Wall clock time and date at job start Tue Mar 31 2020 06:43:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 119.99840 * 2 1 4 4 H 1.48499 * 109.46995 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47169 * 300.00659 * 3 2 1 6 6 H 1.48505 * 109.47081 * 60.00320 * 3 2 1 7 7 C 1.37871 * 120.00248 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00219 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00247 * 359.97438 * 7 2 1 10 10 C 1.53112 * 109.52646 * 180.02562 * 9 7 2 11 11 C 1.53033 * 109.28162 * 182.37764 * 10 9 7 12 12 N 1.46846 * 109.52232 * 59.17477 * 11 10 9 13 13 C 1.46907 * 111.00213 * 174.16225 * 12 11 10 14 14 C 1.50695 * 109.47278 * 170.00145 * 13 12 11 15 15 C 1.34234 * 126.50486 * 260.29146 * 14 13 12 16 16 N 1.36830 * 109.93384 * 180.19022 * 15 14 13 17 17 H 0.97001 * 125.06783 * 179.82141 * 16 15 14 18 18 C 1.37689 * 109.86882 * 359.54926 * 16 15 14 19 19 C 1.39134 * 133.50571 * 180.26034 * 18 16 15 20 20 C 1.37745 * 119.77479 * 180.02562 * 19 18 16 21 21 C 1.38830 * 120.67221 * 0.02562 * 20 19 18 22 22 C 1.36628 * 120.52453 * 359.97438 * 21 20 19 23 23 C 1.39628 * 119.76381 * 359.97438 * 22 21 20 24 24 C 1.46846 * 111.20274 * 298.26091 * 12 11 10 25 25 C 1.53039 * 109.52108 * 61.74256 * 24 12 11 26 26 H 0.97001 * 120.00313 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.52038 * 300.12941 * 9 7 2 28 28 H 1.08998 * 109.50437 * 62.43270 * 10 9 7 29 29 H 1.09000 * 109.53540 * 302.33903 * 10 9 7 30 30 H 1.09005 * 109.46139 * 299.16355 * 11 10 9 31 31 H 1.09002 * 109.45926 * 179.19149 * 11 10 9 32 32 H 1.08996 * 109.46580 * 50.00130 * 13 12 11 33 33 H 1.09000 * 109.46964 * 290.00493 * 13 12 11 34 34 H 1.07999 * 125.03333 * 0.02757 * 15 14 13 35 35 H 1.08000 * 120.10688 * 359.97438 * 19 18 16 36 36 H 1.08006 * 119.66035 * 180.02562 * 20 19 18 37 37 H 1.07995 * 119.73837 * 179.97438 * 21 20 19 38 38 H 1.07999 * 120.11413 * 179.97438 * 22 21 20 39 39 H 1.09002 * 109.46545 * 181.75618 * 24 12 11 40 40 H 1.09001 * 109.46254 * 301.72864 * 24 12 11 41 41 H 1.08995 * 109.50332 * 180.88233 * 25 24 12 42 42 H 1.08995 * 109.54144 * 60.77905 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3464 -0.0006 5 1 1.8902 2.3966 -1.2124 6 1 1.8903 2.3965 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2450 -3.6638 -0.0005 11 6 1.4753 -4.9851 -0.0605 12 7 0.6534 -5.0195 -1.2769 13 6 0.0070 -6.3287 -1.4388 14 6 -1.0109 -6.2528 -2.5474 15 6 -2.3376 -6.1067 -2.4047 16 7 -2.9392 -6.0831 -3.6334 17 1 -3.8925 -5.9890 -3.7855 18 6 -1.9889 -6.2068 -4.6221 19 6 -2.0508 -6.2371 -6.0118 20 6 -0.8932 -6.3760 -6.7452 21 6 0.3374 -6.4868 -6.1120 22 6 0.4212 -6.4595 -4.7486 23 6 -0.7396 -6.3184 -3.9855 24 6 -0.3404 -3.9384 -1.2771 25 6 0.3752 -2.5859 -1.2536 26 1 -0.4850 0.8400 0.0004 27 1 0.6227 -2.5570 0.8882 28 1 2.8429 -3.6320 0.9103 29 1 2.8996 -3.5844 -0.8685 30 1 0.8317 -5.0705 0.8152 31 1 2.1807 -5.8160 -0.0751 32 1 -0.4887 -6.6066 -0.5087 33 1 0.7595 -7.0772 -1.6870 34 1 -2.8540 -6.0229 -1.4599 35 1 -3.0035 -6.1529 -6.5136 36 1 -0.9433 -6.3988 -7.8239 37 1 1.2355 -6.5955 -6.7019 38 1 1.3819 -6.5466 -4.2629 39 1 -0.9539 -4.0091 -2.1754 40 1 -0.9755 -4.0287 -0.3958 41 1 -0.3628 -1.7839 -1.2379 42 1 0.9998 -2.4884 -2.1415 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001204043628.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:43 Heat of formation + Delta-G solvation = 36.219292 kcal Electronic energy + Delta-G solvation = -22218.947110 eV Core-core repulsion = 19162.847928 eV Total energy + Delta-G solvation = -3056.099182 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.158 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.17321 -39.66590 -37.71937 -35.91320 -33.85554 -32.31786 -31.40627 -30.33783 -29.92740 -27.97497 -25.80163 -23.74484 -23.63730 -23.03175 -22.57501 -20.30722 -20.15570 -18.63050 -18.41072 -17.21941 -16.86450 -16.33032 -16.25995 -15.56834 -15.38260 -15.20092 -14.80386 -14.74140 -14.53890 -14.29293 -14.10741 -13.75534 -13.12641 -13.02158 -12.92307 -12.83748 -12.57410 -12.47841 -12.30447 -12.18642 -11.97826 -11.81865 -11.59855 -11.32569 -10.79342 -10.63954 -10.42237 -10.35882 -9.08278 -9.05431 -8.47482 -8.06944 -6.20009 0.28863 0.78452 1.39464 1.41289 1.52930 1.73505 2.31216 2.44345 3.04480 3.19654 3.33138 3.89052 3.95684 4.11564 4.29601 4.30969 4.34783 4.38453 4.48336 4.53194 4.59208 4.73113 4.77412 4.86585 4.88756 4.96231 4.98362 5.02664 5.11143 5.15107 5.26920 5.32699 5.37633 5.60732 5.64554 5.65271 5.77614 5.84294 5.90325 6.03251 6.07200 6.31985 6.38648 6.43377 6.45734 6.76724 6.92015 7.47541 8.97810 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.020178 B = 0.004185 C = 0.004002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.348009 B = 6688.368651 C = 6994.926830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.012 3.988 3 Si 0.952 3.048 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.279 1.279 7 C -0.532 4.532 8 H 0.050 0.950 9 C 0.045 3.955 10 C -0.099 4.099 11 C 0.066 3.934 12 N -0.538 5.538 13 C 0.132 3.868 14 C -0.186 4.186 15 C 0.059 3.941 16 N -0.586 5.586 17 H 0.429 0.571 18 C 0.075 3.925 19 C -0.139 4.139 20 C -0.106 4.106 21 C -0.156 4.156 22 C -0.083 4.083 23 C -0.116 4.116 24 C 0.081 3.919 25 C -0.093 4.093 26 H 0.259 0.741 27 H -0.010 1.010 28 H 0.054 0.946 29 H 0.047 0.953 30 H 0.024 0.976 31 H 0.088 0.912 32 H 0.045 0.955 33 H 0.084 0.916 34 H 0.189 0.811 35 H 0.141 0.859 36 H 0.150 0.850 37 H 0.138 0.862 38 H 0.117 0.883 39 H 0.063 0.937 40 H 0.013 0.987 41 H 0.056 0.944 42 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.964 -16.020 -9.392 19.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.186 4.186 3 Si 0.778 3.222 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.205 1.205 7 C -0.570 4.570 8 H 0.068 0.932 9 C 0.026 3.974 10 C -0.137 4.137 11 C -0.061 4.061 12 N -0.263 5.263 13 C 0.005 3.995 14 C -0.193 4.193 15 C -0.069 4.069 16 N -0.190 5.190 17 H 0.268 0.732 18 C -0.033 4.033 19 C -0.159 4.159 20 C -0.125 4.125 21 C -0.175 4.175 22 C -0.101 4.101 23 C -0.121 4.121 24 C -0.046 4.046 25 C -0.131 4.131 26 H 0.068 0.932 27 H 0.008 0.992 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.042 0.958 31 H 0.106 0.894 32 H 0.063 0.937 33 H 0.102 0.898 34 H 0.206 0.794 35 H 0.159 0.841 36 H 0.168 0.832 37 H 0.156 0.844 38 H 0.135 0.865 39 H 0.081 0.919 40 H 0.031 0.969 41 H 0.075 0.925 42 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -5.933 -15.826 -9.766 19.520 hybrid contribution -0.601 1.243 0.859 1.626 sum -6.534 -14.582 -8.907 18.294 Atomic orbital electron populations 1.70029 1.07159 1.26875 1.51788 1.25736 0.95675 1.02326 0.94909 0.85596 0.79166 0.79883 0.77565 1.19173 1.20754 1.20486 1.21641 0.92984 0.92363 1.50011 0.93174 1.18660 0.93175 0.92659 0.92902 1.21533 0.97942 0.94184 1.00044 1.22053 0.96158 0.98173 0.89756 1.62019 1.23473 1.02927 1.37878 1.20365 0.94316 0.90690 0.94160 1.20210 0.93757 1.12759 0.92581 1.21971 0.92984 1.02489 0.89427 1.41672 1.09248 1.64157 1.03886 0.73171 1.18564 0.88868 1.04626 0.91211 1.20339 1.00316 1.06014 0.89239 1.21146 0.91355 0.99289 1.00709 1.20923 0.98888 1.03745 0.93988 1.20472 0.96931 0.98615 0.94120 1.19320 0.93394 1.06305 0.93098 1.21889 0.92981 0.91321 0.98449 1.21396 0.98980 0.94988 0.97783 0.93182 0.99219 0.92729 0.93385 0.95771 0.89354 0.93650 0.89784 0.79441 0.84106 0.83219 0.84443 0.86451 0.91866 0.96924 0.92507 0.96035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.60 11.37 21.44 0.24 -54.36 16 2 C 0.01 0.67 5.31 84.65 0.45 1.12 16 3 Si 0.95 44.96 29.54 68.60 2.03 46.98 16 4 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 5 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 6 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 7 C -0.53 -30.57 8.56 25.60 0.22 -30.35 16 8 H 0.05 2.84 7.75 -2.91 -0.02 2.82 16 9 C 0.04 2.34 2.16 -11.46 -0.02 2.31 16 10 C -0.10 -4.28 5.32 30.64 0.16 -4.12 16 11 C 0.07 2.35 5.42 86.32 0.47 2.82 16 12 N -0.54 -19.39 4.80 -900.92 -4.32 -23.71 16 13 C 0.13 3.81 5.81 85.55 0.50 4.31 16 14 C -0.19 -5.31 4.06 -18.63 -0.08 -5.39 16 15 C 0.06 1.41 10.86 83.00 0.90 2.31 16 16 N -0.59 -12.53 6.07 -187.61 -1.14 -13.67 16 17 H 0.43 6.12 8.96 -92.71 -0.83 5.29 16 18 C 0.07 1.93 7.28 39.03 0.28 2.21 16 19 C -0.14 -3.01 10.08 22.37 0.23 -2.79 16 20 C -0.11 -2.20 10.01 22.29 0.22 -1.98 16 21 C -0.16 -3.69 9.97 22.03 0.22 -3.47 16 22 C -0.08 -2.35 10.05 22.23 0.22 -2.13 16 23 C -0.12 -3.47 6.35 -20.20 -0.13 -3.60 16 24 C 0.08 3.35 4.93 86.33 0.43 3.78 16 25 C -0.09 -4.73 5.13 30.65 0.16 -4.57 16 26 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 27 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 28 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 29 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 30 H 0.02 0.85 8.14 -2.38 -0.02 0.83 16 31 H 0.09 2.61 8.12 -2.39 -0.02 2.59 16 32 H 0.05 1.19 8.08 -2.39 -0.02 1.17 16 33 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 34 H 0.19 3.45 8.06 -2.91 -0.02 3.43 16 35 H 0.14 2.22 8.06 -2.91 -0.02 2.20 16 36 H 0.15 2.14 8.06 -2.91 -0.02 2.12 16 37 H 0.14 2.58 8.06 -2.91 -0.02 2.56 16 38 H 0.12 3.30 8.06 -2.91 -0.02 3.28 16 39 H 0.06 2.56 6.02 -2.39 -0.01 2.55 16 40 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 41 H 0.06 3.23 6.18 -2.39 -0.01 3.21 16 42 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -68.10 335.10 1.21 -66.89 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: 0.18 Total: 17.41 kcal Atomic # 6 Polarization: -43.77 SS G_CDS: 4.23 Total: -39.54 kcal Atomic # 7 Polarization: -86.52 SS G_CDS: -5.22 Total: -91.74 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.98 kcal Total: -68.10 1.21 -66.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204043628.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.110 kcal (2) G-P(sol) polarization free energy of solvation -68.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds