Wall clock time and date at job start Tue Mar 31 2020 05:38:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47371 * 2 1 4 4 C 1.53006 * 109.46865 * 179.97438 * 3 2 1 5 5 N 1.46902 * 109.46491 * 179.53864 * 4 3 2 6 6 C 1.46900 * 111.00421 * 297.09497 * 5 4 3 7 7 C 1.50699 * 109.47016 * 288.61028 * 6 5 4 8 8 H 1.08006 * 120.00292 * 1.06445 * 7 6 5 9 9 C 1.37877 * 120.00110 * 181.06876 * 7 6 5 10 10 N 1.31519 * 120.00498 * 179.97438 * 9 7 6 11 11 Si 1.86799 * 119.99822 * 359.97438 * 9 7 6 12 12 H 1.48506 * 109.47161 * 90.00011 * 11 9 7 13 13 H 1.48501 * 109.47208 * 209.99895 * 11 9 7 14 14 H 1.48504 * 109.47240 * 330.00109 * 11 9 7 15 15 C 1.46901 * 111.00172 * 61.05384 * 5 4 3 16 16 C 1.50697 * 109.47229 * 66.04100 * 15 5 4 17 17 N 1.31856 * 119.60863 * 270.02535 * 16 15 5 18 18 C 1.31836 * 121.77682 * 179.97438 * 17 16 15 19 19 C 1.38483 * 120.77985 * 359.97438 * 18 17 16 20 20 F 1.35101 * 120.43087 * 180.02562 * 19 18 17 21 21 C 1.38798 * 119.13734 * 0.02562 * 19 18 17 22 22 C 1.38436 * 119.60755 * 89.99894 * 16 15 5 23 23 F 1.35101 * 120.43020 * 359.74995 * 22 16 15 24 24 H 1.09004 * 109.47109 * 300.00405 * 1 2 3 25 25 H 1.08997 * 109.46674 * 59.99932 * 1 2 3 26 26 H 1.08999 * 109.47197 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47109 * 239.99594 * 2 1 3 28 28 H 1.09003 * 109.46947 * 119.99769 * 2 1 3 29 29 H 1.08996 * 109.47335 * 59.99979 * 3 2 1 30 30 H 1.09003 * 109.46896 * 299.99800 * 3 2 1 31 31 H 1.08998 * 109.47020 * 59.54362 * 4 3 2 32 32 H 1.09000 * 109.47009 * 299.53371 * 4 3 2 33 33 H 1.08996 * 109.46864 * 48.60630 * 6 5 4 34 34 H 1.08999 * 109.47419 * 168.60934 * 6 5 4 35 35 H 0.96995 * 120.00076 * 180.02562 * 10 9 7 36 36 H 1.08996 * 109.46808 * 306.04261 * 15 5 4 37 37 H 1.08995 * 109.46854 * 186.04187 * 15 5 4 38 38 H 1.07998 * 119.61234 * 179.97438 * 18 17 16 39 39 H 1.07997 * 120.80390 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4423 0.0006 5 7 4.0598 2.8273 -0.0105 6 6 3.6469 3.5219 -1.2373 7 6 4.4253 2.9792 -2.4080 8 1 5.1416 2.1847 -2.2587 9 6 4.2233 3.4970 -3.6698 10 7 4.9030 3.0238 -4.6915 11 14 2.9842 4.8707 -3.9282 12 1 3.6598 6.1835 -3.7681 13 1 2.4130 4.7715 -5.2954 14 1 1.8945 4.7494 -2.9265 15 6 3.6090 3.5547 1.1835 16 6 4.2518 2.9570 2.4084 17 7 3.6485 1.9734 3.0465 18 6 4.1723 1.4189 4.1218 19 6 5.3874 1.8546 4.6234 20 9 5.9179 1.2810 5.7255 21 6 6.0529 2.8882 3.9791 22 6 5.4689 3.4467 2.8501 23 9 6.0835 4.4510 2.1876 24 1 -0.3633 0.5139 0.8900 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6768 1.9563 0.8899 30 1 1.6768 1.9563 -0.8900 31 1 3.9338 0.9213 -0.8850 32 1 3.9330 0.9358 0.8950 33 1 2.5816 3.3624 -1.4041 34 1 3.8428 4.5891 -1.1341 35 1 4.7611 3.3884 -5.5790 36 1 2.5250 3.4780 1.2679 37 1 3.8935 4.6035 1.0989 38 1 3.6477 0.6155 4.6174 39 1 7.0018 3.2494 4.3473 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207098270.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:54 Heat of formation + Delta-G solvation = -54.772403 kcal Electronic energy + Delta-G solvation = -22700.302107 eV Core-core repulsion = 19086.027699 eV Total energy + Delta-G solvation = -3614.274408 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.140 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.24508 -48.98232 -40.22757 -37.58174 -34.03239 -32.78244 -32.32960 -31.26146 -28.61024 -27.75493 -25.31992 -23.98996 -23.31574 -22.05261 -21.17161 -19.36978 -18.29599 -18.13872 -16.83675 -16.41782 -16.28399 -15.77591 -15.51616 -15.20209 -14.89631 -14.53723 -14.44363 -14.13671 -13.64055 -13.42276 -13.14747 -13.02592 -12.58298 -12.43436 -12.32207 -12.09638 -11.48774 -11.26584 -11.05597 -10.78455 -10.63744 -10.52187 -10.45175 -10.00517 -9.95781 -9.81710 -9.77640 -9.30248 -8.86973 -8.55123 -7.36805 -6.03966 -4.00732 0.61272 0.75384 3.26185 3.28686 3.36349 3.37004 3.58856 3.97342 4.12293 4.38468 4.42251 4.48045 4.88570 5.00871 5.28137 5.28961 5.32779 5.35813 5.45407 5.52379 5.57454 5.78296 5.86000 5.89908 6.10117 6.12446 6.20453 6.25566 6.39673 6.43246 6.55311 6.60196 6.83438 6.95524 7.05027 7.56705 7.60013 7.84604 7.97813 8.65196 9.05456 9.57413 11.09300 Molecular weight = 284.14amu Principal moments of inertia in cm(-1) A = 0.015666 B = 0.005377 C = 0.004353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.849230 B = 5206.056740 C = 6430.758567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.115 4.115 3 C -0.154 4.154 4 C 0.066 3.934 5 N -0.518 5.518 6 C 0.159 3.841 7 C -0.504 4.504 8 H 0.080 0.920 9 C 0.069 3.931 10 N -0.900 5.900 11 Si 0.872 3.128 12 H -0.276 1.276 13 H -0.286 1.286 14 H -0.267 1.267 15 C 0.091 3.909 16 C 0.115 3.885 17 N -0.421 5.421 18 C 0.063 3.937 19 C 0.068 3.932 20 F -0.127 7.127 21 C -0.152 4.152 22 C 0.103 3.897 23 F -0.111 7.111 24 H 0.049 0.951 25 H 0.051 0.949 26 H 0.047 0.953 27 H 0.060 0.940 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.084 0.916 32 H 0.058 0.942 33 H 0.001 0.999 34 H 0.023 0.977 35 H 0.263 0.737 36 H 0.059 0.941 37 H 0.089 0.911 38 H 0.172 0.828 39 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.539 -2.111 18.099 18.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.154 4.154 3 C -0.193 4.193 4 C -0.063 4.063 5 N -0.241 5.241 6 C 0.034 3.966 7 C -0.542 4.542 8 H 0.098 0.902 9 C -0.132 4.132 10 N -0.540 5.540 11 Si 0.699 3.301 12 H -0.202 1.202 13 H -0.212 1.212 14 H -0.192 1.192 15 C -0.038 4.038 16 C -0.024 4.024 17 N -0.128 5.128 18 C -0.096 4.096 19 C 0.046 3.954 20 F -0.106 7.106 21 C -0.179 4.179 22 C 0.080 3.920 23 F -0.089 7.089 24 H 0.068 0.932 25 H 0.071 0.929 26 H 0.066 0.934 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.102 0.898 32 H 0.076 0.924 33 H 0.018 0.982 34 H 0.041 0.959 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.107 0.893 38 H 0.189 0.811 39 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -3.749 -2.363 17.583 18.133 hybrid contribution -0.322 1.137 0.173 1.195 sum -4.071 -1.226 17.757 18.258 Atomic orbital electron populations 1.21760 0.96646 1.00795 1.01459 1.21381 0.95091 0.97348 1.01547 1.22198 0.98509 0.96755 1.01849 1.22084 0.91946 0.90341 1.01880 1.62270 1.58772 1.02175 1.00869 1.20271 0.94986 0.93957 0.87424 1.20965 1.22773 1.20785 0.89674 0.90204 1.24865 0.95793 0.96598 0.95953 1.69888 1.41529 1.42759 0.99777 0.86918 0.82347 0.83186 0.77648 1.20166 1.21241 1.19225 1.21046 0.97874 0.97763 0.87117 1.21627 0.91071 0.92826 0.96924 1.67714 1.32634 1.06852 1.05637 1.22970 0.92287 1.00484 0.93854 1.18508 0.94749 0.95435 0.86682 1.91535 1.85988 1.83094 1.49933 1.21632 1.02573 0.97536 0.96147 1.18253 0.92627 0.89199 0.91905 1.91592 1.81706 1.56575 1.79061 0.93197 0.92944 0.93383 0.92107 0.92517 0.92187 0.91426 0.89810 0.92398 0.98184 0.95941 0.92695 0.92327 0.89303 0.81102 0.82459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.91 37.16 0.37 -1.53 16 2 C -0.12 -1.67 5.93 -26.73 -0.16 -1.83 16 3 C -0.15 -2.59 4.57 -26.73 -0.12 -2.71 16 4 C 0.07 1.24 4.95 -3.82 -0.02 1.22 16 5 N -0.52 -10.53 4.65 -237.52 -1.10 -11.63 16 6 C 0.16 3.73 3.66 -4.98 -0.02 3.71 16 7 C -0.50 -14.04 9.11 -34.44 -0.31 -14.36 16 8 H 0.08 2.45 7.69 -52.48 -0.40 2.05 16 9 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 10 N -0.90 -27.39 13.96 55.43 0.77 -26.61 16 11 Si 0.87 21.18 27.45 -169.99 -4.67 16.51 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 13 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 14 H -0.27 -6.21 6.57 56.52 0.37 -5.84 16 15 C 0.09 1.52 4.84 -4.98 -0.02 1.50 16 16 C 0.12 1.73 5.55 -82.51 -0.46 1.27 16 17 N -0.42 -5.75 9.18 -9.36 -0.09 -5.84 16 18 C 0.06 0.70 11.17 -17.46 -0.20 0.51 16 19 C 0.07 0.75 7.34 -39.28 -0.29 0.46 16 20 F -0.13 -1.33 17.28 2.25 0.04 -1.29 16 21 C -0.15 -1.74 10.15 -39.15 -0.40 -2.13 16 22 C 0.10 1.44 7.27 -39.29 -0.29 1.15 16 23 F -0.11 -1.71 16.49 2.25 0.04 -1.67 16 24 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.06 0.96 6.32 -51.93 -0.33 0.64 16 30 H 0.07 1.28 6.23 -51.93 -0.32 0.96 16 31 H 0.08 1.79 7.15 -51.93 -0.37 1.42 16 32 H 0.06 1.03 6.50 -51.93 -0.34 0.69 16 33 H 0.00 0.01 5.02 -51.93 -0.26 -0.25 16 34 H 0.02 0.53 7.19 -51.93 -0.37 0.15 16 35 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 36 H 0.06 0.95 6.04 -51.93 -0.31 0.63 16 37 H 0.09 1.45 7.36 -51.93 -0.38 1.07 16 38 H 0.17 1.39 8.06 -52.49 -0.42 0.97 16 39 H 0.16 1.43 8.06 -52.49 -0.42 1.00 16 LS Contribution 324.37 15.07 4.89 4.89 Total: -1.00 -29.86 324.37 -7.35 -37.21 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: -5.22 Total: -0.68 kcal Atomic # 6 Polarization: -8.87 SS G_CDS: -2.01 Total: -10.87 kcal Atomic # 7 Polarization: -43.67 SS G_CDS: -0.42 Total: -44.09 kcal Atomic # 9 Polarization: -3.04 SS G_CDS: 0.08 Total: -2.96 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.67 Total: 16.51 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.86 -7.35 -37.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207098270.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.565 kcal (2) G-P(sol) polarization free energy of solvation -29.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds