Wall clock time and date at job start Tue Mar 31 2020 06:25:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34233 * 117.00139 * 2 1 4 4 O 1.20822 * 119.99829 * 0.02562 * 3 2 1 5 5 C 1.50698 * 119.99939 * 180.02562 * 3 2 1 6 6 H 1.09005 * 109.47198 * 40.00160 * 5 3 2 7 7 N 1.46903 * 109.46859 * 159.99819 * 5 3 2 8 8 C 1.53000 * 109.47050 * 280.00179 * 5 3 2 9 9 C 1.50697 * 109.46800 * 174.99999 * 8 5 3 10 10 O 1.21283 * 120.00450 * 0.02562 * 9 8 5 11 11 N 1.34783 * 119.99776 * 179.97438 * 9 8 5 12 12 C 1.46502 * 119.99788 * 180.02562 * 11 9 8 13 13 H 1.09007 * 109.35395 * 324.81911 * 12 11 9 14 14 C 1.52951 * 109.41726 * 84.64817 * 12 11 9 15 15 C 1.53229 * 109.40668 * 183.70668 * 14 12 11 16 16 C 1.51275 * 108.53216 * 305.36788 * 15 14 12 17 17 C 1.37875 * 120.85201 * 231.36732 * 16 15 14 18 18 N 1.31519 * 119.99836 * 348.85315 * 17 16 15 19 19 Si 1.86804 * 120.00046 * 168.84618 * 17 16 15 20 20 H 1.48496 * 109.46885 * 354.66471 * 19 17 16 21 21 H 1.48502 * 109.46992 * 114.66209 * 19 17 16 22 22 H 1.48500 * 109.47152 * 234.66080 * 19 17 16 23 23 C 1.51298 * 118.30644 * 51.35079 * 16 15 14 24 24 C 1.52958 * 109.40847 * 205.00125 * 12 11 9 25 25 H 1.08995 * 109.47279 * 180.02562 * 1 2 3 26 26 H 1.09008 * 109.46760 * 299.99589 * 1 2 3 27 27 H 1.08995 * 109.47271 * 59.99470 * 1 2 3 28 28 H 1.00894 * 111.00279 * 296.04761 * 7 5 3 29 29 H 1.00897 * 110.99528 * 60.00512 * 7 5 3 30 30 H 1.09000 * 109.47019 * 55.00071 * 8 5 3 31 31 H 1.08996 * 109.46980 * 294.99951 * 8 5 3 32 32 H 0.96994 * 119.99816 * 359.97438 * 11 9 8 33 33 H 1.09005 * 109.48190 * 303.67798 * 14 12 11 34 34 H 1.08997 * 109.48409 * 63.70446 * 14 12 11 35 35 H 1.08993 * 109.62681 * 65.08160 * 15 14 12 36 36 H 1.08995 * 109.62832 * 185.66066 * 15 14 12 37 37 H 0.96997 * 119.99489 * 180.02562 * 18 17 16 38 38 H 1.09003 * 109.64489 * 188.94293 * 23 16 15 39 39 H 1.08997 * 109.62809 * 68.35868 * 23 16 15 40 40 H 1.08999 * 109.48508 * 296.26699 * 24 12 11 41 41 H 1.09001 * 109.48681 * 56.30378 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 -0.0006 6 1 3.9702 0.5078 -0.6615 7 7 3.9871 2.6002 -0.4742 8 6 4.0893 1.0510 1.4197 9 6 5.5956 1.0075 1.3993 10 8 6.1921 1.1427 0.3520 11 7 6.2798 0.8194 2.5452 12 6 7.7441 0.7776 2.5254 13 1 8.0796 0.3029 1.6033 14 6 8.2944 2.2031 2.5928 15 6 9.8220 2.1651 2.4789 16 6 10.3608 1.2379 3.5459 17 6 11.3628 1.6486 4.3992 18 7 12.0135 2.7661 4.1597 19 14 11.7962 0.6177 5.8956 20 1 10.8406 -0.5130 6.0113 21 1 13.1754 0.0872 5.7486 22 1 11.7172 1.4596 7.1164 23 6 9.7717 -0.1516 3.6532 24 6 8.2458 -0.0292 3.7242 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 3.7092 2.7466 -1.4331 29 1 3.6252 3.3290 0.1224 30 1 3.7037 0.1068 1.8043 31 1 3.7581 1.8672 2.0617 32 1 5.8028 0.7124 3.3829 33 1 7.8833 2.7907 1.7719 34 1 8.0116 2.6575 3.5423 35 1 10.1066 1.7945 1.4942 36 1 10.2252 3.1668 2.6269 37 1 12.7188 3.0548 4.7599 38 1 10.1423 -0.6381 4.5554 39 1 10.0516 -0.7365 2.7771 40 1 7.9645 0.4779 4.6471 41 1 7.8002 -1.0237 3.7054 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001220094762.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:26 Heat of formation + Delta-G solvation = -160.891505 kcal Electronic energy + Delta-G solvation = -22666.263334 eV Core-core repulsion = 19158.474772 eV Total energy + Delta-G solvation = -3507.788562 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.78692 -40.69251 -38.48924 -37.77994 -35.95119 -35.21675 -33.39035 -31.45084 -30.89304 -29.27922 -28.48931 -25.70555 -23.80079 -23.37222 -21.78209 -21.25561 -20.92001 -19.09462 -18.38629 -17.96442 -17.73580 -17.03635 -16.99779 -16.73082 -16.35206 -15.95270 -15.22678 -14.89821 -14.72688 -14.54593 -14.39950 -14.25784 -13.95951 -13.92836 -13.36690 -13.04426 -12.94480 -12.74841 -12.65231 -12.56307 -12.45063 -11.91766 -11.86546 -11.84564 -11.75290 -11.19944 -10.98816 -10.70999 -10.50609 -10.43480 -9.93389 -9.73390 -8.14020 -6.07944 0.94913 1.43527 1.46419 1.56123 1.63070 1.89267 2.43888 2.45907 3.13726 3.31507 3.64409 3.74884 3.98892 4.10209 4.25888 4.28528 4.30930 4.34676 4.57903 4.59529 4.68035 4.70705 4.76799 4.96543 5.05883 5.10741 5.25128 5.26260 5.30563 5.33821 5.61051 5.63443 5.79635 5.82370 5.86501 5.93100 6.33071 6.38078 6.58482 6.82883 6.97871 7.49622 7.53995 8.97710 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.040157 B = 0.003160 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.089220 B = 8859.833221 C = 9256.381208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.360 6.360 3 C 0.437 3.563 4 O -0.535 6.535 5 C 0.124 3.876 6 H 0.122 0.878 7 N -0.810 5.810 8 C -0.121 4.121 9 C 0.513 3.487 10 O -0.562 6.562 11 N -0.718 5.718 12 C 0.169 3.831 13 H 0.053 0.947 14 C -0.100 4.100 15 C 0.010 3.990 16 C -0.500 4.500 17 C 0.016 3.984 18 N -0.935 5.935 19 Si 0.941 3.059 20 H -0.226 1.226 21 H -0.288 1.288 22 H -0.289 1.289 23 C -0.026 4.026 24 C -0.105 4.105 25 H 0.130 0.870 26 H 0.064 0.936 27 H 0.059 0.941 28 H 0.352 0.648 29 H 0.350 0.650 30 H 0.137 0.863 31 H 0.114 0.886 32 H 0.412 0.588 33 H 0.027 0.973 34 H 0.048 0.952 35 H -0.014 1.014 36 H 0.017 0.983 37 H 0.262 0.738 38 H 0.052 0.948 39 H 0.016 0.984 40 H 0.064 0.936 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.506 -8.057 -2.650 24.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.274 6.274 3 C 0.279 3.721 4 O -0.425 6.425 5 C 0.009 3.991 6 H 0.140 0.860 7 N -0.340 5.340 8 C -0.161 4.161 9 C 0.299 3.701 10 O -0.439 6.439 11 N -0.370 5.370 12 C 0.064 3.936 13 H 0.071 0.929 14 C -0.139 4.139 15 C -0.028 4.028 16 C -0.519 4.519 17 C -0.182 4.182 18 N -0.575 5.575 19 Si 0.766 3.234 20 H -0.149 1.149 21 H -0.214 1.214 22 H -0.215 1.215 23 C -0.063 4.063 24 C -0.143 4.143 25 H 0.149 0.851 26 H 0.083 0.917 27 H 0.078 0.922 28 H 0.166 0.834 29 H 0.164 0.836 30 H 0.155 0.845 31 H 0.132 0.868 32 H 0.248 0.752 33 H 0.046 0.954 34 H 0.066 0.934 35 H 0.004 0.996 36 H 0.036 0.964 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.034 0.966 40 H 0.083 0.917 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -22.445 -7.822 -3.213 23.986 hybrid contribution -0.605 0.601 0.620 1.054 sum -23.050 -7.221 -2.593 24.294 Atomic orbital electron populations 1.23569 0.75040 1.05746 1.02475 1.86572 1.24894 1.32907 1.83059 1.25688 0.93847 0.81508 0.71099 1.90661 1.67721 1.37322 1.46780 1.21058 0.83159 0.95613 0.99244 0.86026 1.59049 1.64618 1.01988 1.08349 1.21620 0.91407 1.07248 0.95796 1.20702 0.90301 0.75631 0.83419 1.90735 1.71524 1.49434 1.32229 1.46083 1.06830 1.73659 1.10436 1.20544 0.78742 0.95403 0.98900 0.92865 1.21744 0.97084 0.96356 0.98763 1.19270 0.92092 0.96982 0.94413 1.20659 1.17668 0.98650 1.14933 1.25770 0.95247 0.96332 1.00843 1.70078 1.23499 1.25405 1.38511 0.85772 0.78441 0.79996 0.79155 1.14899 1.21404 1.21525 1.19938 0.93350 0.94927 0.98131 1.21729 0.97256 0.98713 0.96581 0.85139 0.91741 0.92202 0.83356 0.83554 0.84492 0.86787 0.75217 0.95432 0.93357 0.99591 0.96392 0.92931 0.92986 0.96555 0.91729 0.90924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.56 113.37 1.20 1.47 16 2 O -0.36 -5.80 10.57 -51.45 -0.54 -6.35 16 3 C 0.44 8.23 7.19 71.24 0.51 8.74 16 4 O -0.54 -12.52 16.00 21.98 0.35 -12.17 16 5 C 0.12 2.40 2.82 44.17 0.12 2.52 16 6 H 0.12 2.46 7.96 -2.38 -0.02 2.44 16 7 N -0.81 -17.75 8.13 -171.79 -1.40 -19.14 16 8 C -0.12 -2.09 5.33 29.85 0.16 -1.93 16 9 C 0.51 14.17 7.65 87.66 0.67 14.84 16 10 O -0.56 -21.00 15.02 -3.04 -0.05 -21.05 16 11 N -0.72 -19.45 5.07 -442.66 -2.25 -21.70 16 12 C 0.17 6.22 2.35 44.96 0.11 6.33 16 13 H 0.05 2.25 7.58 -2.38 -0.02 2.24 16 14 C -0.10 -4.43 5.50 30.65 0.17 -4.26 16 15 C 0.01 0.56 5.93 30.11 0.18 0.74 16 16 C -0.50 -26.36 5.48 -16.16 -0.09 -26.45 16 17 C 0.02 0.87 5.44 84.65 0.46 1.33 16 18 N -0.94 -56.06 12.82 21.45 0.28 -55.79 16 19 Si 0.94 41.55 27.95 68.60 1.92 43.47 16 20 H -0.23 -8.77 5.58 99.48 0.56 -8.21 16 21 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 22 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 23 C -0.03 -1.11 5.66 30.12 0.17 -0.94 16 24 C -0.10 -3.64 5.40 30.66 0.17 -3.47 16 25 H 0.13 0.62 8.14 -2.39 -0.02 0.60 16 26 H 0.06 0.69 8.13 -2.38 -0.02 0.67 16 27 H 0.06 0.68 8.13 -2.39 -0.02 0.66 16 28 H 0.35 6.90 9.06 -89.70 -0.81 6.09 16 29 H 0.35 7.24 8.58 -89.70 -0.77 6.47 16 30 H 0.14 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.41 7.98 8.60 -92.71 -0.80 7.19 16 33 H 0.03 1.23 8.14 -2.38 -0.02 1.21 16 34 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 35 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 36 H 0.02 1.04 7.19 -2.39 -0.02 1.03 16 37 H 0.26 14.84 8.31 -92.71 -0.77 14.06 16 38 H 0.05 2.15 4.36 -2.39 -0.01 2.14 16 39 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 41 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -72.83 335.85 0.68 -72.15 By element: Atomic # 1 Polarization: 23.11 SS G_CDS: -1.46 Total: 21.65 kcal Atomic # 6 Polarization: -4.90 SS G_CDS: 3.82 Total: -1.08 kcal Atomic # 7 Polarization: -93.26 SS G_CDS: -3.37 Total: -96.63 kcal Atomic # 8 Polarization: -39.33 SS G_CDS: -0.24 Total: -39.56 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 1.92 Total: 43.47 kcal Total: -72.83 0.68 -72.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220094762.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.742 kcal (2) G-P(sol) polarization free energy of solvation -72.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds