Wall clock time and date at job start Tue Mar 31 2020 06:47:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 C 1.52996 * 109.47379 * 50.09923 * 3 2 1 5 5 N 1.46897 * 109.47225 * 182.14424 * 4 3 2 6 6 C 1.46904 * 110.99785 * 200.76903 * 5 4 3 7 7 C 1.50701 * 109.47117 * 66.04809 * 6 5 4 8 8 H 1.08001 * 120.00031 * 359.97438 * 7 6 5 9 9 C 1.37883 * 120.00139 * 179.97438 * 7 6 5 10 10 N 1.31513 * 119.99841 * 179.97438 * 9 7 6 11 11 Si 1.86792 * 119.99751 * 359.97438 * 9 7 6 12 12 H 1.48497 * 109.47462 * 90.00200 * 11 9 7 13 13 H 1.48500 * 109.47314 * 210.00231 * 11 9 7 14 14 H 1.48498 * 109.47501 * 330.00001 * 11 9 7 15 15 C 1.46894 * 111.00188 * 76.81856 * 5 4 3 16 16 C 1.53009 * 109.47256 * 200.63775 * 15 5 4 17 17 C 1.50701 * 115.54725 * 269.13126 * 16 15 5 18 18 C 1.38236 * 119.99772 * 144.28536 * 17 16 15 19 19 C 1.38236 * 119.99456 * 179.74188 * 18 17 16 20 20 C 1.38233 * 120.00172 * 0.52465 * 19 18 17 21 21 C 1.38233 * 119.99915 * 359.75330 * 20 19 18 22 22 C 1.38230 * 120.00112 * 359.96871 * 21 20 19 23 23 C 1.52999 * 117.49815 * 123.41590 * 16 15 5 24 24 C 1.52999 * 117.49759 * 54.79462 * 16 15 5 25 25 H 1.09002 * 109.47267 * 290.09700 * 3 2 1 26 26 H 1.08998 * 109.46886 * 170.10147 * 3 2 1 27 27 H 1.08999 * 109.47280 * 62.14156 * 4 3 2 28 28 H 1.09002 * 109.47080 * 302.14262 * 4 3 2 29 29 H 1.09004 * 109.46707 * 186.04216 * 6 5 4 30 30 H 1.08993 * 109.47392 * 306.04338 * 6 5 4 31 31 H 0.96997 * 119.99304 * 180.02562 * 10 9 7 32 32 H 1.08999 * 109.47759 * 80.63328 * 15 5 4 33 33 H 1.09004 * 109.46828 * 320.63257 * 15 5 4 34 34 H 1.07998 * 120.00213 * 359.97438 * 18 17 16 35 35 H 1.08005 * 119.99314 * 180.29751 * 19 18 17 36 36 H 1.08007 * 119.99902 * 179.76924 * 20 19 18 37 37 H 1.08005 * 119.99752 * 179.97438 * 21 20 19 38 38 H 1.08006 * 119.99833 * 179.97438 * 22 21 20 39 39 H 1.08991 * 117.50156 * 0.02562 * 23 16 15 40 40 H 1.09006 * 117.49365 * 145.01896 * 23 16 15 41 41 H 1.08992 * 117.50120 * 214.98025 * 24 16 15 42 42 H 1.09007 * 117.49823 * 359.97438 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1184 -0.9244 -1.1066 5 7 4.5865 -0.9637 -1.0736 6 6 5.1302 -1.4113 -2.3628 7 6 4.8228 -0.3838 -3.4215 8 1 4.2776 0.5118 -3.1627 9 6 5.2375 -0.5873 -4.7207 10 7 4.9688 0.3091 -5.6447 11 14 6.1811 -2.1360 -5.1681 12 1 5.2254 -3.1994 -5.5695 13 1 7.1016 -1.8462 -6.2968 14 1 6.9665 -2.5939 -3.9940 15 6 5.0658 -1.8145 0.0238 16 6 6.5121 -1.4458 0.3607 17 6 7.5701 -2.2182 -0.3844 18 6 8.7427 -1.5930 -0.7654 19 6 9.7154 -2.3030 -1.4441 20 6 9.5110 -3.6352 -1.7513 21 6 8.3360 -4.2588 -1.3752 22 6 7.3657 -3.5504 -0.6915 23 6 6.8193 -1.0363 1.8025 24 6 6.8088 0.0178 0.6936 25 1 2.9715 -0.3523 0.9651 26 1 2.9708 1.0132 -0.1767 27 1 2.7867 -0.5500 -2.0750 28 1 2.7245 -1.9288 -0.9510 29 1 6.2100 -1.5343 -2.2786 30 1 4.6764 -2.3633 -2.6377 31 1 5.2603 0.1658 -6.5587 32 1 5.0188 -2.8602 -0.2800 33 1 4.4382 -1.6626 0.9020 34 1 8.9003 -0.5509 -0.5296 35 1 10.6335 -1.8158 -1.7377 36 1 10.2695 -4.1889 -2.2848 37 1 8.1762 -5.2996 -1.6155 38 1 6.4475 -4.0376 -0.3980 39 1 5.9912 -1.0299 2.5111 40 1 7.7868 -1.3258 2.2126 41 1 7.7694 0.4218 0.3742 42 1 5.9737 0.7181 0.6722 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207839007.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:13 Heat of formation + Delta-G solvation = 84.588779 kcal Electronic energy + Delta-G solvation = -22425.972095 eV Core-core repulsion = 19371.970371 eV Total energy + Delta-G solvation = -3054.001724 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.158 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.79821 -37.69330 -36.58553 -35.59178 -32.58581 -31.19584 -30.61545 -30.25884 -28.19517 -25.67845 -23.03452 -22.86960 -22.46175 -21.63621 -20.27735 -18.89271 -17.32802 -17.07413 -16.73589 -15.36974 -15.00457 -14.81418 -14.66916 -14.51929 -14.21690 -13.80597 -13.39913 -13.26351 -13.21100 -12.69121 -12.55747 -12.36869 -12.15536 -12.05986 -11.90887 -11.44072 -11.25095 -11.17162 -10.85281 -10.76594 -10.67100 -10.48463 -10.44106 -9.92394 -9.81860 -9.78366 -9.27671 -8.66077 -8.58051 -8.21383 -7.52115 -6.05562 -4.02413 1.60156 1.66257 2.95943 3.00836 3.28745 3.37273 3.43343 3.82849 4.10346 4.31806 4.43530 4.76629 4.88418 4.96153 5.12407 5.19064 5.27649 5.28309 5.33068 5.38361 5.41495 5.56439 5.68008 5.71160 5.77442 5.82109 5.84843 6.04519 6.10580 6.23052 6.24076 6.30310 6.31900 6.48136 6.51160 6.73769 6.74907 6.87155 6.90226 6.95541 7.25642 7.60475 7.77683 7.82221 7.96191 8.62440 9.02321 9.57102 11.07246 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.011124 B = 0.007550 C = 0.005118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2516.455461 B = 3707.597234 C = 5469.532818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C 0.218 3.782 3 C -0.025 4.025 4 C 0.062 3.938 5 N -0.518 5.518 6 C 0.164 3.836 7 C -0.509 4.509 8 H 0.082 0.918 9 C 0.071 3.929 10 N -0.900 5.900 11 Si 0.864 3.136 12 H -0.280 1.280 13 H -0.288 1.288 14 H -0.258 1.258 15 C 0.085 3.915 16 C -0.081 4.081 17 C -0.027 4.027 18 C -0.115 4.115 19 C -0.118 4.118 20 C -0.132 4.132 21 C -0.119 4.119 22 C -0.116 4.116 23 C -0.171 4.171 24 C -0.142 4.142 25 H 0.099 0.901 26 H 0.117 0.883 27 H 0.101 0.899 28 H 0.029 0.971 29 H 0.042 0.958 30 H -0.020 1.020 31 H 0.263 0.737 32 H 0.036 0.964 33 H 0.069 0.931 34 H 0.124 0.876 35 H 0.118 0.882 36 H 0.116 0.884 37 H 0.116 0.884 38 H 0.119 0.881 39 H 0.093 0.907 40 H 0.089 0.911 41 H 0.091 0.909 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.627 -5.657 13.754 16.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.133 5.133 2 C -0.100 4.100 3 C -0.065 4.065 4 C -0.068 4.068 5 N -0.241 5.241 6 C 0.038 3.962 7 C -0.547 4.547 8 H 0.100 0.900 9 C -0.130 4.130 10 N -0.539 5.539 11 Si 0.691 3.309 12 H -0.206 1.206 13 H -0.214 1.214 14 H -0.183 1.183 15 C -0.043 4.043 16 C -0.082 4.082 17 C -0.027 4.027 18 C -0.133 4.133 19 C -0.136 4.136 20 C -0.150 4.150 21 C -0.138 4.138 22 C -0.134 4.134 23 C -0.209 4.209 24 C -0.179 4.179 25 H 0.117 0.883 26 H 0.135 0.865 27 H 0.120 0.880 28 H 0.047 0.953 29 H 0.060 0.940 30 H -0.002 1.002 31 H 0.072 0.928 32 H 0.054 0.946 33 H 0.087 0.913 34 H 0.141 0.859 35 H 0.136 0.864 36 H 0.134 0.866 37 H 0.134 0.866 38 H 0.137 0.863 39 H 0.112 0.888 40 H 0.107 0.893 41 H 0.109 0.891 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 6.121 -5.143 13.632 15.804 hybrid contribution 0.723 -1.688 -0.814 2.008 sum 6.844 -6.831 12.818 16.056 Atomic orbital electron populations 1.81167 1.13284 1.09499 1.09357 1.29373 0.95454 0.92567 0.92577 1.19384 0.80423 1.04745 1.01972 1.21941 0.89224 0.96400 0.99231 1.61825 1.05893 1.51306 1.05084 1.20242 0.95914 0.94257 0.85744 1.21026 1.36341 1.06116 0.91227 0.90046 1.24846 0.95649 0.96077 0.96449 1.69888 1.47029 1.34819 1.02133 0.87000 0.80711 0.84293 0.78859 1.20612 1.21354 1.18257 1.21704 0.92137 0.95236 0.95258 1.20042 0.93940 0.97884 0.96287 1.19013 0.93623 0.93144 0.96926 1.21062 0.93590 0.99811 0.98846 1.21077 0.99178 0.94480 0.98889 1.21052 0.97735 0.95303 1.00869 1.21051 0.94176 0.99719 0.98808 1.20943 0.98930 0.94133 0.99346 1.23124 1.02535 1.04641 0.90589 1.22895 1.03245 0.91406 1.00350 0.88273 0.86541 0.88048 0.95286 0.93976 1.00242 0.92753 0.94570 0.91260 0.85851 0.86397 0.86643 0.86560 0.86343 0.88819 0.89296 0.89052 0.87517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -7.73 18.54 42.15 0.78 -6.95 16 2 C 0.22 3.13 15.43 -20.76 -0.32 2.81 16 3 C -0.02 -0.30 5.84 -29.52 -0.17 -0.47 16 4 C 0.06 0.98 4.74 -3.83 -0.02 0.96 16 5 N -0.52 -9.00 4.12 -236.07 -0.97 -9.97 16 6 C 0.16 3.64 3.60 -4.97 -0.02 3.62 16 7 C -0.51 -13.53 8.77 -34.44 -0.30 -13.83 16 8 H 0.08 2.33 7.57 -52.49 -0.40 1.93 16 9 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 10 N -0.90 -26.99 13.96 55.43 0.77 -26.21 16 11 Si 0.86 21.26 27.47 -169.99 -4.67 16.59 16 12 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 13 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 14 H -0.26 -6.17 6.54 56.52 0.37 -5.80 16 15 C 0.08 1.21 4.77 -3.82 -0.02 1.19 16 16 C -0.08 -1.11 1.92 -155.66 -0.30 -1.41 16 17 C -0.03 -0.41 3.71 -104.62 -0.39 -0.80 16 18 C -0.12 -1.72 9.39 -39.58 -0.37 -2.09 16 19 C -0.12 -1.68 10.05 -39.58 -0.40 -2.07 16 20 C -0.13 -1.84 10.05 -39.59 -0.40 -2.23 16 21 C -0.12 -1.71 10.05 -39.59 -0.40 -2.11 16 22 C -0.12 -1.74 9.15 -39.59 -0.36 -2.10 16 23 C -0.17 -1.87 9.88 -26.73 -0.26 -2.13 16 24 C -0.14 -1.80 9.36 -26.73 -0.25 -2.05 16 25 H 0.10 0.94 6.78 -51.93 -0.35 0.59 16 26 H 0.12 1.35 8.14 -51.93 -0.42 0.93 16 27 H 0.10 1.94 6.58 -51.93 -0.34 1.60 16 28 H 0.03 0.44 7.98 -51.93 -0.41 0.03 16 29 H 0.04 0.98 4.99 -51.93 -0.26 0.72 16 30 H -0.02 -0.46 7.55 -51.93 -0.39 -0.85 16 31 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 32 H 0.04 0.54 5.93 -51.93 -0.31 0.23 16 33 H 0.07 0.80 6.27 -51.93 -0.33 0.47 16 34 H 0.12 1.68 5.93 -52.49 -0.31 1.37 16 35 H 0.12 1.39 8.06 -52.48 -0.42 0.97 16 36 H 0.12 1.33 8.06 -52.48 -0.42 0.91 16 37 H 0.12 1.40 8.06 -52.48 -0.42 0.97 16 38 H 0.12 1.63 6.53 -52.48 -0.34 1.29 16 39 H 0.09 0.87 8.03 -51.93 -0.42 0.46 16 40 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.09 1.14 6.08 -51.93 -0.32 0.83 16 42 H 0.11 1.36 8.14 -51.93 -0.42 0.93 16 LS Contribution 344.14 15.07 5.19 5.19 Total: -1.00 -31.28 344.14 -8.86 -40.13 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -5.88 Total: 2.03 kcal Atomic # 6 Polarization: -16.73 SS G_CDS: -4.08 Total: -20.81 kcal Atomic # 7 Polarization: -43.71 SS G_CDS: 0.58 Total: -43.13 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.67 Total: 16.59 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.28 -8.86 -40.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207839007.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.723 kcal (2) G-P(sol) polarization free energy of solvation -31.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds