Wall clock time and date at job start Tue Mar 31 2020 06:16:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 O 1.20819 * 119.99507 * 2 1 4 4 O 1.34221 * 119.99942 * 179.97438 * 2 1 3 5 5 C 1.45205 * 116.99949 * 180.02562 * 4 2 1 6 6 C 1.53003 * 109.47382 * 180.02562 * 5 4 2 7 7 H 1.08994 * 109.47413 * 54.99546 * 6 5 4 8 8 N 1.46899 * 109.46642 * 294.99438 * 6 5 4 9 9 C 1.50698 * 109.47045 * 174.99986 * 6 5 4 10 10 O 1.21283 * 120.00472 * 99.99838 * 9 6 5 11 11 N 1.34777 * 119.99538 * 279.99176 * 9 6 5 12 12 C 1.46499 * 119.99665 * 179.72653 * 11 9 6 13 13 H 1.09004 * 109.41774 * 325.27844 * 12 11 9 14 14 C 1.52951 * 109.41524 * 85.13842 * 12 11 9 15 15 C 1.53242 * 109.40159 * 183.77418 * 14 12 11 16 16 C 1.51269 * 108.48359 * 305.26158 * 15 14 12 17 17 C 1.37870 * 120.85160 * 231.36388 * 16 15 14 18 18 N 1.31520 * 119.99804 * 180.02562 * 17 16 15 19 19 Si 1.86800 * 120.00315 * 0.02918 * 17 16 15 20 20 H 1.48494 * 109.47158 * 89.99129 * 19 17 16 21 21 H 1.48501 * 109.47039 * 209.99895 * 19 17 16 22 22 H 1.48505 * 109.46595 * 329.99700 * 19 17 16 23 23 C 1.51273 * 118.29469 * 51.39010 * 16 15 14 24 24 C 1.52963 * 109.41419 * 205.42121 * 12 11 9 25 25 H 1.09002 * 109.46522 * 240.00108 * 1 2 3 26 26 H 1.08997 * 109.47052 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.46795 * 120.00454 * 1 2 3 28 28 H 1.08994 * 109.47319 * 59.99519 * 5 4 2 29 29 H 1.09004 * 109.46675 * 300.00020 * 5 4 2 30 30 H 1.00900 * 110.99932 * 176.04558 * 8 6 5 31 31 H 1.00903 * 111.00374 * 300.00267 * 8 6 5 32 32 H 0.97001 * 120.00485 * 0.02562 * 11 9 6 33 33 H 1.09004 * 109.48442 * 303.68306 * 14 12 11 34 34 H 1.09000 * 109.48236 * 63.72176 * 14 12 11 35 35 H 1.08999 * 109.61934 * 185.58284 * 15 14 12 36 36 H 1.08999 * 109.68485 * 64.98147 * 15 14 12 37 37 H 0.97001 * 119.99386 * 180.02562 * 18 17 16 38 38 H 1.08997 * 109.62203 * 188.93310 * 23 16 15 39 39 H 1.09001 * 109.78626 * 68.46388 * 23 16 15 40 40 H 1.08996 * 109.47839 * 296.27527 * 24 12 11 41 41 H 1.09000 * 109.47990 * 56.31601 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1111 1.0464 0.0000 4 8 2.1782 -1.1624 0.0005 5 6 3.6282 -1.0864 0.0011 6 6 4.2131 -2.5002 0.0010 7 1 3.8076 -3.0611 -0.8410 8 7 3.8590 -3.1766 1.2560 9 6 5.7131 -2.4233 -0.1223 10 8 6.4094 -2.5401 0.8638 11 7 6.2807 -2.2248 -1.3285 12 6 7.7386 -2.1441 -1.4475 13 1 8.1485 -1.6618 -0.5600 14 6 8.3174 -3.5543 -1.5729 15 6 9.8475 -3.4757 -1.6025 16 6 10.2580 -2.5340 -2.7129 17 6 11.1858 -2.9171 -3.6580 18 7 11.5309 -2.0846 -4.6159 19 14 11.9528 -4.6185 -3.5781 20 1 11.1272 -5.5709 -4.3632 21 1 13.3251 -4.5699 -4.1434 22 1 12.0156 -5.0671 -2.1638 23 6 9.6248 -1.1610 -2.7593 24 6 8.1030 -1.3235 -2.6859 25 1 -0.3632 -0.5138 0.8900 26 1 -0.3633 1.0276 0.0005 27 1 -0.3633 -0.5139 -0.8900 28 1 3.9639 -0.5540 0.8910 29 1 3.9645 -0.5544 -0.8890 30 1 4.1785 -4.1336 1.2536 31 1 4.2238 -2.6756 2.0522 32 1 5.7238 -2.1311 -2.1172 33 1 8.0016 -4.1541 -0.7193 34 1 7.9580 -4.0142 -2.4935 35 1 10.2613 -4.4664 -1.7910 36 1 10.2144 -3.0984 -0.6480 37 1 12.1834 -2.3543 -5.2811 38 1 9.8956 -0.6643 -3.6910 39 1 9.9707 -0.5664 -1.9137 40 1 7.7488 -1.8374 -3.5795 41 1 7.6351 -0.3411 -2.6217 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001220095410.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:58 Heat of formation + Delta-G solvation = -144.299980 kcal Electronic energy + Delta-G solvation = -22669.100092 eV Core-core repulsion = 19162.030993 eV Total energy + Delta-G solvation = -3507.069099 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.69275 -39.86782 -37.21532 -36.68360 -34.46183 -33.86234 -31.65663 -30.77626 -29.75024 -28.65743 -27.20840 -24.09628 -22.01658 -21.54630 -21.38428 -20.09953 -19.50421 -18.00802 -17.23586 -16.98032 -16.69323 -16.11299 -15.86781 -15.53037 -14.57845 -14.46771 -14.31896 -13.94055 -13.38101 -13.27890 -13.14384 -12.91442 -12.78538 -12.42823 -12.33126 -12.13852 -11.77299 -11.64039 -11.10063 -10.89629 -10.88066 -10.81224 -10.76722 -10.37317 -10.12341 -10.03375 -9.70727 -9.18253 -9.03842 -8.79178 -8.51836 -8.43418 -6.15548 -4.06618 1.97303 2.20246 2.77608 3.23000 3.32674 3.34948 3.41407 4.17262 4.34276 4.40681 4.59720 4.70759 4.80088 4.94700 4.95616 5.12520 5.15886 5.30112 5.42923 5.63184 5.79217 6.10091 6.21740 6.34827 6.39967 6.62872 6.64062 6.73181 6.80614 6.88551 7.01958 7.13050 7.15849 7.36963 7.51293 7.58761 7.62811 7.66495 7.80170 8.29354 8.32501 8.90683 9.49407 10.93979 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.031742 B = 0.003348 C = 0.003141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.900432 B = 8362.105100 C = 8913.607376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.456 3.544 3 O -0.516 6.516 4 O -0.340 6.340 5 C 0.084 3.916 6 C 0.074 3.926 7 H 0.113 0.887 8 N -0.813 5.813 9 C 0.478 3.522 10 O -0.540 6.540 11 N -0.716 5.716 12 C 0.151 3.849 13 H 0.079 0.921 14 C -0.112 4.112 15 C -0.013 4.013 16 C -0.491 4.491 17 C 0.076 3.924 18 N -0.889 5.889 19 Si 0.889 3.111 20 H -0.278 1.278 21 H -0.289 1.289 22 H -0.267 1.267 23 C 0.013 3.987 24 C -0.115 4.115 25 H 0.100 0.900 26 H 0.099 0.901 27 H 0.100 0.900 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.349 0.651 31 H 0.350 0.650 32 H 0.396 0.604 33 H 0.035 0.965 34 H 0.052 0.948 35 H 0.031 0.969 36 H 0.019 0.981 37 H 0.265 0.735 38 H 0.061 0.939 39 H 0.006 0.994 40 H 0.055 0.945 41 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.139 -0.159 6.228 21.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.300 3.700 3 O -0.405 6.405 4 O -0.256 6.256 5 C 0.009 3.991 6 C -0.042 4.042 7 H 0.131 0.869 8 N -0.343 5.343 9 C 0.261 3.739 10 O -0.417 6.417 11 N -0.365 5.365 12 C 0.048 3.952 13 H 0.097 0.903 14 C -0.151 4.151 15 C -0.051 4.051 16 C -0.510 4.510 17 C -0.126 4.126 18 N -0.527 5.527 19 Si 0.717 3.283 20 H -0.204 1.204 21 H -0.216 1.216 22 H -0.192 1.192 23 C -0.025 4.025 24 C -0.153 4.153 25 H 0.119 0.881 26 H 0.118 0.882 27 H 0.118 0.882 28 H 0.095 0.905 29 H 0.099 0.901 30 H 0.162 0.838 31 H 0.164 0.836 32 H 0.229 0.771 33 H 0.054 0.946 34 H 0.070 0.930 35 H 0.050 0.950 36 H 0.037 0.963 37 H 0.075 0.925 38 H 0.080 0.920 39 H 0.024 0.976 40 H 0.074 0.926 41 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -20.052 0.216 6.566 21.101 hybrid contribution 1.353 -0.942 -0.397 1.696 sum -18.700 -0.726 6.169 19.705 Atomic orbital electron populations 1.21629 0.87032 1.05781 1.05805 1.23898 0.92233 0.81661 0.72256 1.90721 1.70973 1.33245 1.45521 1.86540 1.21266 1.34268 1.83533 1.22848 0.76970 0.95713 1.03570 1.21555 0.90139 0.95712 0.96791 0.86869 1.59118 1.65368 1.07041 1.02753 1.21514 0.90989 0.77330 0.84096 1.90723 1.64022 1.49897 1.37071 1.46575 1.09694 1.71405 1.08837 1.21137 0.76354 0.97694 1.00028 0.90331 1.21900 0.99384 0.94643 0.99184 1.19716 0.90981 0.96942 0.97488 1.20034 1.22724 0.98718 1.09482 1.24843 0.95857 0.97208 0.94730 1.69834 1.32518 1.35616 1.14723 0.86651 0.78574 0.84680 0.78428 1.20416 1.21577 1.19172 1.19331 0.88305 0.96280 0.98557 1.21941 1.01542 0.96436 0.95387 0.88136 0.88195 0.88192 0.90477 0.90059 0.83794 0.83615 0.77065 0.94641 0.92959 0.95013 0.96260 0.92530 0.92028 0.97568 0.92616 0.94546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 10.43 36.01 0.38 -0.39 16 2 C 0.46 4.64 8.07 36.01 0.29 4.93 16 3 O -0.52 -7.18 16.83 -18.74 -0.32 -7.49 16 4 O -0.34 -3.59 10.17 -39.23 -0.40 -3.98 16 5 C 0.08 0.93 5.04 37.16 0.19 1.12 16 6 C 0.07 0.81 3.43 -68.86 -0.24 0.57 16 7 H 0.11 1.05 8.14 -51.93 -0.42 0.62 16 8 N -0.81 -8.62 8.94 -5.66 -0.05 -8.67 16 9 C 0.48 6.96 7.03 -10.99 -0.08 6.88 16 10 O -0.54 -9.89 15.91 5.55 0.09 -9.81 16 11 N -0.72 -10.52 5.07 -53.85 -0.27 -10.79 16 12 C 0.15 2.85 2.35 -67.98 -0.16 2.69 16 13 H 0.08 1.67 7.57 -51.93 -0.39 1.27 16 14 C -0.11 -2.29 5.50 -26.63 -0.15 -2.44 16 15 C -0.01 -0.31 5.60 -27.48 -0.15 -0.46 16 16 C -0.49 -12.73 5.51 -98.92 -0.55 -13.27 16 17 C 0.08 2.06 5.46 -17.82 -0.10 1.96 16 18 N -0.89 -25.18 12.73 55.43 0.71 -24.48 16 19 Si 0.89 20.96 27.27 -169.99 -4.64 16.33 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 22 H -0.27 -6.17 6.46 56.52 0.37 -5.80 16 23 C 0.01 0.32 5.97 -27.49 -0.16 0.16 16 24 C -0.11 -2.28 5.40 -26.63 -0.14 -2.42 16 25 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.10 0.46 8.12 -51.93 -0.42 0.04 16 27 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.08 0.94 8.13 -51.93 -0.42 0.52 16 29 H 0.08 0.88 8.13 -51.93 -0.42 0.45 16 30 H 0.35 3.47 9.06 -39.29 -0.36 3.12 16 31 H 0.35 3.89 8.58 -39.29 -0.34 3.55 16 32 H 0.40 4.67 8.60 -40.82 -0.35 4.32 16 33 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.03 0.74 4.78 -51.93 -0.25 0.49 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.26 7.12 8.31 -40.82 -0.34 6.79 16 38 H 0.06 1.63 7.07 -51.93 -0.37 1.26 16 39 H 0.01 0.15 8.14 -51.93 -0.42 -0.28 16 40 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 339.04 15.07 5.11 5.11 Total: -1.00 -31.92 339.04 -6.94 -38.86 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -6.30 Total: 5.59 kcal Atomic # 6 Polarization: 0.20 SS G_CDS: -0.87 Total: -0.67 kcal Atomic # 7 Polarization: -44.32 SS G_CDS: 0.38 Total: -43.94 kcal Atomic # 8 Polarization: -20.66 SS G_CDS: -0.63 Total: -21.28 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -4.64 Total: 16.33 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.92 -6.94 -38.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220095410.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.441 kcal (2) G-P(sol) polarization free energy of solvation -31.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds