Wall clock time and date at job start Tue Mar 31 2020 06:47:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 C 1.52996 * 109.47379 * 50.09923 * 3 2 1 5 5 N 1.46897 * 109.47225 * 182.14424 * 4 3 2 6 6 C 1.46904 * 110.99785 * 200.76903 * 5 4 3 7 7 C 1.50701 * 109.47117 * 66.04809 * 6 5 4 8 8 H 1.08001 * 120.00031 * 359.97438 * 7 6 5 9 9 C 1.37883 * 120.00139 * 179.97438 * 7 6 5 10 10 N 1.31513 * 119.99841 * 179.97438 * 9 7 6 11 11 Si 1.86792 * 119.99751 * 359.97438 * 9 7 6 12 12 H 1.48497 * 109.47462 * 90.00200 * 11 9 7 13 13 H 1.48500 * 109.47314 * 210.00231 * 11 9 7 14 14 H 1.48498 * 109.47501 * 330.00001 * 11 9 7 15 15 C 1.46894 * 111.00188 * 76.81856 * 5 4 3 16 16 C 1.53009 * 109.47256 * 200.63775 * 15 5 4 17 17 C 1.50701 * 115.54725 * 269.13126 * 16 15 5 18 18 C 1.38236 * 119.99772 * 144.28536 * 17 16 15 19 19 C 1.38236 * 119.99456 * 179.74188 * 18 17 16 20 20 C 1.38233 * 120.00172 * 0.52465 * 19 18 17 21 21 C 1.38233 * 119.99915 * 359.75330 * 20 19 18 22 22 C 1.38230 * 120.00112 * 359.96871 * 21 20 19 23 23 C 1.52999 * 117.49815 * 123.41590 * 16 15 5 24 24 C 1.52999 * 117.49759 * 54.79462 * 16 15 5 25 25 H 1.09002 * 109.47267 * 290.09700 * 3 2 1 26 26 H 1.08998 * 109.46886 * 170.10147 * 3 2 1 27 27 H 1.08999 * 109.47280 * 62.14156 * 4 3 2 28 28 H 1.09002 * 109.47080 * 302.14262 * 4 3 2 29 29 H 1.09004 * 109.46707 * 186.04216 * 6 5 4 30 30 H 1.08993 * 109.47392 * 306.04338 * 6 5 4 31 31 H 0.96997 * 119.99304 * 180.02562 * 10 9 7 32 32 H 1.08999 * 109.47759 * 80.63328 * 15 5 4 33 33 H 1.09004 * 109.46828 * 320.63257 * 15 5 4 34 34 H 1.07998 * 120.00213 * 359.97438 * 18 17 16 35 35 H 1.08005 * 119.99314 * 180.29751 * 19 18 17 36 36 H 1.08007 * 119.99902 * 179.76924 * 20 19 18 37 37 H 1.08005 * 119.99752 * 179.97438 * 21 20 19 38 38 H 1.08006 * 119.99833 * 179.97438 * 22 21 20 39 39 H 1.08991 * 117.50156 * 0.02562 * 23 16 15 40 40 H 1.09006 * 117.49365 * 145.01896 * 23 16 15 41 41 H 1.08992 * 117.50120 * 214.98025 * 24 16 15 42 42 H 1.09007 * 117.49823 * 359.97438 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1184 -0.9244 -1.1066 5 7 4.5865 -0.9637 -1.0736 6 6 5.1302 -1.4113 -2.3628 7 6 4.8228 -0.3838 -3.4215 8 1 4.2776 0.5118 -3.1627 9 6 5.2375 -0.5873 -4.7207 10 7 4.9688 0.3091 -5.6447 11 14 6.1811 -2.1360 -5.1681 12 1 5.2254 -3.1994 -5.5695 13 1 7.1016 -1.8462 -6.2968 14 1 6.9665 -2.5939 -3.9940 15 6 5.0658 -1.8145 0.0238 16 6 6.5121 -1.4458 0.3607 17 6 7.5701 -2.2182 -0.3844 18 6 8.7427 -1.5930 -0.7654 19 6 9.7154 -2.3030 -1.4441 20 6 9.5110 -3.6352 -1.7513 21 6 8.3360 -4.2588 -1.3752 22 6 7.3657 -3.5504 -0.6915 23 6 6.8193 -1.0363 1.8025 24 6 6.8088 0.0178 0.6936 25 1 2.9715 -0.3523 0.9651 26 1 2.9708 1.0132 -0.1767 27 1 2.7867 -0.5500 -2.0750 28 1 2.7245 -1.9288 -0.9510 29 1 6.2100 -1.5343 -2.2786 30 1 4.6764 -2.3633 -2.6377 31 1 5.2603 0.1658 -6.5587 32 1 5.0188 -2.8602 -0.2800 33 1 4.4382 -1.6626 0.9020 34 1 8.9003 -0.5509 -0.5296 35 1 10.6335 -1.8158 -1.7377 36 1 10.2695 -4.1889 -2.2848 37 1 8.1762 -5.2996 -1.6155 38 1 6.4475 -4.0376 -0.3980 39 1 5.9912 -1.0299 2.5111 40 1 7.7868 -1.3258 2.2126 41 1 7.7694 0.4218 0.3742 42 1 5.9737 0.7181 0.6722 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207839007.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:13 Heat of formation + Delta-G solvation = 67.327264 kcal Electronic energy + Delta-G solvation = -22426.720610 eV Core-core repulsion = 19371.970371 eV Total energy + Delta-G solvation = -3054.750239 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.158 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.85801 -38.90025 -37.71442 -36.85723 -34.61269 -32.44195 -31.76095 -31.29235 -29.84399 -26.99912 -24.50067 -23.99711 -23.62030 -22.59932 -21.71589 -20.00677 -18.94547 -18.41541 -18.00245 -16.59163 -16.42213 -16.07990 -15.92647 -15.73285 -15.38329 -15.20276 -14.64624 -14.51383 -14.38891 -14.26677 -13.96453 -13.61251 -13.50320 -13.35328 -13.16888 -12.76046 -12.67544 -12.49290 -12.23099 -12.02482 -11.81403 -11.80183 -11.66002 -11.61261 -11.31532 -10.97431 -10.81069 -10.73147 -9.73700 -9.27650 -8.93700 -8.23087 -6.22047 0.54566 0.58397 1.31603 1.36023 1.46749 1.77887 1.86113 2.36669 2.78359 2.95468 3.13034 3.28103 3.70278 3.81488 3.95097 4.07656 4.18786 4.19290 4.30067 4.32286 4.43931 4.46235 4.63918 4.65546 4.74949 4.79318 4.90965 4.99607 5.03825 5.10523 5.12841 5.21808 5.24906 5.29505 5.33390 5.35071 5.55208 5.66690 5.68582 5.69865 5.83328 6.07299 6.21948 6.44697 6.63323 6.74239 6.86030 7.41028 8.93074 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.011124 B = 0.007550 C = 0.005118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2516.455461 B = 3707.597234 C = 5469.532818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C 0.241 3.759 3 C -0.009 4.009 4 C 0.062 3.938 5 N -0.520 5.520 6 C 0.180 3.820 7 C -0.499 4.499 8 H 0.050 0.950 9 C 0.013 3.987 10 N -0.948 5.948 11 Si 0.926 3.074 12 H -0.276 1.276 13 H -0.289 1.289 14 H -0.246 1.246 15 C 0.085 3.915 16 C -0.103 4.103 17 C -0.040 4.040 18 C -0.136 4.136 19 C -0.129 4.129 20 C -0.144 4.144 21 C -0.131 4.131 22 C -0.134 4.134 23 C -0.139 4.139 24 C -0.152 4.152 25 H 0.142 0.858 26 H 0.126 0.874 27 H 0.059 0.941 28 H 0.039 0.961 29 H 0.038 0.962 30 H -0.028 1.028 31 H 0.262 0.738 32 H 0.032 0.968 33 H 0.106 0.894 34 H 0.128 0.872 35 H 0.136 0.864 36 H 0.137 0.863 37 H 0.135 0.865 38 H 0.126 0.874 39 H 0.119 0.881 40 H 0.094 0.906 41 H 0.086 0.914 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.535 -6.930 16.062 19.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.181 5.181 2 C -0.075 4.075 3 C -0.049 4.049 4 C -0.067 4.067 5 N -0.243 5.243 6 C 0.052 3.948 7 C -0.538 4.538 8 H 0.068 0.932 9 C -0.184 4.184 10 N -0.590 5.590 11 Si 0.751 3.249 12 H -0.202 1.202 13 H -0.215 1.215 14 H -0.170 1.170 15 C -0.043 4.043 16 C -0.103 4.103 17 C -0.040 4.040 18 C -0.154 4.154 19 C -0.147 4.147 20 C -0.161 4.161 21 C -0.149 4.149 22 C -0.152 4.152 23 C -0.176 4.176 24 C -0.189 4.189 25 H 0.159 0.841 26 H 0.144 0.856 27 H 0.078 0.922 28 H 0.057 0.943 29 H 0.056 0.944 30 H -0.010 1.010 31 H 0.071 0.929 32 H 0.051 0.949 33 H 0.124 0.876 34 H 0.146 0.854 35 H 0.154 0.846 36 H 0.155 0.845 37 H 0.153 0.847 38 H 0.144 0.856 39 H 0.137 0.863 40 H 0.112 0.888 41 H 0.104 0.896 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 7.027 -6.425 15.974 18.596 hybrid contribution 0.441 -1.247 -1.489 1.992 sum 7.468 -7.672 14.484 18.012 Atomic orbital electron populations 1.81197 1.14814 1.11077 1.10997 1.29677 0.95643 0.91132 0.91096 1.19379 0.78685 1.04463 1.02388 1.21849 0.88516 0.97659 0.98713 1.61708 1.06546 1.52206 1.03812 1.19882 0.95691 0.92205 0.86974 1.21345 1.34307 1.05790 0.92366 0.93222 1.25637 0.97073 0.99018 0.96712 1.70034 1.49268 1.37129 1.02555 0.86010 0.79461 0.80699 0.78699 1.20199 1.21534 1.16971 1.21841 0.93159 0.94328 0.94939 1.20101 0.93189 0.98437 0.98622 1.19279 0.94108 0.93504 0.97111 1.21300 0.94160 1.00341 0.99594 1.21412 0.99818 0.94906 0.98599 1.21398 0.98305 0.95488 1.00955 1.21399 0.94199 1.00795 0.98507 1.21175 0.99604 0.94426 0.99993 1.23183 1.03645 1.01469 0.89335 1.22924 1.03049 0.91102 1.01815 0.84065 0.85641 0.92212 0.94305 0.94422 1.01048 0.92903 0.94945 0.87620 0.85384 0.84629 0.84484 0.84695 0.85602 0.86287 0.88797 0.89588 0.87523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -16.60 18.54 20.00 0.37 -16.23 16 2 C 0.24 6.50 15.43 89.44 1.38 7.88 16 3 C -0.01 -0.19 5.84 28.79 0.17 -0.02 16 4 C 0.06 1.89 4.74 86.30 0.41 2.30 16 5 N -0.52 -17.17 4.12 -900.80 -3.71 -20.89 16 6 C 0.18 7.84 3.60 85.56 0.31 8.15 16 7 C -0.50 -27.07 8.77 25.60 0.22 -26.85 16 8 H 0.05 2.95 7.57 -2.91 -0.02 2.92 16 9 C 0.01 0.72 5.47 84.66 0.46 1.18 16 10 N -0.95 -58.56 13.96 21.45 0.30 -58.26 16 11 Si 0.93 44.34 27.47 68.60 1.88 46.22 16 12 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 13 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 14 H -0.25 -11.18 6.54 99.48 0.65 -10.53 16 15 C 0.08 2.14 4.77 86.31 0.41 2.55 16 16 C -0.10 -2.55 1.92 -52.92 -0.10 -2.65 16 17 C -0.04 -1.15 3.71 -19.87 -0.07 -1.22 16 18 C -0.14 -3.90 9.39 22.27 0.21 -3.70 16 19 C -0.13 -3.48 10.05 22.27 0.22 -3.26 16 20 C -0.14 -3.73 10.05 22.27 0.22 -3.51 16 21 C -0.13 -3.50 10.05 22.27 0.22 -3.28 16 22 C -0.13 -3.79 9.15 22.27 0.20 -3.58 16 23 C -0.14 -2.49 9.88 30.59 0.30 -2.19 16 24 C -0.15 -3.47 9.36 30.59 0.29 -3.19 16 25 H 0.14 1.91 6.78 -2.39 -0.02 1.90 16 26 H 0.13 2.58 8.14 -2.39 -0.02 2.56 16 27 H 0.06 2.32 6.58 -2.39 -0.02 2.31 16 28 H 0.04 1.10 7.98 -2.39 -0.02 1.08 16 29 H 0.04 1.71 4.99 -2.38 -0.01 1.70 16 30 H -0.03 -1.27 7.55 -2.39 -0.02 -1.29 16 31 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 32 H 0.03 0.87 5.93 -2.39 -0.01 0.85 16 33 H 0.11 1.89 6.27 -2.38 -0.01 1.87 16 34 H 0.13 3.39 5.93 -2.91 -0.02 3.37 16 35 H 0.14 2.99 8.06 -2.91 -0.02 2.97 16 36 H 0.14 2.83 8.06 -2.91 -0.02 2.81 16 37 H 0.14 2.94 8.06 -2.91 -0.02 2.92 16 38 H 0.13 3.22 6.53 -2.91 -0.02 3.20 16 39 H 0.12 1.55 8.03 -2.39 -0.02 1.54 16 40 H 0.09 1.62 8.14 -2.38 -0.02 1.61 16 41 H 0.09 2.03 6.08 -2.39 -0.01 2.02 16 42 H 0.11 2.42 8.14 -2.38 -0.02 2.40 16 Total: -1.00 -69.81 344.14 4.67 -65.15 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: 0.96 Total: 15.38 kcal Atomic # 6 Polarization: -36.23 SS G_CDS: 4.86 Total: -31.37 kcal Atomic # 7 Polarization: -92.33 SS G_CDS: -3.04 Total: -95.38 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 1.88 Total: 46.22 kcal Total: -69.81 4.67 -65.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207839007.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.476 kcal (2) G-P(sol) polarization free energy of solvation -69.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds