Wall clock time and date at job start Tue Mar 31 2020 06:44:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86806 * 119.99908 * 2 1 4 4 H 1.48502 * 109.46899 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.46835 * 299.99644 * 3 2 1 6 6 H 1.48496 * 109.46992 * 59.99627 * 3 2 1 7 7 C 1.37876 * 120.00516 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00673 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99713 * 0.02562 * 7 2 1 10 10 H 1.09011 * 109.53762 * 59.89834 * 9 7 2 11 11 C 1.53123 * 109.50632 * 299.80150 * 9 7 2 12 12 C 1.53114 * 109.16198 * 182.40528 * 11 9 7 13 13 C 1.53032 * 109.28141 * 57.65126 * 12 11 9 14 14 N 1.46844 * 109.52527 * 300.82107 * 13 12 11 15 15 C 1.46904 * 111.00328 * 185.83771 * 14 13 12 16 16 C 1.50699 * 109.46896 * 45.78858 * 15 14 13 17 17 C 1.34239 * 126.50375 * 260.02459 * 16 15 14 18 18 N 1.36824 * 109.93364 * 180.02562 * 17 16 15 19 19 H 0.96991 * 125.06829 * 180.02562 * 18 17 16 20 20 C 1.37686 * 109.87156 * 0.02562 * 18 17 16 21 21 C 1.39131 * 133.50777 * 180.02562 * 20 18 17 22 22 C 1.37745 * 119.78049 * 179.97438 * 21 20 18 23 23 C 1.38831 * 120.66724 * 359.97438 * 22 21 20 24 24 C 1.36624 * 120.52649 * 0.02562 * 23 22 21 25 25 C 1.39632 * 119.76588 * 359.69921 * 24 23 22 26 26 C 1.46846 * 111.19783 * 61.73901 * 14 13 12 27 27 H 0.97000 * 120.00653 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.52219 * 62.49698 * 11 9 7 29 29 H 1.09001 * 109.57074 * 302.34474 * 11 9 7 30 30 H 1.09000 * 109.50493 * 297.71120 * 12 11 9 31 31 H 1.08996 * 109.50191 * 177.59676 * 12 11 9 32 32 H 1.09000 * 109.46311 * 180.80335 * 13 12 11 33 33 H 1.08998 * 109.46309 * 60.83577 * 13 12 11 34 34 H 1.09003 * 109.47099 * 165.79287 * 15 14 13 35 35 H 1.09003 * 109.46551 * 285.79090 * 15 14 13 36 36 H 1.08004 * 125.03270 * 0.02562 * 17 16 15 37 37 H 1.07999 * 120.10491 * 359.97438 * 21 20 18 38 38 H 1.08003 * 119.66512 * 180.02562 * 22 21 20 39 39 H 1.07996 * 119.73286 * 180.02562 * 23 22 21 40 40 H 1.08003 * 120.11861 * 180.02562 * 24 23 22 41 41 H 1.09008 * 109.46456 * 58.27625 * 26 14 13 42 42 H 1.09003 * 109.46474 * 178.24130 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8902 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6230 -2.5574 -0.8885 11 6 0.3738 -2.5830 1.2527 12 6 -0.3418 -3.9365 1.2753 13 6 0.6982 -5.0585 1.2388 14 7 1.5113 -4.9348 0.0223 15 6 2.4285 -6.0739 -0.1161 16 6 1.6825 -7.3552 0.1542 17 6 1.6908 -8.0580 1.2978 18 7 0.8961 -9.1646 1.1711 19 1 0.7446 -9.8244 1.8656 20 6 0.3436 -9.2020 -0.0895 21 6 -0.5180 -10.0857 -0.7318 22 6 -0.9008 -9.8440 -2.0327 23 6 -0.4360 -8.7257 -2.7115 24 6 0.4107 -7.8450 -2.1000 25 6 0.8071 -8.0674 -0.7798 26 6 2.2449 -3.6629 0.0010 27 1 -0.4851 0.8400 -0.0004 28 1 -0.3642 -1.7810 1.2347 29 1 0.9964 -2.4852 2.1420 30 1 -0.9949 -4.0174 0.4064 31 1 -0.9349 -4.0194 2.1860 32 1 0.1915 -6.0236 1.2404 33 1 1.3423 -4.9853 2.1151 34 1 2.8317 -6.0948 -1.1286 35 1 3.2454 -5.9715 0.5983 36 1 2.2429 -7.7897 2.1865 37 1 -0.8853 -10.9583 -0.2121 38 1 -1.5700 -10.5310 -2.5294 39 1 -0.7462 -8.5507 -3.7311 40 1 0.7679 -6.9769 -2.6342 41 1 2.8818 -3.5961 0.8832 42 1 2.8616 -3.6143 -0.8964 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001204043112.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:29 Heat of formation + Delta-G solvation = 36.479254 kcal Electronic energy + Delta-G solvation = -22148.384458 eV Core-core repulsion = 19092.296548 eV Total energy + Delta-G solvation = -3056.087909 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.158 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.17725 -39.67767 -37.72280 -35.78714 -33.94888 -32.44058 -31.61386 -30.29476 -29.86384 -26.93053 -26.79854 -23.73037 -23.49778 -23.08403 -22.56641 -20.31721 -20.16116 -18.66673 -18.31337 -17.19756 -16.78314 -16.38311 -16.29072 -15.56876 -15.35433 -15.12384 -14.89380 -14.75025 -14.53497 -14.36627 -14.01136 -13.72928 -13.27868 -13.12834 -12.86417 -12.79079 -12.58162 -12.46295 -12.42247 -12.23611 -11.82474 -11.71866 -11.61951 -11.34828 -10.84392 -10.64811 -10.44949 -10.34825 -9.07493 -9.02879 -8.47180 -8.05763 -6.20180 0.28648 0.77941 1.41554 1.42949 1.54627 1.73841 2.31255 2.44841 3.04680 3.21074 3.35523 3.89818 3.95100 4.11528 4.26881 4.27626 4.30720 4.44391 4.44940 4.51832 4.63872 4.72116 4.76039 4.81007 4.87710 4.92836 4.97259 5.02453 5.09504 5.16778 5.22505 5.32315 5.41099 5.54380 5.64680 5.65697 5.77493 5.83601 5.90386 6.00671 6.16667 6.26468 6.31928 6.45334 6.51787 6.79201 6.93321 7.47785 8.99183 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.029552 B = 0.003739 C = 0.003626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.249204 B = 7487.249945 C = 7719.454187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.013 3.987 3 Si 0.955 3.045 4 H -0.266 1.266 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.534 4.534 8 H 0.053 0.947 9 C 0.053 3.947 10 H -0.008 1.008 11 C -0.101 4.101 12 C -0.111 4.111 13 C 0.078 3.922 14 N -0.544 5.544 15 C 0.132 3.868 16 C -0.187 4.187 17 C 0.067 3.933 18 N -0.582 5.582 19 H 0.431 0.569 20 C 0.078 3.922 21 C -0.134 4.134 22 C -0.106 4.106 23 C -0.156 4.156 24 C -0.087 4.087 25 C -0.117 4.117 26 C 0.082 3.918 27 H 0.259 0.741 28 H 0.055 0.945 29 H 0.025 0.975 30 H 0.041 0.959 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.027 0.973 34 H 0.069 0.931 35 H 0.044 0.956 36 H 0.195 0.805 37 H 0.145 0.855 38 H 0.151 0.849 39 H 0.134 0.866 40 H 0.108 0.892 41 H 0.019 0.981 42 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.701 -21.933 2.378 22.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.186 4.186 3 Si 0.781 3.219 4 H -0.190 1.190 5 H -0.207 1.207 6 H -0.206 1.206 7 C -0.572 4.572 8 H 0.071 0.929 9 C 0.034 3.966 10 H 0.011 0.989 11 C -0.139 4.139 12 C -0.149 4.149 13 C -0.050 4.050 14 N -0.269 5.269 15 C 0.005 3.995 16 C -0.195 4.195 17 C -0.061 4.061 18 N -0.186 5.186 19 H 0.271 0.729 20 C -0.029 4.029 21 C -0.155 4.155 22 C -0.125 4.125 23 C -0.175 4.175 24 C -0.106 4.106 25 C -0.121 4.121 26 C -0.045 4.045 27 H 0.069 0.931 28 H 0.074 0.926 29 H 0.044 0.956 30 H 0.060 0.940 31 H 0.083 0.917 32 H 0.095 0.905 33 H 0.045 0.955 34 H 0.088 0.912 35 H 0.063 0.937 36 H 0.211 0.789 37 H 0.163 0.837 38 H 0.168 0.832 39 H 0.152 0.848 40 H 0.127 0.873 41 H 0.037 0.963 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.251 -21.905 2.098 22.007 hybrid contribution 0.756 1.211 0.745 1.610 sum 1.007 -20.693 2.843 20.912 Atomic orbital electron populations 1.70056 1.07264 1.26948 1.51395 1.25741 0.95637 1.02392 0.94814 0.85548 0.79121 0.79685 0.77543 1.19028 1.20718 1.20609 1.21561 0.93032 0.92095 1.50555 0.92885 1.18582 0.92999 0.91461 0.93556 0.98938 1.21433 0.99036 0.95925 0.97492 1.21588 0.97699 0.95378 1.00227 1.21893 0.94854 0.98303 0.89930 1.61984 1.24686 1.01608 1.38624 1.20301 0.92313 0.86026 1.00880 1.20143 1.05735 0.98805 0.94780 1.21965 0.96885 0.87944 0.99328 1.41640 1.41361 1.23646 1.12000 0.72920 1.18498 0.99984 0.97838 0.86585 1.20340 0.99605 0.99890 0.95661 1.21137 0.99875 0.97600 0.93841 1.20899 0.99637 0.95846 1.01131 1.20452 0.97746 0.99010 0.93379 1.19302 1.01456 0.96360 0.95021 1.21976 0.95252 0.88776 0.98519 0.93137 0.92614 0.95646 0.94007 0.91679 0.90458 0.95504 0.91216 0.93745 0.78864 0.83737 0.83167 0.84827 0.87345 0.96313 0.92629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.63 11.36 21.45 0.24 -54.38 16 2 C 0.01 0.72 5.31 84.66 0.45 1.17 16 3 Si 0.96 44.48 29.54 68.60 2.03 46.51 16 4 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 5 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 6 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 7 C -0.53 -30.33 8.56 25.60 0.22 -30.11 16 8 H 0.05 2.94 7.74 -2.91 -0.02 2.92 16 9 C 0.05 2.80 2.26 -11.49 -0.03 2.77 16 10 H -0.01 -0.46 8.14 -2.38 -0.02 -0.48 16 11 C -0.10 -5.02 5.03 30.67 0.15 -4.87 16 12 C -0.11 -4.59 6.09 30.64 0.19 -4.40 16 13 C 0.08 2.79 4.94 86.32 0.43 3.22 16 14 N -0.54 -20.77 4.80 -900.93 -4.32 -25.09 16 15 C 0.13 4.10 5.81 85.56 0.50 4.60 16 16 C -0.19 -5.17 4.04 -18.63 -0.08 -5.25 16 17 C 0.07 1.38 10.88 83.00 0.90 2.28 16 18 N -0.58 -10.50 6.07 -187.61 -1.14 -11.63 16 19 H 0.43 4.51 8.96 -92.71 -0.83 3.67 16 20 C 0.08 1.84 7.28 39.03 0.28 2.12 16 21 C -0.13 -2.63 10.08 22.37 0.23 -2.41 16 22 C -0.11 -2.07 10.01 22.30 0.22 -1.85 16 23 C -0.16 -3.70 9.97 22.03 0.22 -3.48 16 24 C -0.09 -2.54 10.05 22.23 0.22 -2.31 16 25 C -0.12 -3.38 6.35 -20.20 -0.13 -3.51 16 26 C 0.08 3.62 4.65 86.33 0.40 4.02 16 27 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 28 H 0.06 3.14 6.16 -2.39 -0.01 3.12 16 29 H 0.02 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 32 H 0.08 2.58 6.03 -2.39 -0.01 2.56 16 33 H 0.03 0.91 8.14 -2.39 -0.02 0.90 16 34 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 35 H 0.04 1.26 8.08 -2.39 -0.02 1.24 16 36 H 0.19 2.80 8.06 -2.91 -0.02 2.77 16 37 H 0.14 1.89 8.06 -2.91 -0.02 1.87 16 38 H 0.15 1.98 8.06 -2.91 -0.02 1.95 16 39 H 0.13 2.62 8.06 -2.91 -0.02 2.60 16 40 H 0.11 3.35 8.06 -2.91 -0.02 3.33 16 41 H 0.02 0.81 8.14 -2.38 -0.02 0.79 16 42 H 0.06 2.42 8.12 -2.39 -0.02 2.41 16 Total: -1.00 -68.09 335.09 1.17 -66.93 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: 0.18 Total: 15.68 kcal Atomic # 6 Polarization: -42.19 SS G_CDS: 4.18 Total: -38.00 kcal Atomic # 7 Polarization: -85.89 SS G_CDS: -5.22 Total: -91.11 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -68.09 1.17 -66.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204043112.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.406 kcal (2) G-P(sol) polarization free energy of solvation -68.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds