Wall clock time and date at job start Tue Mar 31 2020 06:33:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47032 * 2 1 4 4 O 1.42894 * 109.47675 * 239.99658 * 2 1 3 5 5 C 1.42897 * 114.00288 * 89.99369 * 4 2 1 6 6 C 1.53001 * 109.47713 * 180.02562 * 5 4 2 7 7 C 1.53000 * 109.47223 * 180.02562 * 6 5 4 8 8 C 1.50703 * 109.46784 * 180.02562 * 7 6 5 9 9 H 1.08001 * 119.99893 * 359.97438 * 8 7 6 10 10 C 1.37875 * 119.99622 * 180.02562 * 8 7 6 11 11 N 1.31515 * 120.00211 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 119.99744 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.47140 * 89.99630 * 12 10 8 14 14 H 1.48497 * 109.47413 * 209.99770 * 12 10 8 15 15 H 1.48497 * 109.47187 * 330.00018 * 12 10 8 16 16 C 1.50699 * 109.47300 * 119.99544 * 2 1 3 17 17 C 1.36130 * 120.17535 * 94.99888 * 16 2 1 18 18 C 1.39329 * 120.99258 * 180.02562 * 17 16 2 19 19 C 1.36125 * 120.98923 * 359.97438 * 18 17 16 20 20 C 1.40501 * 119.65263 * 0.02562 * 19 18 17 21 21 C 1.40557 * 121.28769 * 179.97438 * 20 19 18 22 22 C 1.36081 * 119.65010 * 180.02562 * 21 20 19 23 23 C 1.39383 * 120.99897 * 0.02562 * 22 21 20 24 24 C 1.36094 * 120.98995 * 359.95151 * 23 22 21 25 25 C 1.40507 * 120.17537 * 275.02640 * 16 2 1 26 26 H 1.09003 * 109.47132 * 300.00274 * 1 2 3 27 27 H 1.09001 * 109.46792 * 60.00462 * 1 2 3 28 28 H 1.09005 * 109.46726 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47250 * 300.01124 * 5 4 2 30 30 H 1.09000 * 109.46732 * 60.00389 * 5 4 2 31 31 H 1.08999 * 109.46892 * 300.00620 * 6 5 4 32 32 H 1.08994 * 109.46583 * 60.00045 * 6 5 4 33 33 H 1.08999 * 109.47308 * 299.99894 * 7 6 5 34 34 H 1.08998 * 109.46967 * 60.00304 * 7 6 5 35 35 H 0.96994 * 119.99748 * 180.02562 * 11 10 8 36 36 H 1.08000 * 119.50276 * 0.04795 * 17 16 2 37 37 H 1.07998 * 119.50912 * 179.97438 * 18 17 16 38 38 H 1.07998 * 120.17668 * 179.72489 * 19 18 17 39 39 H 1.07995 * 120.17070 * 0.02562 * 21 20 19 40 40 H 1.08000 * 119.50492 * 180.02562 * 22 21 20 41 41 H 1.08004 * 119.50833 * 179.97438 * 23 22 21 42 42 H 1.08000 * 120.16912 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0065 -0.6737 -1.1666 5 6 2.2002 0.1828 -2.2940 6 6 2.7081 -0.6410 -3.4791 7 6 2.9161 0.2762 -4.6860 8 6 3.4158 -0.5353 -5.8533 9 1 3.5700 -1.5988 -5.7451 10 6 3.6770 0.0801 -7.0592 11 7 3.4896 1.3751 -7.1907 12 14 4.2971 -0.9257 -8.5060 13 1 3.1413 -1.4244 -9.2938 14 1 5.1544 -0.0745 -9.3695 15 1 5.0886 -2.0779 -8.0049 16 6 2.0324 -0.7103 1.2305 17 6 2.3572 -2.0311 1.1735 18 6 2.8227 -2.7047 2.3008 19 6 2.9669 -2.0616 3.4918 20 6 2.6417 -0.6982 3.5895 21 6 2.7768 -0.0005 4.8022 22 6 2.4516 1.3196 4.8592 23 6 1.9849 1.9933 3.7318 24 6 1.8417 1.3507 2.5407 25 6 2.1675 -0.0130 2.4428 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.2539 0.6545 -2.5588 30 1 2.9320 0.9512 -2.0450 31 1 3.6543 -1.1130 -3.2145 32 1 1.9760 -1.4091 -3.7279 33 1 1.9700 0.7485 -4.9507 34 1 3.6484 1.0441 -4.4368 35 1 3.6731 1.8079 -8.0392 36 1 2.2528 -2.5647 0.2404 37 1 3.0730 -3.7528 2.2286 38 1 3.3247 -2.5976 4.3584 39 1 3.1368 -0.5096 5.6840 40 1 2.5568 1.8535 5.7921 41 1 1.7334 3.0412 3.8044 42 1 1.4792 1.8857 1.6754 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205665180.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:02 Heat of formation + Delta-G solvation = -26.351202 kcal Electronic energy + Delta-G solvation = -21105.833137 eV Core-core repulsion = 18014.727944 eV Total energy + Delta-G solvation = -3091.105193 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.152 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.68101 -38.16365 -36.45562 -34.33419 -33.32458 -31.54708 -30.53541 -30.19469 -28.82206 -26.64358 -24.07654 -23.25842 -23.13661 -22.58826 -20.61268 -20.03615 -17.66157 -17.22252 -16.63454 -16.31090 -15.73086 -15.30443 -14.99684 -14.46185 -14.30137 -14.14354 -13.77782 -13.53076 -13.29261 -13.15075 -12.74050 -12.37610 -12.24779 -12.08040 -11.80481 -11.62752 -11.37021 -11.31612 -11.03203 -10.88188 -10.65596 -10.51900 -10.31175 -10.01074 -9.81289 -9.43861 -9.21433 -9.10044 -8.71103 -8.35170 -7.95349 -6.00493 -4.02632 0.40291 0.91415 1.91745 2.89986 3.32821 3.38764 3.42713 3.82473 3.99561 4.43852 4.48180 4.70087 4.72876 4.81597 4.92572 5.02392 5.08966 5.20706 5.27238 5.28731 5.35596 5.44466 5.58383 5.64738 5.70497 5.75269 5.84396 5.91025 6.02577 6.08302 6.14080 6.18716 6.22322 6.31357 6.45291 6.54022 6.68658 6.69880 6.77208 6.90989 7.09836 7.57192 7.66863 7.79054 7.99166 8.42095 9.04036 9.61425 11.11101 Molecular weight = 284.15amu Principal moments of inertia in cm(-1) A = 0.028503 B = 0.002820 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.110726 B = 9927.952885 C =10351.844096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.124 3.876 3 H 0.069 0.931 4 O -0.380 6.380 5 C 0.063 3.937 6 C -0.107 4.107 7 C 0.024 3.976 8 C -0.519 4.519 9 H 0.056 0.944 10 C 0.056 3.944 11 N -0.897 5.897 12 Si 0.894 3.106 13 H -0.280 1.280 14 H -0.286 1.286 15 H -0.273 1.273 16 C -0.071 4.071 17 C -0.090 4.090 18 C -0.111 4.111 19 C -0.114 4.114 20 C -0.053 4.053 21 C -0.106 4.106 22 C -0.121 4.121 23 C -0.119 4.119 24 C -0.108 4.108 25 C -0.042 4.042 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.045 0.955 30 H 0.044 0.956 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.017 0.983 34 H 0.017 0.983 35 H 0.261 0.739 36 H 0.134 0.866 37 H 0.124 0.876 38 H 0.125 0.875 39 H 0.125 0.875 40 H 0.121 0.879 41 H 0.122 0.878 42 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.380 -1.844 25.166 25.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.066 3.934 3 H 0.086 0.914 4 O -0.300 6.300 5 C -0.013 4.013 6 C -0.145 4.145 7 C -0.013 4.013 8 C -0.557 4.557 9 H 0.075 0.925 10 C -0.145 4.145 11 N -0.536 5.536 12 Si 0.721 3.279 13 H -0.206 1.206 14 H -0.212 1.212 15 H -0.198 1.198 16 C -0.071 4.071 17 C -0.108 4.108 18 C -0.129 4.129 19 C -0.132 4.132 20 C -0.053 4.053 21 C -0.124 4.124 22 C -0.139 4.139 23 C -0.137 4.137 24 C -0.126 4.126 25 C -0.042 4.042 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.035 0.965 34 H 0.035 0.965 35 H 0.070 0.930 36 H 0.152 0.848 37 H 0.142 0.858 38 H 0.143 0.857 39 H 0.143 0.857 40 H 0.139 0.861 41 H 0.140 0.860 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -4.326 -1.895 25.024 25.466 hybrid contribution 0.318 -0.134 -0.853 0.920 sum -4.009 -2.028 24.171 24.585 Atomic orbital electron populations 1.22260 0.94972 1.03139 1.02198 1.20724 0.93540 0.95086 0.84076 0.91352 1.87908 1.86366 1.35940 1.19785 1.22850 0.99046 0.93453 0.85975 1.21646 1.00198 0.99222 0.93388 1.19044 0.97085 0.94498 0.90715 1.21221 1.43983 0.94719 0.95805 0.92533 1.25027 0.95694 0.94930 0.98862 1.69963 1.49247 1.09040 1.25346 0.86568 0.78824 0.80073 0.82401 1.20638 1.21220 1.19824 1.19644 0.99659 0.94601 0.93179 1.20813 0.96994 0.94209 0.98808 1.20927 0.99037 1.00194 0.92775 1.21000 1.00695 0.93320 0.98217 1.18035 0.99952 0.94061 0.93266 1.21002 1.00062 0.94733 0.96599 1.20827 0.99724 0.94789 0.98558 1.20845 0.99835 1.00055 0.92922 1.21116 0.99717 0.93472 0.98280 1.17856 0.99773 0.93778 0.92781 0.91837 0.91668 0.91610 0.93718 0.93793 0.92599 0.92567 0.96499 0.96499 0.92985 0.84768 0.85846 0.85741 0.85724 0.86143 0.86021 0.85484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.01 9.51 37.16 0.35 -1.65 16 2 C 0.12 1.70 2.34 -27.88 -0.07 1.63 16 3 H 0.07 0.89 6.35 -51.93 -0.33 0.56 16 4 O -0.38 -6.38 8.80 -35.23 -0.31 -6.69 16 5 C 0.06 1.13 5.75 37.16 0.21 1.35 16 6 C -0.11 -2.30 5.52 -26.73 -0.15 -2.45 16 7 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 8 C -0.52 -14.91 9.11 -34.44 -0.31 -15.22 16 9 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 10 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 11 N -0.90 -27.10 13.29 55.43 0.74 -26.37 16 12 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 13 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 14 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 15 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 16 C -0.07 -0.95 5.08 -104.53 -0.53 -1.48 16 17 C -0.09 -1.18 9.28 -39.93 -0.37 -1.55 16 18 C -0.11 -1.22 9.95 -39.94 -0.40 -1.62 16 19 C -0.11 -1.19 9.77 -39.49 -0.39 -1.57 16 20 C -0.05 -0.61 5.74 -106.83 -0.61 -1.22 16 21 C -0.11 -1.00 9.77 -39.48 -0.39 -1.39 16 22 C -0.12 -1.06 9.95 -39.93 -0.40 -1.46 16 23 C -0.12 -1.11 9.95 -39.93 -0.40 -1.51 16 24 C -0.11 -1.18 9.19 -39.48 -0.36 -1.54 16 25 C -0.04 -0.52 5.74 -106.83 -0.61 -1.14 16 26 H 0.06 0.65 8.05 -51.93 -0.42 0.23 16 27 H 0.06 0.77 7.87 -51.93 -0.41 0.36 16 28 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.04 0.77 7.87 -51.93 -0.41 0.36 16 30 H 0.04 0.78 8.08 -51.93 -0.42 0.36 16 31 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 36 H 0.13 1.81 7.29 -52.49 -0.38 1.43 16 37 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 38 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 39 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 40 H 0.12 0.76 8.06 -52.49 -0.42 0.33 16 41 H 0.12 0.86 8.06 -52.48 -0.42 0.44 16 42 H 0.13 1.25 6.49 -52.49 -0.34 0.91 16 LS Contribution 349.05 15.07 5.26 5.26 Total: -1.00 -31.47 349.05 -10.46 -41.93 By element: Atomic # 1 Polarization: 4.35 SS G_CDS: -6.48 Total: -2.13 kcal Atomic # 6 Polarization: -24.18 SS G_CDS: -4.65 Total: -28.83 kcal Atomic # 7 Polarization: -27.10 SS G_CDS: 0.74 Total: -26.37 kcal Atomic # 8 Polarization: -6.38 SS G_CDS: -0.31 Total: -6.69 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.47 -10.46 -41.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205665180.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.576 kcal (2) G-P(sol) polarization free energy of solvation -31.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds