Wall clock time and date at job start Tue Mar 31 2020 05:39:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53004 * 109.46960 * 2 1 4 4 C 1.52999 * 109.46732 * 180.02562 * 3 2 1 5 5 N 1.46900 * 109.46937 * 184.48319 * 4 3 2 6 6 C 1.46904 * 111.00277 * 302.32029 * 5 4 3 7 7 C 1.50699 * 109.46623 * 297.28196 * 6 5 4 8 8 H 1.08002 * 120.00234 * 354.94908 * 7 6 5 9 9 C 1.37879 * 119.99679 * 174.95078 * 7 6 5 10 10 N 1.31522 * 119.99997 * 179.97438 * 9 7 6 11 11 Si 1.86801 * 120.00269 * 359.97438 * 9 7 6 12 12 H 1.48505 * 109.46687 * 89.99760 * 11 9 7 13 13 H 1.48495 * 109.47017 * 210.00026 * 11 9 7 14 14 H 1.48501 * 109.46947 * 330.00058 * 11 9 7 15 15 C 1.46906 * 110.99681 * 66.26905 * 5 4 3 16 16 C 1.50702 * 109.46838 * 66.04693 * 15 5 4 17 17 C 1.38824 * 120.80743 * 89.99831 * 16 15 5 18 18 F 1.35093 * 120.43258 * 0.25263 * 17 16 15 19 19 C 1.38451 * 119.13378 * 179.97438 * 17 16 15 20 20 N 1.31844 * 120.78753 * 359.97438 * 19 17 16 21 21 C 1.31841 * 121.77548 * 0.02562 * 20 19 17 22 22 C 1.38463 * 120.78153 * 0.02562 * 21 20 19 23 23 F 1.35101 * 120.43029 * 179.97438 * 22 21 20 24 24 H 1.09005 * 109.47142 * 299.99988 * 1 2 3 25 25 H 1.08997 * 109.47252 * 59.99775 * 1 2 3 26 26 H 1.08997 * 109.47189 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46546 * 239.99894 * 2 1 3 28 28 H 1.08997 * 109.47252 * 120.00225 * 2 1 3 29 29 H 1.08996 * 109.47132 * 60.00236 * 3 2 1 30 30 H 1.08998 * 109.46844 * 300.00412 * 3 2 1 31 31 H 1.08999 * 109.46843 * 64.48649 * 4 3 2 32 32 H 1.08998 * 109.46995 * 304.48458 * 4 3 2 33 33 H 1.08997 * 109.47083 * 57.28019 * 6 5 4 34 34 H 1.09000 * 109.47002 * 177.28395 * 6 5 4 35 35 H 0.96995 * 119.99913 * 180.02562 * 10 9 7 36 36 H 1.08995 * 109.47475 * 306.04346 * 15 5 4 37 37 H 1.09002 * 109.46744 * 186.04237 * 15 5 4 38 38 H 1.08003 * 119.60844 * 179.97438 * 19 17 16 39 39 H 1.08001 * 119.61353 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0598 2.8232 0.1076 6 6 3.5435 3.6525 -0.9896 7 6 4.0524 3.1197 -2.3042 8 1 4.7593 2.3033 -2.3187 9 6 3.6155 3.6746 -3.4884 10 7 4.0600 3.2100 -4.6357 11 14 2.3924 5.0862 -3.4633 12 1 3.1264 6.3764 -3.4177 13 1 1.5541 5.0366 -4.6880 14 1 1.5244 4.9678 -2.2641 15 6 3.7154 3.4031 1.4127 16 6 4.4607 2.6720 2.4996 17 6 5.7173 3.0965 2.9092 18 9 6.2926 4.1790 2.3416 19 6 6.3708 2.3994 3.9111 20 7 5.8133 1.3455 4.4740 21 6 4.6218 0.9134 4.1111 22 6 3.9073 1.5578 3.1154 23 9 2.6871 1.1086 2.7486 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6766 1.9563 -0.8899 31 1 3.9329 1.0000 -0.9283 32 1 3.9337 0.8605 0.8462 33 1 2.4539 3.6254 -0.9838 34 1 3.8821 4.6803 -0.8585 35 1 3.7530 3.6006 -5.4687 36 1 2.6426 3.3083 1.5808 37 1 3.9937 4.4568 1.4269 38 1 7.3489 2.7227 4.2355 39 1 4.1983 0.0460 4.5955 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206859058.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:00 Heat of formation + Delta-G solvation = -74.152108 kcal Electronic energy + Delta-G solvation = -23309.140169 eV Core-core repulsion = 19694.025395 eV Total energy + Delta-G solvation = -3615.114775 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.140 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -50.16278 -50.07299 -41.09559 -39.34601 -35.47565 -34.95530 -33.59552 -31.71834 -30.27767 -29.58602 -26.92301 -25.04706 -24.51525 -23.53043 -22.48436 -21.01203 -19.23882 -19.16054 -18.95249 -17.66633 -17.52069 -16.99987 -16.60920 -16.58774 -16.15541 -16.12880 -15.79275 -15.39877 -14.86867 -14.69847 -14.52647 -14.20149 -14.08623 -14.03864 -13.64617 -13.38245 -13.09741 -12.82803 -12.49995 -12.47408 -12.32543 -12.00134 -11.92450 -11.79136 -11.45369 -11.31222 -10.96103 -10.79658 -10.67634 -9.97104 -9.06102 -8.29265 -6.32331 -0.32111 -0.27525 1.32566 1.33247 1.43008 2.31652 2.32139 2.70023 2.97230 3.04313 3.11455 3.31614 3.40535 3.51711 3.93795 3.98249 4.02811 4.23692 4.27519 4.35949 4.43000 4.54398 4.61551 4.68237 4.73772 4.77192 4.83059 4.93043 5.01912 5.07034 5.15248 5.30542 5.40843 5.43739 5.47390 5.52589 5.90000 6.23423 6.55020 6.55261 6.73019 7.30618 8.87272 Molecular weight = 284.14amu Principal moments of inertia in cm(-1) A = 0.015601 B = 0.006320 C = 0.004922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1794.325490 B = 4429.359134 C = 5686.972628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.113 4.113 3 C -0.144 4.144 4 C 0.072 3.928 5 N -0.535 5.535 6 C 0.170 3.830 7 C -0.509 4.509 8 H 0.036 0.964 9 C 0.012 3.988 10 N -0.947 5.947 11 Si 0.940 3.060 12 H -0.266 1.266 13 H -0.282 1.282 14 H -0.249 1.249 15 C 0.084 3.916 16 C -0.110 4.110 17 C 0.083 3.917 18 F -0.125 7.125 19 C 0.071 3.929 20 N -0.440 5.440 21 C 0.073 3.927 22 C 0.077 3.923 23 F -0.117 7.117 24 H 0.059 0.941 25 H 0.042 0.958 26 H 0.068 0.932 27 H 0.048 0.952 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.042 0.958 31 H 0.050 0.950 32 H 0.068 0.932 33 H 0.004 0.996 34 H 0.025 0.975 35 H 0.266 0.734 36 H 0.060 0.940 37 H 0.088 0.912 38 H 0.202 0.798 39 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.214 -3.318 19.766 20.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.151 4.151 3 C -0.182 4.182 4 C -0.056 4.056 5 N -0.258 5.258 6 C 0.044 3.956 7 C -0.548 4.548 8 H 0.054 0.946 9 C -0.185 4.185 10 N -0.587 5.587 11 Si 0.763 3.237 12 H -0.191 1.191 13 H -0.208 1.208 14 H -0.173 1.173 15 C -0.043 4.043 16 C -0.120 4.120 17 C 0.060 3.940 18 F -0.104 7.104 19 C -0.087 4.087 20 N -0.148 5.148 21 C -0.086 4.086 22 C 0.054 3.946 23 F -0.096 7.096 24 H 0.078 0.922 25 H 0.061 0.939 26 H 0.087 0.913 27 H 0.067 0.933 28 H 0.091 0.909 29 H 0.085 0.915 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.086 0.914 33 H 0.021 0.979 34 H 0.043 0.957 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.106 0.894 38 H 0.219 0.781 39 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -2.278 -3.702 20.155 20.618 hybrid contribution -1.644 1.284 -1.749 2.723 sum -3.922 -2.418 18.406 18.974 Atomic orbital electron populations 1.21726 0.94935 1.02166 1.01472 1.21377 0.96649 0.95377 1.01717 1.22094 0.96768 0.98438 1.00948 1.21978 0.93404 0.89463 1.00723 1.62155 1.59830 1.03053 1.00739 1.19995 0.93531 0.93051 0.89043 1.21131 1.25524 1.18047 0.90064 0.94560 1.25760 0.98296 0.99627 0.94827 1.70043 1.46331 1.44114 0.98251 0.85828 0.79623 0.79777 0.78454 1.19105 1.20798 1.17259 1.20930 0.97578 0.98494 0.87318 1.20554 0.95594 0.97184 0.98692 1.18634 0.91741 0.87556 0.96023 1.91543 1.83530 1.51543 1.83743 1.23369 1.01732 0.91355 0.92217 1.67863 1.09990 1.11565 1.25348 1.23405 0.90455 1.00688 0.94028 1.18583 0.83404 0.94670 0.97893 1.91556 1.39781 1.87781 1.90435 0.92220 0.93928 0.91343 0.93285 0.90895 0.91454 0.93940 0.93139 0.91383 0.97883 0.95717 0.92474 0.92230 0.89394 0.78082 0.77800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.57 9.91 71.98 0.71 -2.85 16 2 C -0.11 -3.24 5.93 30.60 0.18 -3.06 16 3 C -0.14 -4.94 3.68 30.60 0.11 -4.83 16 4 C 0.07 2.78 4.53 86.30 0.39 3.17 16 5 N -0.53 -22.02 4.72 -905.35 -4.27 -26.29 16 6 C 0.17 8.09 3.46 85.56 0.30 8.38 16 7 C -0.51 -29.34 8.97 25.60 0.23 -29.11 16 8 H 0.04 2.35 7.31 -2.91 -0.02 2.33 16 9 C 0.01 0.72 5.47 84.65 0.46 1.18 16 10 N -0.95 -59.24 13.96 21.45 0.30 -58.94 16 11 Si 0.94 43.87 27.57 68.60 1.89 45.76 16 12 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 13 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 14 H -0.25 -10.78 6.40 99.48 0.64 -10.15 16 15 C 0.08 2.76 4.70 85.56 0.40 3.17 16 16 C -0.11 -3.08 4.92 -19.59 -0.10 -3.18 16 17 C 0.08 2.15 7.29 22.46 0.16 2.32 16 18 F -0.13 -3.66 16.61 44.97 0.75 -2.91 16 19 C 0.07 1.46 11.17 84.74 0.95 2.41 16 20 N -0.44 -9.10 10.36 -195.48 -2.02 -11.13 16 21 C 0.07 1.38 11.17 84.74 0.95 2.33 16 22 C 0.08 1.81 5.95 22.46 0.13 1.95 16 23 F -0.12 -2.82 13.06 44.97 0.59 -2.23 16 24 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 25 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.07 1.85 7.82 -2.39 -0.02 1.83 16 29 H 0.07 2.13 5.05 -2.39 -0.01 2.12 16 30 H 0.04 1.72 6.56 -2.39 -0.02 1.71 16 31 H 0.05 2.31 6.81 -2.39 -0.02 2.29 16 32 H 0.07 2.33 5.38 -2.39 -0.01 2.31 16 33 H 0.00 0.17 4.91 -2.39 -0.01 0.15 16 34 H 0.02 1.17 7.68 -2.39 -0.02 1.15 16 35 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 36 H 0.06 1.85 5.75 -2.39 -0.01 1.84 16 37 H 0.09 2.85 7.56 -2.39 -0.02 2.84 16 38 H 0.20 2.83 8.06 -2.91 -0.02 2.81 16 39 H 0.21 2.46 8.06 -2.91 -0.02 2.43 16 Total: -1.00 -66.73 315.86 3.11 -63.63 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: 1.00 Total: 10.24 kcal Atomic # 6 Polarization: -23.01 SS G_CDS: 4.88 Total: -18.13 kcal Atomic # 7 Polarization: -90.36 SS G_CDS: -6.00 Total: -96.36 kcal Atomic # 9 Polarization: -6.48 SS G_CDS: 1.33 Total: -5.14 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 1.89 Total: 45.76 kcal Total: -66.73 3.11 -63.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206859058.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.525 kcal (2) G-P(sol) polarization free energy of solvation -66.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds