98647 0.93180 0.89293 0.95332 0.92234 0.93947 0.91985 0.96564 0.90507 0.94982 0.81751 0.86759 0.86172 0.86230 0.85611 0.96440 0.92312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.66 11.36 55.43 0.63 -25.03 16 2 C 0.06 1.74 5.31 -17.82 -0.09 1.65 16 3 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 4 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 6 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.51 -14.20 8.56 -34.44 -0.29 -14.49 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 9 C 0.05 1.40 2.26 -91.69 -0.21 1.19 16 10 H 0.03 0.97 8.14 -51.92 -0.42 0.55 16 11 C -0.11 -2.65 5.03 -26.61 -0.13 -2.79 16 12 C -0.12 -2.41 6.09 -26.66 -0.16 -2.58 16 13 C 0.07 1.23 4.94 -3.84 -0.02 1.21 16 14 N -0.53 -10.09 4.80 -236.11 -1.13 -11.22 16 15 C 0.13 1.97 5.81 -4.97 -0.03 1.94 16 16 C -0.15 -2.14 4.04 -102.71 -0.42 -2.56 16 17 C 0.04 0.52 10.88 -16.73 -0.18 0.33 16 18 N -0.60 -6.37 6.07 -10.65 -0.06 -6.43 16 19 H 0.41 2.98 8.96 -40.82 -0.37 2.62 16 20 C 0.09 1.19 7.28 -83.99 -0.61 0.58 16 21 C -0.14 -1.56 10.08 -39.43 -0.40 -1.96 16 22 C -0.10 -1.11 10.01 -39.54 -0.40 -1.50 16 23 C -0.15 -1.88 9.97 -39.95 -0.40 -2.27 16 24 C -0.05 -0.77 10.05 -39.64 -0.40 -1.17 16 25 C -0.09 -1.32 6.35 -105.14 -0.67 -1.98 16 26 C 0.07 1.46 4.65 -3.84 -0.02 1.44 16 27 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 28 H 0.09 2.41 6.16 -51.93 -0.32 2.09 16 29 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 31 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.06 1.09 6.03 -51.93 -0.31 0.78 16 33 H 0.02 0.30 8.14 -51.93 -0.42 -0.13 16 34 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.03 0.48 8.08 -51.93 -0.42 0.06 16 36 H 0.17 1.55 8.06 -52.48 -0.42 1.12 16 37 H 0.11 1.00 8.06 -52.49 -0.42 0.57 16 38 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 39 H 0.12 1.21 8.06 -52.49 -0.42 0.78 16 40 H 0.13 1.78 8.06 -52.48 -0.42 1.36 16 41 H 0.02 0.38 8.14 -51.92 -0.42 -0.05 16 42 H 0.06 1.24 8.12 -51.93 -0.42 0.82 16 LS Contribution 335.09 15.07 5.05 5.05 Total: -1.00 -30.50 335.09 -11.42 -41.92 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -6.46 Total: 2.28 kcal Atomic # 6 Polarization: -18.53 SS G_CDS: -4.43 Total: -22.96 kcal Atomic # 7 Polarization: -42.12 SS G_CDS: -0.57 Total: -42.69 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.50 -11.42 -41.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204043112.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.797 kcal (2) G-P(sol) polarization free energy of solvation -30.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds