Wall clock time and date at job start Tue Mar 31 2020 05:39:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53004 * 109.46960 * 2 1 4 4 C 1.52999 * 109.46732 * 180.02562 * 3 2 1 5 5 N 1.46900 * 109.46937 * 184.48319 * 4 3 2 6 6 C 1.46904 * 111.00277 * 302.32029 * 5 4 3 7 7 C 1.50699 * 109.46623 * 297.28196 * 6 5 4 8 8 H 1.08002 * 120.00234 * 354.94908 * 7 6 5 9 9 C 1.37879 * 119.99679 * 174.95078 * 7 6 5 10 10 N 1.31522 * 119.99997 * 179.97438 * 9 7 6 11 11 Si 1.86801 * 120.00269 * 359.97438 * 9 7 6 12 12 H 1.48505 * 109.46687 * 89.99760 * 11 9 7 13 13 H 1.48495 * 109.47017 * 210.00026 * 11 9 7 14 14 H 1.48501 * 109.46947 * 330.00058 * 11 9 7 15 15 C 1.46906 * 110.99681 * 66.26905 * 5 4 3 16 16 C 1.50702 * 109.46838 * 66.04693 * 15 5 4 17 17 C 1.38824 * 120.80743 * 89.99831 * 16 15 5 18 18 F 1.35093 * 120.43258 * 0.25263 * 17 16 15 19 19 C 1.38451 * 119.13378 * 179.97438 * 17 16 15 20 20 N 1.31844 * 120.78753 * 359.97438 * 19 17 16 21 21 C 1.31841 * 121.77548 * 0.02562 * 20 19 17 22 22 C 1.38463 * 120.78153 * 0.02562 * 21 20 19 23 23 F 1.35101 * 120.43029 * 179.97438 * 22 21 20 24 24 H 1.09005 * 109.47142 * 299.99988 * 1 2 3 25 25 H 1.08997 * 109.47252 * 59.99775 * 1 2 3 26 26 H 1.08997 * 109.47189 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46546 * 239.99894 * 2 1 3 28 28 H 1.08997 * 109.47252 * 120.00225 * 2 1 3 29 29 H 1.08996 * 109.47132 * 60.00236 * 3 2 1 30 30 H 1.08998 * 109.46844 * 300.00412 * 3 2 1 31 31 H 1.08999 * 109.46843 * 64.48649 * 4 3 2 32 32 H 1.08998 * 109.46995 * 304.48458 * 4 3 2 33 33 H 1.08997 * 109.47083 * 57.28019 * 6 5 4 34 34 H 1.09000 * 109.47002 * 177.28395 * 6 5 4 35 35 H 0.96995 * 119.99913 * 180.02562 * 10 9 7 36 36 H 1.08995 * 109.47475 * 306.04346 * 15 5 4 37 37 H 1.09002 * 109.46744 * 186.04237 * 15 5 4 38 38 H 1.08003 * 119.60844 * 179.97438 * 19 17 16 39 39 H 1.08001 * 119.61353 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0598 2.8232 0.1076 6 6 3.5435 3.6525 -0.9896 7 6 4.0524 3.1197 -2.3042 8 1 4.7593 2.3033 -2.3187 9 6 3.6155 3.6746 -3.4884 10 7 4.0600 3.2100 -4.6357 11 14 2.3924 5.0862 -3.4633 12 1 3.1264 6.3764 -3.4177 13 1 1.5541 5.0366 -4.6880 14 1 1.5244 4.9678 -2.2641 15 6 3.7154 3.4031 1.4127 16 6 4.4607 2.6720 2.4996 17 6 5.7173 3.0965 2.9092 18 9 6.2926 4.1790 2.3416 19 6 6.3708 2.3994 3.9111 20 7 5.8133 1.3455 4.4740 21 6 4.6218 0.9134 4.1111 22 6 3.9073 1.5578 3.1154 23 9 2.6871 1.1086 2.7486 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6766 1.9563 -0.8899 31 1 3.9329 1.0000 -0.9283 32 1 3.9337 0.8605 0.8462 33 1 2.4539 3.6254 -0.9838 34 1 3.8821 4.6803 -0.8585 35 1 3.7530 3.6006 -5.4687 36 1 2.6426 3.3083 1.5808 37 1 3.9937 4.4568 1.4269 38 1 7.3489 2.7227 4.2355 39 1 4.1983 0.0460 4.5955 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206859058.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:00 Heat of formation + Delta-G solvation = -55.077346 kcal Electronic energy + Delta-G solvation = -23308.313026 eV Core-core repulsion = 19694.025395 eV Total energy + Delta-G solvation = -3614.287631 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.140 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.14592 -48.98323 -40.08719 -37.83897 -34.21690 -33.15222 -32.02324 -30.76842 -28.61107 -28.12729 -25.48677 -23.70839 -23.34869 -22.08686 -21.19080 -19.40986 -18.18879 -18.11665 -16.97329 -16.56623 -16.33688 -15.92513 -15.45197 -14.97505 -14.88146 -14.64561 -14.14763 -14.10640 -13.75195 -13.50362 -13.22781 -12.93654 -12.54762 -12.50845 -12.43103 -12.14265 -11.47017 -11.33530 -11.09576 -10.81783 -10.70149 -10.55123 -10.46069 -10.08801 -9.90994 -9.84080 -9.54980 -9.30320 -9.01986 -8.60591 -7.45282 -6.08725 -4.06480 0.63152 0.77155 3.24898 3.28516 3.32537 3.33258 3.69396 3.96350 4.20293 4.37735 4.39182 4.46506 4.80497 4.95989 5.22945 5.26029 5.29864 5.35745 5.50053 5.53905 5.62334 5.72905 5.77095 5.85383 6.05780 6.10319 6.16860 6.22559 6.39801 6.42065 6.51799 6.58091 6.82530 6.94033 6.99530 7.48520 7.50111 7.75346 7.91878 8.59051 8.99441 9.52243 11.04229 Molecular weight = 284.14amu Principal moments of inertia in cm(-1) A = 0.015601 B = 0.006320 C = 0.004922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1794.325490 B = 4429.359134 C = 5686.972628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.116 4.116 3 C -0.154 4.154 4 C 0.064 3.936 5 N -0.517 5.517 6 C 0.159 3.841 7 C -0.507 4.507 8 H 0.081 0.919 9 C 0.071 3.929 10 N -0.898 5.898 11 Si 0.871 3.129 12 H -0.275 1.275 13 H -0.286 1.286 14 H -0.267 1.267 15 C 0.080 3.920 16 C -0.093 4.093 17 C 0.100 3.900 18 F -0.113 7.113 19 C 0.057 3.943 20 N -0.435 5.435 21 C 0.057 3.943 22 C 0.083 3.917 23 F -0.115 7.115 24 H 0.048 0.952 25 H 0.053 0.947 26 H 0.048 0.952 27 H 0.061 0.939 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.049 0.951 33 H 0.000 1.000 34 H 0.024 0.976 35 H 0.264 0.736 36 H 0.053 0.947 37 H 0.088 0.912 38 H 0.173 0.827 39 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.125 -3.306 17.078 17.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.154 4.154 3 C -0.193 4.193 4 C -0.064 4.064 5 N -0.240 5.240 6 C 0.033 3.967 7 C -0.545 4.545 8 H 0.099 0.901 9 C -0.131 4.131 10 N -0.537 5.537 11 Si 0.698 3.302 12 H -0.201 1.201 13 H -0.212 1.212 14 H -0.192 1.192 15 C -0.048 4.048 16 C -0.103 4.103 17 C 0.077 3.923 18 F -0.091 7.091 19 C -0.101 4.101 20 N -0.143 5.143 21 C -0.102 4.102 22 C 0.061 3.939 23 F -0.093 7.093 24 H 0.067 0.933 25 H 0.072 0.928 26 H 0.067 0.933 27 H 0.080 0.920 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.092 0.908 31 H 0.107 0.893 32 H 0.067 0.933 33 H 0.018 0.982 34 H 0.042 0.958 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.107 0.893 38 H 0.190 0.810 39 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -1.192 -3.683 17.437 17.862 hybrid contribution -2.092 1.386 -0.984 2.696 sum -3.284 -2.297 16.453 16.934 Atomic orbital electron populations 1.21755 0.96579 1.00820 1.01490 1.21392 0.95213 0.97268 1.01511 1.22216 0.98233 0.96803 1.02017 1.22113 0.92204 0.90082 1.01987 1.62330 1.59151 1.02763 0.99730 1.20278 0.93666 0.92903 0.89863 1.20946 1.26601 1.19362 0.87610 0.90115 1.24866 0.96152 0.96635 0.95430 1.69886 1.44350 1.42107 0.97382 0.86932 0.82040 0.83480 0.77756 1.20113 1.21170 1.19207 1.20995 0.96744 0.98312 0.88699 1.20638 0.94937 0.96159 0.98581 1.18421 0.91663 0.87221 0.94981 1.91575 1.83354 1.50857 1.83343 1.22941 1.01094 0.92355 0.93741 1.67721 1.09699 1.11532 1.25332 1.22895 0.91203 1.00684 0.95417 1.18498 0.83265 0.94860 0.97275 1.91570 1.39615 1.87815 1.90304 0.93296 0.92824 0.93328 0.91988 0.92615 0.92766 0.90779 0.89266 0.93303 0.98238 0.95835 0.92629 0.92946 0.89324 0.80953 0.81106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.91 37.16 0.37 -1.60 16 2 C -0.12 -1.72 5.93 -26.73 -0.16 -1.88 16 3 C -0.15 -2.67 3.68 -26.73 -0.10 -2.77 16 4 C 0.06 1.21 4.53 -3.82 -0.02 1.20 16 5 N -0.52 -10.52 4.72 -237.51 -1.12 -11.64 16 6 C 0.16 3.72 3.46 -4.97 -0.02 3.70 16 7 C -0.51 -14.02 8.97 -34.44 -0.31 -14.33 16 8 H 0.08 2.45 7.31 -52.49 -0.38 2.07 16 9 C 0.07 2.01 5.47 -17.82 -0.10 1.92 16 10 N -0.90 -27.13 13.96 55.43 0.77 -26.36 16 11 Si 0.87 21.12 27.57 -169.99 -4.69 16.43 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 13 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 14 H -0.27 -6.21 6.40 56.52 0.36 -5.85 16 15 C 0.08 1.35 4.70 -4.97 -0.02 1.33 16 16 C -0.09 -1.37 4.92 -104.19 -0.51 -1.88 16 17 C 0.10 1.37 7.29 -39.29 -0.29 1.08 16 18 F -0.11 -1.69 16.61 2.25 0.04 -1.65 16 19 C 0.06 0.66 11.17 -17.47 -0.20 0.47 16 20 N -0.44 -5.21 10.36 -13.14 -0.14 -5.35 16 21 C 0.06 0.64 11.17 -17.46 -0.20 0.44 16 22 C 0.08 1.09 5.95 -39.29 -0.23 0.85 16 23 F -0.11 -1.54 13.06 2.25 0.03 -1.51 16 24 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 28 H 0.06 0.77 7.82 -51.93 -0.41 0.36 16 29 H 0.05 0.90 5.05 -51.93 -0.26 0.64 16 30 H 0.07 1.49 6.56 -51.93 -0.34 1.15 16 31 H 0.09 1.93 6.81 -51.93 -0.35 1.57 16 32 H 0.05 0.85 5.38 -51.93 -0.28 0.57 16 33 H 0.00 0.00 4.91 -51.93 -0.25 -0.26 16 34 H 0.02 0.56 7.68 -51.93 -0.40 0.16 16 35 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 36 H 0.05 0.85 5.75 -51.93 -0.30 0.55 16 37 H 0.09 1.46 7.56 -51.93 -0.39 1.07 16 38 H 0.17 1.49 8.06 -52.48 -0.42 1.07 16 39 H 0.17 1.42 8.06 -52.49 -0.42 1.00 16 LS Contribution 315.86 15.07 4.76 4.76 Total: -1.00 -29.88 315.86 -7.20 -37.08 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: -5.08 Total: -0.30 kcal Atomic # 6 Polarization: -9.70 SS G_CDS: -1.78 Total: -11.47 kcal Atomic # 7 Polarization: -42.87 SS G_CDS: -0.48 Total: -43.35 kcal Atomic # 9 Polarization: -3.22 SS G_CDS: 0.07 Total: -3.15 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.69 Total: 16.43 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -29.88 -7.20 -37.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206859058.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.999 kcal (2) G-P(sol) polarization free energy of solvation -29.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds