Wall clock time and date at job start Tue Mar 31 2020 06:43:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 119.99840 * 2 1 4 4 H 1.48499 * 109.46995 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47169 * 300.00659 * 3 2 1 6 6 H 1.48505 * 109.47081 * 60.00320 * 3 2 1 7 7 C 1.37871 * 120.00248 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00219 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00247 * 359.97438 * 7 2 1 10 10 C 1.53112 * 109.52646 * 180.02562 * 9 7 2 11 11 C 1.53033 * 109.28162 * 182.37764 * 10 9 7 12 12 N 1.46846 * 109.52232 * 59.17477 * 11 10 9 13 13 C 1.46907 * 111.00213 * 174.16225 * 12 11 10 14 14 C 1.50695 * 109.47278 * 170.00145 * 13 12 11 15 15 C 1.34234 * 126.50486 * 260.29146 * 14 13 12 16 16 N 1.36830 * 109.93384 * 180.19022 * 15 14 13 17 17 H 0.97001 * 125.06783 * 179.82141 * 16 15 14 18 18 C 1.37689 * 109.86882 * 359.54926 * 16 15 14 19 19 C 1.39134 * 133.50571 * 180.26034 * 18 16 15 20 20 C 1.37745 * 119.77479 * 180.02562 * 19 18 16 21 21 C 1.38830 * 120.67221 * 0.02562 * 20 19 18 22 22 C 1.36628 * 120.52453 * 359.97438 * 21 20 19 23 23 C 1.39628 * 119.76381 * 359.97438 * 22 21 20 24 24 C 1.46846 * 111.20274 * 298.26091 * 12 11 10 25 25 C 1.53039 * 109.52108 * 61.74256 * 24 12 11 26 26 H 0.97001 * 120.00313 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.52038 * 300.12941 * 9 7 2 28 28 H 1.08998 * 109.50437 * 62.43270 * 10 9 7 29 29 H 1.09000 * 109.53540 * 302.33903 * 10 9 7 30 30 H 1.09005 * 109.46139 * 299.16355 * 11 10 9 31 31 H 1.09002 * 109.45926 * 179.19149 * 11 10 9 32 32 H 1.08996 * 109.46580 * 50.00130 * 13 12 11 33 33 H 1.09000 * 109.46964 * 290.00493 * 13 12 11 34 34 H 1.07999 * 125.03333 * 0.02757 * 15 14 13 35 35 H 1.08000 * 120.10688 * 359.97438 * 19 18 16 36 36 H 1.08006 * 119.66035 * 180.02562 * 20 19 18 37 37 H 1.07995 * 119.73837 * 179.97438 * 21 20 19 38 38 H 1.07999 * 120.11413 * 179.97438 * 22 21 20 39 39 H 1.09002 * 109.46545 * 181.75618 * 24 12 11 40 40 H 1.09001 * 109.46254 * 301.72864 * 24 12 11 41 41 H 1.08995 * 109.50332 * 180.88233 * 25 24 12 42 42 H 1.08995 * 109.54144 * 60.77905 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3464 -0.0006 5 1 1.8902 2.3966 -1.2124 6 1 1.8903 2.3965 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2450 -3.6638 -0.0005 11 6 1.4753 -4.9851 -0.0605 12 7 0.6534 -5.0195 -1.2769 13 6 0.0070 -6.3287 -1.4388 14 6 -1.0109 -6.2528 -2.5474 15 6 -2.3376 -6.1067 -2.4047 16 7 -2.9392 -6.0831 -3.6334 17 1 -3.8925 -5.9890 -3.7855 18 6 -1.9889 -6.2068 -4.6221 19 6 -2.0508 -6.2371 -6.0118 20 6 -0.8932 -6.3760 -6.7452 21 6 0.3374 -6.4868 -6.1120 22 6 0.4212 -6.4595 -4.7486 23 6 -0.7396 -6.3184 -3.9855 24 6 -0.3404 -3.9384 -1.2771 25 6 0.3752 -2.5859 -1.2536 26 1 -0.4850 0.8400 0.0004 27 1 0.6227 -2.5570 0.8882 28 1 2.8429 -3.6320 0.9103 29 1 2.8996 -3.5844 -0.8685 30 1 0.8317 -5.0705 0.8152 31 1 2.1807 -5.8160 -0.0751 32 1 -0.4887 -6.6066 -0.5087 33 1 0.7595 -7.0772 -1.6870 34 1 -2.8540 -6.0229 -1.4599 35 1 -3.0035 -6.1529 -6.5136 36 1 -0.9433 -6.3988 -7.8239 37 1 1.2355 -6.5955 -6.7019 38 1 1.3819 -6.5466 -4.2629 39 1 -0.9539 -4.0091 -2.1754 40 1 -0.9755 -4.0287 -0.3958 41 1 -0.3628 -1.7839 -1.2379 42 1 0.9998 -2.4884 -2.1415 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001204043628.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:44 Heat of formation + Delta-G solvation = 53.910846 kcal Electronic energy + Delta-G solvation = -22218.179947 eV Core-core repulsion = 19162.847928 eV Total energy + Delta-G solvation = -3055.332019 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.158 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.20034 -38.08285 -36.76069 -34.17145 -32.26267 -30.88279 -29.68609 -29.30706 -28.82231 -26.32353 -24.15064 -22.74457 -21.98076 -21.65920 -21.29172 -19.11490 -18.47410 -17.63685 -16.33599 -16.21613 -15.39005 -15.23937 -14.44486 -14.20438 -14.11342 -14.04284 -13.74437 -13.46905 -12.92166 -12.56695 -12.54928 -12.28482 -11.90062 -11.62891 -11.55740 -11.30469 -11.24062 -10.91336 -10.70289 -10.63627 -10.33054 -10.11484 -9.88948 -9.46997 -9.33676 -8.86608 -8.60236 -8.22890 -8.10174 -7.68968 -7.41336 -5.91252 -3.96021 1.24915 1.75141 2.75592 3.19632 3.34039 3.41958 3.46400 4.04304 4.50241 4.71830 4.83701 4.91240 5.08094 5.21955 5.37059 5.39091 5.42972 5.65890 5.80192 5.81979 5.84518 5.96984 6.01611 6.06748 6.20796 6.28398 6.37362 6.45670 6.58873 6.73291 6.73479 6.75806 6.81724 6.91906 6.95276 7.17813 7.26752 7.29260 7.55806 7.59031 7.73272 7.84333 7.93937 8.14330 8.25441 8.56116 9.08037 9.68032 11.14941 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.020178 B = 0.004185 C = 0.004002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.348009 B = 6688.368651 C = 6994.926830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.060 3.940 3 Si 0.888 3.112 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.286 1.286 7 C -0.508 4.508 8 H 0.054 0.946 9 C 0.047 3.953 10 C -0.106 4.106 11 C 0.060 3.940 12 N -0.529 5.529 13 C 0.126 3.874 14 C -0.152 4.152 15 C 0.049 3.951 16 N -0.596 5.596 17 H 0.413 0.587 18 C 0.093 3.907 19 C -0.137 4.137 20 C -0.101 4.101 21 C -0.154 4.154 22 C -0.055 4.055 23 C -0.088 4.088 24 C 0.061 3.939 25 C -0.103 4.103 26 H 0.257 0.743 27 H 0.019 0.981 28 H 0.048 0.952 29 H 0.056 0.944 30 H 0.022 0.978 31 H 0.056 0.944 32 H 0.032 0.968 33 H 0.074 0.926 34 H 0.166 0.834 35 H 0.115 0.885 36 H 0.120 0.880 37 H 0.119 0.881 38 H 0.124 0.876 39 H 0.060 0.940 40 H 0.015 0.985 41 H 0.089 0.911 42 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.579 -15.106 -8.519 18.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.140 4.140 3 Si 0.716 3.284 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.212 1.212 7 C -0.546 4.546 8 H 0.073 0.927 9 C 0.029 3.971 10 C -0.143 4.143 11 C -0.067 4.067 12 N -0.254 5.254 13 C -0.002 4.002 14 C -0.159 4.159 15 C -0.077 4.077 16 N -0.199 5.199 17 H 0.250 0.750 18 C -0.014 4.014 19 C -0.157 4.157 20 C -0.121 4.121 21 C -0.173 4.173 22 C -0.074 4.074 23 C -0.093 4.093 24 C -0.067 4.067 25 C -0.141 4.141 26 H 0.067 0.933 27 H 0.037 0.963 28 H 0.067 0.933 29 H 0.075 0.925 30 H 0.040 0.960 31 H 0.075 0.925 32 H 0.050 0.950 33 H 0.092 0.908 34 H 0.183 0.817 35 H 0.133 0.867 36 H 0.138 0.862 37 H 0.137 0.863 38 H 0.142 0.858 39 H 0.078 0.922 40 H 0.034 0.966 41 H 0.107 0.893 42 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -5.535 -14.893 -8.882 18.203 hybrid contribution -0.699 0.975 0.639 1.359 sum -6.233 -13.918 -8.244 17.336 Atomic orbital electron populations 1.69894 1.05872 1.26039 1.51428 1.24960 0.94808 0.98951 0.95313 0.86602 0.80242 0.84106 0.77436 1.19812 1.21130 1.21194 1.21271 0.92908 0.90736 1.49670 0.92743 1.18691 0.92726 0.91716 0.93984 1.21663 0.98682 0.93822 1.00177 1.22117 0.95822 0.99194 0.89603 1.62105 1.23583 1.01818 1.37890 1.20380 0.93812 0.92741 0.93258 1.20145 0.92935 1.10138 0.92683 1.21609 0.93282 1.04504 0.88321 1.41666 1.08550 1.65150 1.04551 0.75048 1.18279 0.88881 1.04014 0.90246 1.19945 0.98883 1.07162 0.89740 1.20744 0.91930 1.00276 0.99120 1.20605 0.97481 1.04829 0.94432 1.20337 0.97139 0.96812 0.93099 1.19013 0.92375 1.05398 0.92510 1.22257 0.93168 0.92721 0.98510 1.21633 1.00072 0.93237 0.99177 0.93280 0.96290 0.93320 0.92515 0.95969 0.92505 0.95023 0.90764 0.81690 0.86714 0.86183 0.86308 0.85825 0.92169 0.96628 0.89300 0.94010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.93 11.37 55.43 0.63 -25.30 16 2 C 0.06 1.70 5.31 -17.82 -0.09 1.60 16 3 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 4 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.51 -14.25 8.56 -34.44 -0.29 -14.55 16 8 H 0.05 1.52 7.75 -52.48 -0.41 1.11 16 9 C 0.05 1.21 2.16 -91.65 -0.20 1.01 16 10 C -0.11 -2.27 5.32 -26.66 -0.14 -2.42 16 11 C 0.06 1.11 5.42 -3.84 -0.02 1.09 16 12 N -0.53 -9.72 4.80 -236.11 -1.13 -10.86 16 13 C 0.13 1.91 5.81 -4.97 -0.03 1.88 16 14 C -0.15 -2.25 4.06 -102.71 -0.42 -2.66 16 15 C 0.05 0.63 10.86 -16.73 -0.18 0.45 16 16 N -0.60 -6.92 6.07 -10.65 -0.06 -6.98 16 17 H 0.41 3.41 8.96 -40.82 -0.37 3.04 16 18 C 0.09 1.26 7.28 -83.99 -0.61 0.65 16 19 C -0.14 -1.63 10.08 -39.43 -0.40 -2.03 16 20 C -0.10 -1.17 10.01 -39.54 -0.40 -1.56 16 21 C -0.15 -1.91 9.97 -39.94 -0.40 -2.31 16 22 C -0.06 -0.79 10.05 -39.64 -0.40 -1.19 16 23 C -0.09 -1.34 6.35 -105.14 -0.67 -2.01 16 24 C 0.06 1.24 4.93 -3.83 -0.02 1.22 16 25 C -0.10 -2.53 5.13 -26.65 -0.14 -2.67 16 26 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 27 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 29 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.91 8.12 -51.93 -0.42 0.49 16 32 H 0.03 0.45 8.08 -51.93 -0.42 0.03 16 33 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.17 1.71 8.06 -52.49 -0.42 1.29 16 35 H 0.11 1.08 8.06 -52.49 -0.42 0.66 16 36 H 0.12 1.06 8.06 -52.48 -0.42 0.63 16 37 H 0.12 1.21 8.06 -52.49 -0.42 0.78 16 38 H 0.12 1.70 8.06 -52.49 -0.42 1.28 16 39 H 0.06 1.22 6.02 -51.93 -0.31 0.90 16 40 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.09 2.43 6.18 -51.93 -0.32 2.11 16 42 H 0.04 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 335.10 15.07 5.05 5.05 Total: -1.00 -30.98 335.10 -11.40 -42.37 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -6.46 Total: 2.54 kcal Atomic # 6 Polarization: -19.09 SS G_CDS: -4.40 Total: -23.49 kcal Atomic # 7 Polarization: -42.57 SS G_CDS: -0.57 Total: -43.14 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.98 -11.40 -42.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204043628.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.282 kcal (2) G-P(sol) polarization free energy of solvation -30.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds