Wall clock time and date at job start Tue Mar 31 2020 05:38:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47371 * 2 1 4 4 C 1.53006 * 109.46865 * 179.97438 * 3 2 1 5 5 N 1.46902 * 109.46491 * 179.53864 * 4 3 2 6 6 C 1.46900 * 111.00421 * 297.09497 * 5 4 3 7 7 C 1.50699 * 109.47016 * 288.61028 * 6 5 4 8 8 H 1.08006 * 120.00292 * 1.06445 * 7 6 5 9 9 C 1.37877 * 120.00110 * 181.06876 * 7 6 5 10 10 N 1.31519 * 120.00498 * 179.97438 * 9 7 6 11 11 Si 1.86799 * 119.99822 * 359.97438 * 9 7 6 12 12 H 1.48506 * 109.47161 * 90.00011 * 11 9 7 13 13 H 1.48501 * 109.47208 * 209.99895 * 11 9 7 14 14 H 1.48504 * 109.47240 * 330.00109 * 11 9 7 15 15 C 1.46901 * 111.00172 * 61.05384 * 5 4 3 16 16 C 1.50697 * 109.47229 * 66.04100 * 15 5 4 17 17 N 1.31856 * 119.60863 * 270.02535 * 16 15 5 18 18 C 1.31836 * 121.77682 * 179.97438 * 17 16 15 19 19 C 1.38483 * 120.77985 * 359.97438 * 18 17 16 20 20 F 1.35101 * 120.43087 * 180.02562 * 19 18 17 21 21 C 1.38798 * 119.13734 * 0.02562 * 19 18 17 22 22 C 1.38436 * 119.60755 * 89.99894 * 16 15 5 23 23 F 1.35101 * 120.43020 * 359.74995 * 22 16 15 24 24 H 1.09004 * 109.47109 * 300.00405 * 1 2 3 25 25 H 1.08997 * 109.46674 * 59.99932 * 1 2 3 26 26 H 1.08999 * 109.47197 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47109 * 239.99594 * 2 1 3 28 28 H 1.09003 * 109.46947 * 119.99769 * 2 1 3 29 29 H 1.08996 * 109.47335 * 59.99979 * 3 2 1 30 30 H 1.09003 * 109.46896 * 299.99800 * 3 2 1 31 31 H 1.08998 * 109.47020 * 59.54362 * 4 3 2 32 32 H 1.09000 * 109.47009 * 299.53371 * 4 3 2 33 33 H 1.08996 * 109.46864 * 48.60630 * 6 5 4 34 34 H 1.08999 * 109.47419 * 168.60934 * 6 5 4 35 35 H 0.96995 * 120.00076 * 180.02562 * 10 9 7 36 36 H 1.08996 * 109.46808 * 306.04261 * 15 5 4 37 37 H 1.08995 * 109.46854 * 186.04187 * 15 5 4 38 38 H 1.07998 * 119.61234 * 179.97438 * 18 17 16 39 39 H 1.07997 * 120.80390 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4423 0.0006 5 7 4.0598 2.8273 -0.0105 6 6 3.6469 3.5219 -1.2373 7 6 4.4253 2.9792 -2.4080 8 1 5.1416 2.1847 -2.2587 9 6 4.2233 3.4970 -3.6698 10 7 4.9030 3.0238 -4.6915 11 14 2.9842 4.8707 -3.9282 12 1 3.6598 6.1835 -3.7681 13 1 2.4130 4.7715 -5.2954 14 1 1.8945 4.7494 -2.9265 15 6 3.6090 3.5547 1.1835 16 6 4.2518 2.9570 2.4084 17 7 3.6485 1.9734 3.0465 18 6 4.1723 1.4189 4.1218 19 6 5.3874 1.8546 4.6234 20 9 5.9179 1.2810 5.7255 21 6 6.0529 2.8882 3.9791 22 6 5.4689 3.4467 2.8501 23 9 6.0835 4.4510 2.1876 24 1 -0.3633 0.5139 0.8900 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6768 1.9563 0.8899 30 1 1.6768 1.9563 -0.8900 31 1 3.9338 0.9213 -0.8850 32 1 3.9330 0.9358 0.8950 33 1 2.5816 3.3624 -1.4041 34 1 3.8428 4.5891 -1.1341 35 1 4.7611 3.3884 -5.5790 36 1 2.5250 3.4780 1.2679 37 1 3.8935 4.6035 1.0989 38 1 3.6477 0.6155 4.6174 39 1 7.0018 3.2494 4.3473 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207098270.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:53 Heat of formation + Delta-G solvation = -73.407690 kcal Electronic energy + Delta-G solvation = -22701.110194 eV Core-core repulsion = 19086.027699 eV Total energy + Delta-G solvation = -3615.082495 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.140 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.11934 -50.08381 -41.27097 -39.06506 -35.35919 -34.66986 -33.44955 -32.50979 -30.24377 -29.18375 -26.69651 -24.97895 -24.84163 -23.43660 -22.44322 -20.94913 -19.27816 -19.14091 -18.88725 -17.47446 -17.35799 -16.88343 -16.73271 -16.41106 -16.30551 -16.10414 -15.72904 -15.49942 -14.97724 -14.56083 -14.50024 -14.16321 -14.06146 -13.92718 -13.57828 -13.25341 -13.13738 -12.81766 -12.45584 -12.37305 -12.27126 -11.90626 -11.88288 -11.77427 -11.42519 -11.24921 -10.90632 -10.88640 -10.73937 -9.89553 -8.95255 -8.25322 -6.27593 -0.38188 -0.19155 1.36336 1.37312 1.47653 2.25165 2.36232 2.63141 2.99332 3.06188 3.09046 3.41038 3.45802 3.58943 4.01157 4.04625 4.08156 4.30163 4.35352 4.42902 4.46935 4.52300 4.65454 4.70689 4.77048 4.87334 4.88938 4.96408 5.08897 5.11269 5.20281 5.36891 5.43769 5.46385 5.52782 5.58345 5.97764 6.32453 6.60286 6.62874 6.77579 7.34940 8.91651 Molecular weight = 284.14amu Principal moments of inertia in cm(-1) A = 0.015666 B = 0.005377 C = 0.004353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.849230 B = 5206.056740 C = 6430.758567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.113 4.113 3 C -0.143 4.143 4 C 0.074 3.926 5 N -0.537 5.537 6 C 0.170 3.830 7 C -0.508 4.508 8 H 0.033 0.967 9 C 0.009 3.991 10 N -0.950 5.950 11 Si 0.943 3.057 12 H -0.266 1.266 13 H -0.284 1.284 14 H -0.247 1.247 15 C 0.094 3.906 16 C 0.097 3.903 17 N -0.433 5.433 18 C 0.073 3.927 19 C 0.079 3.921 20 F -0.119 7.119 21 C -0.142 4.142 22 C 0.084 3.916 23 F -0.126 7.126 24 H 0.060 0.940 25 H 0.043 0.957 26 H 0.065 0.935 27 H 0.046 0.954 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.043 0.957 31 H 0.045 0.955 32 H 0.071 0.929 33 H 0.005 0.995 34 H 0.027 0.973 35 H 0.266 0.734 36 H 0.067 0.933 37 H 0.089 0.911 38 H 0.205 0.795 39 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.068 -1.924 20.690 21.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.151 4.151 3 C -0.182 4.182 4 C -0.054 4.054 5 N -0.260 5.260 6 C 0.044 3.956 7 C -0.546 4.546 8 H 0.051 0.949 9 C -0.188 4.188 10 N -0.591 5.591 11 Si 0.766 3.234 12 H -0.191 1.191 13 H -0.209 1.209 14 H -0.171 1.171 15 C -0.034 4.034 16 C -0.041 4.041 17 N -0.141 5.141 18 C -0.087 4.087 19 C 0.057 3.943 20 F -0.098 7.098 21 C -0.169 4.169 22 C 0.061 3.939 23 F -0.104 7.104 24 H 0.079 0.921 25 H 0.062 0.938 26 H 0.084 0.916 27 H 0.065 0.935 28 H 0.089 0.911 29 H 0.092 0.908 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.089 0.911 33 H 0.022 0.978 34 H 0.045 0.955 35 H 0.075 0.925 36 H 0.085 0.915 37 H 0.107 0.893 38 H 0.222 0.778 39 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -5.280 -2.176 20.200 20.992 hybrid contribution 0.270 0.940 -0.490 1.094 sum -5.010 -1.236 19.710 20.375 Atomic orbital electron populations 1.21723 0.94870 1.02051 1.01591 1.21365 0.96622 0.95570 1.01581 1.22074 0.96663 0.98320 1.01139 1.21944 0.93459 0.89423 1.00554 1.62083 1.59864 1.02874 1.01162 1.19995 0.94221 0.93999 0.87402 1.21182 1.22114 1.19549 0.91785 0.94872 1.25791 0.98025 0.99502 0.95466 1.70052 1.43785 1.44816 1.00446 0.85780 0.80004 0.79595 0.77993 1.19088 1.20930 1.17096 1.20979 0.98497 0.97535 0.86362 1.21301 0.91811 0.94107 0.96914 1.67683 1.33029 1.06762 1.06607 1.23493 0.92209 1.00285 0.92709 1.18483 0.94512 0.94837 0.86466 1.91566 1.85861 1.82856 1.49491 1.21841 1.03179 0.96961 0.94893 1.18380 0.92794 0.89672 0.93014 1.91553 1.81952 1.57302 1.79594 0.92080 0.93785 0.91612 0.93507 0.91079 0.90846 0.93873 0.93643 0.91060 0.97764 0.95511 0.92549 0.91530 0.89305 0.77793 0.80153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.38 9.91 71.98 0.71 -2.67 16 2 C -0.11 -3.15 5.93 30.59 0.18 -2.97 16 3 C -0.14 -4.73 4.57 30.60 0.14 -4.59 16 4 C 0.07 2.84 4.95 86.30 0.43 3.27 16 5 N -0.54 -22.14 4.65 -905.38 -4.21 -26.35 16 6 C 0.17 8.08 3.66 85.56 0.31 8.39 16 7 C -0.51 -29.50 9.11 25.60 0.23 -29.27 16 8 H 0.03 2.17 7.69 -2.91 -0.02 2.15 16 9 C 0.01 0.53 5.47 84.65 0.46 0.99 16 10 N -0.95 -59.90 13.96 21.45 0.30 -59.60 16 11 Si 0.94 43.95 27.45 68.60 1.88 45.83 16 12 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 13 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 14 H -0.25 -10.64 6.57 99.48 0.65 -9.99 16 15 C 0.09 3.11 4.84 85.56 0.41 3.52 16 16 C 0.10 2.79 5.55 42.60 0.24 3.03 16 17 N -0.43 -10.83 9.18 -183.53 -1.68 -12.51 16 18 C 0.07 1.37 11.17 84.75 0.95 2.31 16 19 C 0.08 1.47 7.34 22.46 0.16 1.64 16 20 F -0.12 -2.07 17.28 44.97 0.78 -1.30 16 21 C -0.14 -2.91 10.15 22.55 0.23 -2.68 16 22 C 0.08 2.25 7.27 22.46 0.16 2.42 16 23 F -0.13 -3.84 16.49 44.97 0.74 -3.10 16 24 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 25 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.05 1.42 8.14 -2.38 -0.02 1.40 16 28 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.07 2.23 6.32 -2.39 -0.02 2.22 16 30 H 0.04 1.63 6.23 -2.39 -0.01 1.62 16 31 H 0.04 2.06 7.15 -2.39 -0.02 2.04 16 32 H 0.07 2.51 6.50 -2.39 -0.02 2.49 16 33 H 0.00 0.22 5.02 -2.39 -0.01 0.21 16 34 H 0.03 1.25 7.19 -2.39 -0.02 1.23 16 35 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 36 H 0.07 2.06 6.04 -2.39 -0.01 2.05 16 37 H 0.09 2.87 7.36 -2.39 -0.02 2.85 16 38 H 0.21 2.39 8.06 -2.91 -0.02 2.37 16 39 H 0.18 2.77 8.06 -2.91 -0.02 2.74 16 Total: -1.00 -66.97 324.37 3.44 -63.53 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: 1.01 Total: 10.09 kcal Atomic # 6 Polarization: -21.23 SS G_CDS: 4.63 Total: -16.61 kcal Atomic # 7 Polarization: -92.86 SS G_CDS: -5.60 Total: -98.46 kcal Atomic # 9 Polarization: -5.91 SS G_CDS: 1.52 Total: -4.39 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 1.88 Total: 45.83 kcal Total: -66.97 3.44 -63.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207098270.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.877 kcal (2) G-P(sol) polarization free energy of solvation -66.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds