Wall clock time and date at job start Tue Mar 31 2020 06:33:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47032 * 2 1 4 4 O 1.42894 * 109.47675 * 239.99658 * 2 1 3 5 5 C 1.42897 * 114.00288 * 89.99369 * 4 2 1 6 6 C 1.53001 * 109.47713 * 180.02562 * 5 4 2 7 7 C 1.53000 * 109.47223 * 180.02562 * 6 5 4 8 8 C 1.50703 * 109.46784 * 180.02562 * 7 6 5 9 9 H 1.08001 * 119.99893 * 359.97438 * 8 7 6 10 10 C 1.37875 * 119.99622 * 180.02562 * 8 7 6 11 11 N 1.31515 * 120.00211 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 119.99744 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.47140 * 89.99630 * 12 10 8 14 14 H 1.48497 * 109.47413 * 209.99770 * 12 10 8 15 15 H 1.48497 * 109.47187 * 330.00018 * 12 10 8 16 16 C 1.50699 * 109.47300 * 119.99544 * 2 1 3 17 17 C 1.36130 * 120.17535 * 94.99888 * 16 2 1 18 18 C 1.39329 * 120.99258 * 180.02562 * 17 16 2 19 19 C 1.36125 * 120.98923 * 359.97438 * 18 17 16 20 20 C 1.40501 * 119.65263 * 0.02562 * 19 18 17 21 21 C 1.40557 * 121.28769 * 179.97438 * 20 19 18 22 22 C 1.36081 * 119.65010 * 180.02562 * 21 20 19 23 23 C 1.39383 * 120.99897 * 0.02562 * 22 21 20 24 24 C 1.36094 * 120.98995 * 359.95151 * 23 22 21 25 25 C 1.40507 * 120.17537 * 275.02640 * 16 2 1 26 26 H 1.09003 * 109.47132 * 300.00274 * 1 2 3 27 27 H 1.09001 * 109.46792 * 60.00462 * 1 2 3 28 28 H 1.09005 * 109.46726 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47250 * 300.01124 * 5 4 2 30 30 H 1.09000 * 109.46732 * 60.00389 * 5 4 2 31 31 H 1.08999 * 109.46892 * 300.00620 * 6 5 4 32 32 H 1.08994 * 109.46583 * 60.00045 * 6 5 4 33 33 H 1.08999 * 109.47308 * 299.99894 * 7 6 5 34 34 H 1.08998 * 109.46967 * 60.00304 * 7 6 5 35 35 H 0.96994 * 119.99748 * 180.02562 * 11 10 8 36 36 H 1.08000 * 119.50276 * 0.04795 * 17 16 2 37 37 H 1.07998 * 119.50912 * 179.97438 * 18 17 16 38 38 H 1.07998 * 120.17668 * 179.72489 * 19 18 17 39 39 H 1.07995 * 120.17070 * 0.02562 * 21 20 19 40 40 H 1.08000 * 119.50492 * 180.02562 * 22 21 20 41 41 H 1.08004 * 119.50833 * 179.97438 * 23 22 21 42 42 H 1.08000 * 120.16912 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0065 -0.6737 -1.1666 5 6 2.2002 0.1828 -2.2940 6 6 2.7081 -0.6410 -3.4791 7 6 2.9161 0.2762 -4.6860 8 6 3.4158 -0.5353 -5.8533 9 1 3.5700 -1.5988 -5.7451 10 6 3.6770 0.0801 -7.0592 11 7 3.4896 1.3751 -7.1907 12 14 4.2971 -0.9257 -8.5060 13 1 3.1413 -1.4244 -9.2938 14 1 5.1544 -0.0745 -9.3695 15 1 5.0886 -2.0779 -8.0049 16 6 2.0324 -0.7103 1.2305 17 6 2.3572 -2.0311 1.1735 18 6 2.8227 -2.7047 2.3008 19 6 2.9669 -2.0616 3.4918 20 6 2.6417 -0.6982 3.5895 21 6 2.7768 -0.0005 4.8022 22 6 2.4516 1.3196 4.8592 23 6 1.9849 1.9933 3.7318 24 6 1.8417 1.3507 2.5407 25 6 2.1675 -0.0130 2.4428 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.2539 0.6545 -2.5588 30 1 2.9320 0.9512 -2.0450 31 1 3.6543 -1.1130 -3.2145 32 1 1.9760 -1.4091 -3.7279 33 1 1.9700 0.7485 -4.9507 34 1 3.6484 1.0441 -4.4368 35 1 3.6731 1.8079 -8.0392 36 1 2.2528 -2.5647 0.2404 37 1 3.0730 -3.7528 2.2286 38 1 3.3247 -2.5976 4.3584 39 1 3.1368 -0.5096 5.6840 40 1 2.5568 1.8535 5.7921 41 1 1.7334 3.0412 3.8044 42 1 1.4792 1.8857 1.6754 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205665180.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:02 Heat of formation + Delta-G solvation = -41.150584 kcal Electronic energy + Delta-G solvation = -21106.474887 eV Core-core repulsion = 18014.727944 eV Total energy + Delta-G solvation = -3091.746943 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.152 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.51427 -39.36266 -37.31398 -36.03925 -34.68835 -33.31442 -31.46849 -31.10751 -29.67807 -28.55159 -25.28464 -24.62295 -23.93863 -23.69773 -22.15279 -21.28257 -18.69153 -18.39750 -17.97933 -17.59282 -16.83228 -16.71347 -16.41348 -16.01001 -15.23015 -15.14564 -14.75374 -14.54819 -14.44300 -14.30284 -14.01575 -13.72474 -13.57847 -13.38024 -13.14058 -12.86558 -12.71809 -12.54339 -12.40320 -12.18107 -12.03775 -11.82187 -11.71438 -11.55152 -11.38077 -11.20438 -10.83556 -10.57320 -10.50391 -9.52400 -8.76444 -8.22268 -6.33298 -0.39421 0.10151 1.10220 1.39849 1.41349 1.52713 2.10735 2.38740 2.61907 3.11118 3.17320 3.58958 3.90479 3.93834 4.01558 4.06560 4.11540 4.17128 4.24484 4.31977 4.35869 4.48313 4.53198 4.57488 4.61671 4.69113 4.80282 4.87635 4.90753 4.94068 5.06335 5.15962 5.19245 5.24607 5.31216 5.38832 5.47623 5.54461 5.63260 5.68483 5.71357 5.81290 5.92732 6.12281 6.18398 6.32476 6.82283 7.35861 8.89857 Molecular weight = 284.15amu Principal moments of inertia in cm(-1) A = 0.028503 B = 0.002820 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.110726 B = 9927.952885 C =10351.844096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.121 3.879 3 H 0.072 0.928 4 O -0.392 6.392 5 C 0.074 3.926 6 C -0.095 4.095 7 C 0.029 3.971 8 C -0.545 4.545 9 H 0.059 0.941 10 C 0.000 4.000 11 N -0.932 5.932 12 Si 0.967 3.033 13 H -0.271 1.271 14 H -0.280 1.280 15 H -0.264 1.264 16 C -0.090 4.090 17 C -0.107 4.107 18 C -0.124 4.124 19 C -0.108 4.108 20 C -0.074 4.074 21 C -0.108 4.108 22 C -0.123 4.123 23 C -0.115 4.115 24 C -0.131 4.131 25 C -0.060 4.060 26 H 0.080 0.920 27 H 0.064 0.936 28 H 0.059 0.941 29 H 0.052 0.948 30 H 0.045 0.955 31 H 0.051 0.949 32 H 0.055 0.945 33 H -0.002 1.002 34 H -0.004 1.004 35 H 0.265 0.735 36 H 0.119 0.881 37 H 0.143 0.857 38 H 0.155 0.845 39 H 0.152 0.848 40 H 0.150 0.850 41 H 0.145 0.855 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.101 -2.225 27.029 27.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.063 3.937 3 H 0.090 0.910 4 O -0.312 6.312 5 C -0.002 4.002 6 C -0.133 4.133 7 C -0.009 4.009 8 C -0.583 4.583 9 H 0.077 0.923 10 C -0.198 4.198 11 N -0.572 5.572 12 Si 0.791 3.209 13 H -0.196 1.196 14 H -0.205 1.205 15 H -0.189 1.189 16 C -0.091 4.091 17 C -0.125 4.125 18 C -0.142 4.142 19 C -0.125 4.125 20 C -0.074 4.074 21 C -0.126 4.126 22 C -0.141 4.141 23 C -0.133 4.133 24 C -0.149 4.149 25 C -0.060 4.060 26 H 0.099 0.901 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.016 0.984 34 H 0.014 0.986 35 H 0.074 0.926 36 H 0.137 0.863 37 H 0.161 0.839 38 H 0.173 0.827 39 H 0.170 0.830 40 H 0.168 0.832 41 H 0.162 0.838 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -4.056 -2.281 26.904 27.303 hybrid contribution 0.226 0.045 -1.298 1.318 sum -3.830 -2.236 25.606 25.987 Atomic orbital electron populations 1.22206 0.93725 1.03013 1.02974 1.20899 0.94550 0.95139 0.83089 0.90975 1.87868 1.86813 1.36222 1.20296 1.22528 0.99302 0.92761 0.85598 1.21380 1.00181 0.98539 0.93159 1.18914 0.95251 0.94473 0.92218 1.21650 1.44444 0.95180 0.97057 0.92295 1.25979 0.95664 0.96120 1.01997 1.70085 1.49994 1.10782 1.26370 0.85423 0.78511 0.78545 0.78443 1.19616 1.20527 1.18878 1.19670 1.01032 0.94914 0.93435 1.20867 0.98090 0.94424 0.99166 1.21131 0.99379 1.01230 0.92482 1.21368 0.99222 0.93111 0.98828 1.18396 1.00305 0.94823 0.93850 1.21353 0.99459 0.95150 0.96641 1.21230 0.98549 0.94812 0.99484 1.21210 0.98400 1.01191 0.92467 1.21253 1.01054 0.93199 0.99353 1.18051 1.00497 0.94605 0.92829 0.90115 0.91732 0.92163 0.92948 0.93632 0.92998 0.92605 0.98374 0.98602 0.92637 0.86258 0.83873 0.82725 0.83008 0.83190 0.83755 0.85244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.88 9.51 71.98 0.68 -3.19 16 2 C 0.12 3.37 2.34 29.85 0.07 3.44 16 3 H 0.07 1.92 6.35 -2.39 -0.02 1.91 16 4 O -0.39 -13.47 8.80 -148.98 -1.31 -14.78 16 5 C 0.07 2.74 5.75 71.98 0.41 3.16 16 6 C -0.09 -4.18 5.52 30.59 0.17 -4.02 16 7 C 0.03 1.55 4.97 29.85 0.15 1.69 16 8 C -0.55 -31.85 9.11 25.60 0.23 -31.62 16 9 H 0.06 3.33 7.74 -2.91 -0.02 3.30 16 10 C 0.00 0.01 5.46 84.65 0.46 0.48 16 11 N -0.93 -57.17 13.29 21.45 0.28 -56.88 16 12 Si 0.97 44.85 29.54 68.60 2.03 46.87 16 13 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 14 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 15 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 16 C -0.09 -2.47 5.08 -19.80 -0.10 -2.57 16 17 C -0.11 -2.88 9.28 22.04 0.20 -2.68 16 18 C -0.12 -2.66 9.95 22.04 0.22 -2.45 16 19 C -0.11 -2.05 9.77 22.33 0.22 -1.83 16 20 C -0.07 -1.58 5.74 -21.30 -0.12 -1.70 16 21 C -0.11 -1.74 9.77 22.33 0.22 -1.52 16 22 C -0.12 -1.78 9.95 22.04 0.22 -1.57 16 23 C -0.11 -1.90 9.95 22.05 0.22 -1.68 16 24 C -0.13 -2.75 9.19 22.33 0.21 -2.55 16 25 C -0.06 -1.47 5.74 -21.30 -0.12 -1.59 16 26 H 0.08 1.63 8.05 -2.39 -0.02 1.61 16 27 H 0.06 1.53 7.87 -2.39 -0.02 1.51 16 28 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 29 H 0.05 1.84 7.87 -2.39 -0.02 1.82 16 30 H 0.05 1.65 8.08 -2.39 -0.02 1.63 16 31 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 32 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 33 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 34 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 35 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 36 H 0.12 3.42 7.29 -2.91 -0.02 3.40 16 37 H 0.14 2.34 8.06 -2.91 -0.02 2.32 16 38 H 0.16 1.89 8.06 -2.91 -0.02 1.87 16 39 H 0.15 1.52 8.06 -2.91 -0.02 1.50 16 40 H 0.15 1.26 8.06 -2.91 -0.02 1.23 16 41 H 0.14 1.64 8.06 -2.91 -0.02 1.62 16 42 H 0.13 2.51 6.49 -2.91 -0.02 2.49 16 Total: -1.00 -68.33 349.05 5.32 -63.01 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: 0.98 Total: 11.98 kcal Atomic # 6 Polarization: -53.53 SS G_CDS: 3.34 Total: -50.19 kcal Atomic # 7 Polarization: -57.17 SS G_CDS: 0.28 Total: -56.88 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: -1.31 Total: -14.78 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.87 kcal Total: -68.33 5.32 -63.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205665180.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.856 kcal (2) G-P(sol) polarization free energy of solvation -68.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds