Wall clock time and date at job start Tue Mar 31 2020 06:25:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34233 * 117.00139 * 2 1 4 4 O 1.20822 * 119.99829 * 0.02562 * 3 2 1 5 5 C 1.50698 * 119.99939 * 180.02562 * 3 2 1 6 6 H 1.09005 * 109.47198 * 40.00160 * 5 3 2 7 7 N 1.46903 * 109.46859 * 159.99819 * 5 3 2 8 8 C 1.53000 * 109.47050 * 280.00179 * 5 3 2 9 9 C 1.50697 * 109.46800 * 174.99999 * 8 5 3 10 10 O 1.21283 * 120.00450 * 0.02562 * 9 8 5 11 11 N 1.34783 * 119.99776 * 179.97438 * 9 8 5 12 12 C 1.46502 * 119.99788 * 180.02562 * 11 9 8 13 13 H 1.09007 * 109.35395 * 324.81911 * 12 11 9 14 14 C 1.52951 * 109.41726 * 84.64817 * 12 11 9 15 15 C 1.53229 * 109.40668 * 183.70668 * 14 12 11 16 16 C 1.51275 * 108.53216 * 305.36788 * 15 14 12 17 17 C 1.37875 * 120.85201 * 231.36732 * 16 15 14 18 18 N 1.31519 * 119.99836 * 348.85315 * 17 16 15 19 19 Si 1.86804 * 120.00046 * 168.84618 * 17 16 15 20 20 H 1.48496 * 109.46885 * 354.66471 * 19 17 16 21 21 H 1.48502 * 109.46992 * 114.66209 * 19 17 16 22 22 H 1.48500 * 109.47152 * 234.66080 * 19 17 16 23 23 C 1.51298 * 118.30644 * 51.35079 * 16 15 14 24 24 C 1.52958 * 109.40847 * 205.00125 * 12 11 9 25 25 H 1.08995 * 109.47279 * 180.02562 * 1 2 3 26 26 H 1.09008 * 109.46760 * 299.99589 * 1 2 3 27 27 H 1.08995 * 109.47271 * 59.99470 * 1 2 3 28 28 H 1.00894 * 111.00279 * 296.04761 * 7 5 3 29 29 H 1.00897 * 110.99528 * 60.00512 * 7 5 3 30 30 H 1.09000 * 109.47019 * 55.00071 * 8 5 3 31 31 H 1.08996 * 109.46980 * 294.99951 * 8 5 3 32 32 H 0.96994 * 119.99816 * 359.97438 * 11 9 8 33 33 H 1.09005 * 109.48190 * 303.67798 * 14 12 11 34 34 H 1.08997 * 109.48409 * 63.70446 * 14 12 11 35 35 H 1.08993 * 109.62681 * 65.08160 * 15 14 12 36 36 H 1.08995 * 109.62832 * 185.66066 * 15 14 12 37 37 H 0.96997 * 119.99489 * 180.02562 * 18 17 16 38 38 H 1.09003 * 109.64489 * 188.94293 * 23 16 15 39 39 H 1.08997 * 109.62809 * 68.35868 * 23 16 15 40 40 H 1.08999 * 109.48508 * 296.26699 * 24 12 11 41 41 H 1.09001 * 109.48681 * 56.30378 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 -0.0006 6 1 3.9702 0.5078 -0.6615 7 7 3.9871 2.6002 -0.4742 8 6 4.0893 1.0510 1.4197 9 6 5.5956 1.0075 1.3993 10 8 6.1921 1.1427 0.3520 11 7 6.2798 0.8194 2.5452 12 6 7.7441 0.7776 2.5254 13 1 8.0796 0.3029 1.6033 14 6 8.2944 2.2031 2.5928 15 6 9.8220 2.1651 2.4789 16 6 10.3608 1.2379 3.5459 17 6 11.3628 1.6486 4.3992 18 7 12.0135 2.7661 4.1597 19 14 11.7962 0.6177 5.8956 20 1 10.8406 -0.5130 6.0113 21 1 13.1754 0.0872 5.7486 22 1 11.7172 1.4596 7.1164 23 6 9.7717 -0.1516 3.6532 24 6 8.2458 -0.0292 3.7242 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 3.7092 2.7466 -1.4331 29 1 3.6252 3.3290 0.1224 30 1 3.7037 0.1068 1.8043 31 1 3.7581 1.8672 2.0617 32 1 5.8028 0.7124 3.3829 33 1 7.8833 2.7907 1.7719 34 1 8.0116 2.6575 3.5423 35 1 10.1066 1.7945 1.4942 36 1 10.2252 3.1668 2.6269 37 1 12.7188 3.0548 4.7599 38 1 10.1423 -0.6381 4.5554 39 1 10.0516 -0.7365 2.7771 40 1 7.9645 0.4779 4.6471 41 1 7.8002 -1.0237 3.7054 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001220094762.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:27 Heat of formation + Delta-G solvation = -136.383231 kcal Electronic energy + Delta-G solvation = -22665.200575 eV Core-core repulsion = 19158.474772 eV Total energy + Delta-G solvation = -3506.725803 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.97295 -39.43702 -37.18789 -36.71132 -34.97586 -33.60059 -31.63943 -29.94273 -29.54107 -28.42046 -27.06437 -24.77330 -22.08205 -21.60089 -20.84346 -19.86392 -19.42276 -18.24856 -17.40061 -16.91567 -16.36416 -16.17796 -15.78737 -15.40564 -14.91653 -14.43695 -14.14625 -13.71954 -13.63086 -13.28812 -13.05907 -12.81371 -12.45562 -12.25594 -12.18190 -11.99057 -11.68535 -11.52881 -11.18819 -11.06358 -10.99935 -10.81602 -10.70940 -10.20858 -9.88092 -9.50245 -9.36013 -9.10599 -8.98979 -8.76664 -8.38755 -8.19323 -6.08354 -3.97263 1.75080 2.35375 3.04780 3.26599 3.35095 3.36859 3.60384 4.12611 4.39534 4.45854 4.53485 4.72889 4.79797 4.85459 5.12815 5.16864 5.21738 5.34733 5.47545 5.75588 5.93235 5.97255 6.21719 6.51884 6.58965 6.71736 6.76203 6.83232 6.88854 7.10270 7.13369 7.15502 7.31371 7.34584 7.44886 7.67700 7.82314 7.88949 7.99940 8.43039 8.69081 9.00248 9.57026 11.01240 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.040157 B = 0.003160 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.089220 B = 8859.833221 C = 9256.381208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.357 6.357 3 C 0.427 3.573 4 O -0.513 6.513 5 C 0.123 3.877 6 H 0.126 0.874 7 N -0.794 5.794 8 C -0.133 4.133 9 C 0.515 3.485 10 O -0.516 6.516 11 N -0.729 5.729 12 C 0.156 3.844 13 H 0.077 0.923 14 C -0.114 4.114 15 C 0.014 3.986 16 C -0.489 4.489 17 C 0.076 3.924 18 N -0.886 5.886 19 Si 0.878 3.122 20 H -0.256 1.256 21 H -0.283 1.283 22 H -0.287 1.287 23 C -0.022 4.022 24 C -0.113 4.113 25 H 0.101 0.899 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.348 0.652 29 H 0.348 0.652 30 H 0.103 0.897 31 H 0.096 0.904 32 H 0.391 0.609 33 H 0.037 0.963 34 H 0.046 0.954 35 H 0.006 0.994 36 H 0.053 0.947 37 H 0.263 0.737 38 H 0.043 0.957 39 H 0.019 0.981 40 H 0.054 0.946 41 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.887 -5.714 -4.187 22.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.272 6.272 3 C 0.267 3.733 4 O -0.400 6.400 5 C 0.008 3.992 6 H 0.144 0.856 7 N -0.323 5.323 8 C -0.173 4.173 9 C 0.299 3.701 10 O -0.391 6.391 11 N -0.380 5.380 12 C 0.054 3.946 13 H 0.096 0.904 14 C -0.153 4.153 15 C -0.024 4.024 16 C -0.508 4.508 17 C -0.127 4.127 18 N -0.523 5.523 19 Si 0.706 3.294 20 H -0.181 1.181 21 H -0.210 1.210 22 H -0.213 1.213 23 C -0.060 4.060 24 C -0.152 4.152 25 H 0.120 0.880 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.162 0.838 29 H 0.163 0.837 30 H 0.122 0.878 31 H 0.114 0.886 32 H 0.224 0.776 33 H 0.056 0.944 34 H 0.065 0.935 35 H 0.025 0.975 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.061 0.939 39 H 0.038 0.962 40 H 0.072 0.928 41 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -19.770 -5.442 -4.767 21.052 hybrid contribution -1.398 -0.157 1.231 1.870 sum -21.168 -5.598 -3.536 22.180 Atomic orbital electron populations 1.23287 0.76672 1.03775 1.02461 1.86589 1.23325 1.33750 1.83526 1.25912 0.94133 0.81530 0.71739 1.90664 1.67297 1.36504 1.45579 1.21110 0.82902 0.96157 0.99057 0.85635 1.59019 1.64115 1.01388 1.07811 1.21650 0.95449 1.04744 0.95506 1.19945 0.88452 0.77279 0.84438 1.90741 1.70152 1.47646 1.30582 1.46381 1.08741 1.73754 1.09081 1.21014 0.76094 0.97901 0.99631 0.90447 1.21961 1.00063 0.94053 0.99225 1.19321 0.89096 0.98830 0.95191 1.20065 1.18052 0.96978 1.15663 1.24860 0.95151 0.95076 0.97606 1.69914 1.22320 1.22983 1.37091 0.86766 0.78454 0.80848 0.83332 1.18114 1.20965 1.21303 1.19921 0.90686 0.97448 0.97924 1.21869 0.99999 0.96685 0.96628 0.88022 0.91908 0.91996 0.83842 0.83743 0.87846 0.88583 0.77644 0.94445 0.93524 0.97531 0.92796 0.92704 0.93873 0.96239 0.92751 0.94544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.56 101.05 1.07 1.28 16 2 O -0.36 -3.35 10.57 -39.27 -0.41 -3.77 16 3 C 0.43 4.46 7.19 36.00 0.26 4.72 16 4 O -0.51 -6.41 16.00 -18.75 -0.30 -6.71 16 5 C 0.12 1.30 2.82 -68.86 -0.19 1.10 16 6 H 0.13 1.36 7.96 -51.93 -0.41 0.94 16 7 N -0.79 -9.00 8.13 -5.65 -0.05 -9.05 16 8 C -0.13 -1.36 5.33 -27.88 -0.15 -1.51 16 9 C 0.51 7.66 7.65 -10.98 -0.08 7.57 16 10 O -0.52 -9.80 15.02 5.56 0.08 -9.72 16 11 N -0.73 -10.91 5.07 -53.85 -0.27 -11.19 16 12 C 0.16 3.00 2.35 -67.98 -0.16 2.84 16 13 H 0.08 1.66 7.58 -51.92 -0.39 1.27 16 14 C -0.11 -2.50 5.50 -26.64 -0.15 -2.64 16 15 C 0.01 0.35 5.93 -27.48 -0.16 0.19 16 16 C -0.49 -12.80 5.48 -98.91 -0.54 -13.34 16 17 C 0.08 2.06 5.44 -17.82 -0.10 1.96 16 18 N -0.89 -25.63 12.82 55.43 0.71 -24.91 16 19 Si 0.88 20.44 27.95 -169.99 -4.75 15.69 16 20 H -0.26 -5.61 5.58 56.52 0.32 -5.29 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 23 C -0.02 -0.50 5.66 -27.47 -0.16 -0.65 16 24 C -0.11 -2.16 5.40 -26.63 -0.14 -2.31 16 25 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.41 8.13 -51.92 -0.42 -0.01 16 27 H 0.06 0.41 8.13 -51.93 -0.42 -0.01 16 28 H 0.35 3.45 9.06 -39.29 -0.36 3.10 16 29 H 0.35 3.75 8.58 -39.29 -0.34 3.42 16 30 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.39 4.63 8.60 -40.82 -0.35 4.28 16 33 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 35 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16 36 H 0.05 1.51 7.19 -51.93 -0.37 1.13 16 37 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 38 H 0.04 0.97 4.36 -51.93 -0.23 0.74 16 39 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 LS Contribution 335.85 15.07 5.06 5.06 Total: -1.00 -32.39 335.85 -6.76 -39.15 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: -6.32 Total: 6.23 kcal Atomic # 6 Polarization: -0.28 SS G_CDS: -0.51 Total: -0.79 kcal Atomic # 7 Polarization: -45.54 SS G_CDS: 0.39 Total: -45.15 kcal Atomic # 8 Polarization: -19.56 SS G_CDS: -0.63 Total: -20.19 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -4.75 Total: 15.69 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.39 -6.76 -39.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220094762.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.236 kcal (2) G-P(sol) polarization free energy of solvation -32.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds