Wall clock time and date at job start Tue Mar 31 2020 06:16:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 O 1.20819 * 119.99507 * 2 1 4 4 O 1.34221 * 119.99942 * 179.97438 * 2 1 3 5 5 C 1.45205 * 116.99949 * 180.02562 * 4 2 1 6 6 C 1.53003 * 109.47382 * 180.02562 * 5 4 2 7 7 H 1.08994 * 109.47413 * 54.99546 * 6 5 4 8 8 N 1.46899 * 109.46642 * 294.99438 * 6 5 4 9 9 C 1.50698 * 109.47045 * 174.99986 * 6 5 4 10 10 O 1.21283 * 120.00472 * 99.99838 * 9 6 5 11 11 N 1.34777 * 119.99538 * 279.99176 * 9 6 5 12 12 C 1.46499 * 119.99665 * 179.72653 * 11 9 6 13 13 H 1.09004 * 109.41774 * 325.27844 * 12 11 9 14 14 C 1.52951 * 109.41524 * 85.13842 * 12 11 9 15 15 C 1.53242 * 109.40159 * 183.77418 * 14 12 11 16 16 C 1.51269 * 108.48359 * 305.26158 * 15 14 12 17 17 C 1.37870 * 120.85160 * 231.36388 * 16 15 14 18 18 N 1.31520 * 119.99804 * 180.02562 * 17 16 15 19 19 Si 1.86800 * 120.00315 * 0.02918 * 17 16 15 20 20 H 1.48494 * 109.47158 * 89.99129 * 19 17 16 21 21 H 1.48501 * 109.47039 * 209.99895 * 19 17 16 22 22 H 1.48505 * 109.46595 * 329.99700 * 19 17 16 23 23 C 1.51273 * 118.29469 * 51.39010 * 16 15 14 24 24 C 1.52963 * 109.41419 * 205.42121 * 12 11 9 25 25 H 1.09002 * 109.46522 * 240.00108 * 1 2 3 26 26 H 1.08997 * 109.47052 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.46795 * 120.00454 * 1 2 3 28 28 H 1.08994 * 109.47319 * 59.99519 * 5 4 2 29 29 H 1.09004 * 109.46675 * 300.00020 * 5 4 2 30 30 H 1.00900 * 110.99932 * 176.04558 * 8 6 5 31 31 H 1.00903 * 111.00374 * 300.00267 * 8 6 5 32 32 H 0.97001 * 120.00485 * 0.02562 * 11 9 6 33 33 H 1.09004 * 109.48442 * 303.68306 * 14 12 11 34 34 H 1.09000 * 109.48236 * 63.72176 * 14 12 11 35 35 H 1.08999 * 109.61934 * 185.58284 * 15 14 12 36 36 H 1.08999 * 109.68485 * 64.98147 * 15 14 12 37 37 H 0.97001 * 119.99386 * 180.02562 * 18 17 16 38 38 H 1.08997 * 109.62203 * 188.93310 * 23 16 15 39 39 H 1.09001 * 109.78626 * 68.46388 * 23 16 15 40 40 H 1.08996 * 109.47839 * 296.27527 * 24 12 11 41 41 H 1.09000 * 109.47990 * 56.31601 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1111 1.0464 0.0000 4 8 2.1782 -1.1624 0.0005 5 6 3.6282 -1.0864 0.0011 6 6 4.2131 -2.5002 0.0010 7 1 3.8076 -3.0611 -0.8410 8 7 3.8590 -3.1766 1.2560 9 6 5.7131 -2.4233 -0.1223 10 8 6.4094 -2.5401 0.8638 11 7 6.2807 -2.2248 -1.3285 12 6 7.7386 -2.1441 -1.4475 13 1 8.1485 -1.6618 -0.5600 14 6 8.3174 -3.5543 -1.5729 15 6 9.8475 -3.4757 -1.6025 16 6 10.2580 -2.5340 -2.7129 17 6 11.1858 -2.9171 -3.6580 18 7 11.5309 -2.0846 -4.6159 19 14 11.9528 -4.6185 -3.5781 20 1 11.1272 -5.5709 -4.3632 21 1 13.3251 -4.5699 -4.1434 22 1 12.0156 -5.0671 -2.1638 23 6 9.6248 -1.1610 -2.7593 24 6 8.1030 -1.3235 -2.6859 25 1 -0.3632 -0.5138 0.8900 26 1 -0.3633 1.0276 0.0005 27 1 -0.3633 -0.5139 -0.8900 28 1 3.9639 -0.5540 0.8910 29 1 3.9645 -0.5544 -0.8890 30 1 4.1785 -4.1336 1.2536 31 1 4.2238 -2.6756 2.0522 32 1 5.7238 -2.1311 -2.1172 33 1 8.0016 -4.1541 -0.7193 34 1 7.9580 -4.0142 -2.4935 35 1 10.2613 -4.4664 -1.7910 36 1 10.2144 -3.0984 -0.6480 37 1 12.1834 -2.3543 -5.2811 38 1 9.8956 -0.6643 -3.6910 39 1 9.9707 -0.5664 -1.9137 40 1 7.7488 -1.8374 -3.5795 41 1 7.6351 -0.3411 -2.6217 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001220095410.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:57 Heat of formation + Delta-G solvation = -168.211720 kcal Electronic energy + Delta-G solvation = -22670.136983 eV Core-core repulsion = 19162.030993 eV Total energy + Delta-G solvation = -3508.105990 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.60564 -41.03763 -38.70796 -37.71064 -35.49244 -35.42810 -33.43928 -31.53771 -31.34701 -29.78503 -28.67566 -25.30707 -23.65263 -23.29790 -22.18569 -21.42135 -21.08093 -18.93889 -18.32398 -18.10405 -17.63609 -17.52176 -17.20341 -16.45436 -16.40494 -15.71319 -15.53851 -15.11877 -14.87238 -14.56547 -14.24600 -14.05254 -13.97240 -13.86080 -13.54071 -13.43402 -13.04809 -12.83278 -12.73670 -12.61597 -12.47810 -11.96703 -11.87951 -11.78159 -11.66874 -11.53778 -11.38099 -10.96397 -10.74516 -10.57313 -9.98554 -9.87761 -8.20173 -6.14775 1.20455 1.23386 1.36009 1.40388 1.48657 1.77373 2.27168 2.38652 3.08259 3.29334 3.56988 3.70670 3.86660 3.92253 4.02470 4.16166 4.29299 4.44138 4.45638 4.59303 4.64620 4.67161 4.80063 4.92035 4.99466 5.02617 5.07437 5.18545 5.19488 5.47630 5.51578 5.52978 5.62638 5.72386 5.78126 5.86606 6.29521 6.31419 6.51347 6.73221 6.91027 7.14029 7.43805 8.90531 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.031742 B = 0.003348 C = 0.003141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.900432 B = 8362.105100 C = 8913.607376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.453 3.547 3 O -0.561 6.561 4 O -0.337 6.337 5 C 0.084 3.916 6 C 0.091 3.909 7 H 0.141 0.859 8 N -0.809 5.809 9 C 0.480 3.520 10 O -0.578 6.578 11 N -0.706 5.706 12 C 0.163 3.837 13 H 0.054 0.946 14 C -0.104 4.104 15 C -0.016 4.016 16 C -0.501 4.501 17 C 0.025 3.975 18 N -0.928 5.928 19 Si 0.940 3.060 20 H -0.269 1.269 21 H -0.292 1.292 22 H -0.260 1.260 23 C 0.008 3.992 24 C -0.102 4.102 25 H 0.120 0.880 26 H 0.106 0.894 27 H 0.123 0.877 28 H 0.061 0.939 29 H 0.085 0.915 30 H 0.354 0.646 31 H 0.347 0.653 32 H 0.414 0.586 33 H 0.041 0.959 34 H 0.059 0.941 35 H 0.033 0.967 36 H 0.010 0.990 37 H 0.264 0.736 38 H 0.033 0.967 39 H -0.006 1.006 40 H 0.060 0.940 41 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.807 -1.499 6.441 23.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.299 3.701 3 O -0.452 6.452 4 O -0.253 6.253 5 C 0.009 3.991 6 C -0.026 4.026 7 H 0.158 0.842 8 N -0.338 5.338 9 C 0.264 3.736 10 O -0.458 6.458 11 N -0.356 5.356 12 C 0.058 3.942 13 H 0.072 0.928 14 C -0.143 4.143 15 C -0.054 4.054 16 C -0.521 4.521 17 C -0.173 4.173 18 N -0.568 5.568 19 Si 0.766 3.234 20 H -0.194 1.194 21 H -0.218 1.218 22 H -0.184 1.184 23 C -0.030 4.030 24 C -0.140 4.140 25 H 0.138 0.862 26 H 0.124 0.876 27 H 0.141 0.859 28 H 0.080 0.920 29 H 0.103 0.897 30 H 0.168 0.832 31 H 0.160 0.840 32 H 0.251 0.749 33 H 0.060 0.940 34 H 0.078 0.922 35 H 0.052 0.948 36 H 0.028 0.972 37 H 0.073 0.927 38 H 0.052 0.948 39 H 0.013 0.987 40 H 0.079 0.921 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -22.774 -1.147 6.778 23.789 hybrid contribution 2.150 -0.462 -0.402 2.236 sum -20.624 -1.608 6.375 21.647 Atomic orbital electron populations 1.21778 0.83008 1.06924 1.07756 1.24944 0.93911 0.80719 0.70549 1.90708 1.72131 1.34605 1.47752 1.86551 1.20649 1.34688 1.83429 1.22749 0.77759 0.95543 1.03096 1.21489 0.87098 0.96064 0.97908 0.84175 1.59155 1.64815 1.07341 1.02486 1.22197 0.92464 0.75817 0.83087 1.90713 1.65336 1.51427 1.38310 1.46289 1.07937 1.71384 1.10029 1.20671 0.78865 0.96340 0.98279 0.92757 1.21764 0.97059 0.95698 0.99764 1.19723 0.93382 0.96294 0.96010 1.20581 1.22198 0.99600 1.09674 1.25573 0.96563 1.00381 0.94818 1.69958 1.33647 1.37362 1.15798 0.85818 0.77717 0.81130 0.78726 1.19417 1.21832 1.18424 1.19295 0.91701 0.95464 0.96553 1.21704 0.98198 0.97984 0.96105 0.86176 0.87556 0.85875 0.92019 0.89701 0.83182 0.83964 0.74949 0.93993 0.92231 0.94833 0.97158 0.92677 0.94801 0.98723 0.92117 0.92449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 10.43 71.24 0.74 -0.28 16 2 C 0.45 8.37 8.07 71.24 0.57 8.94 16 3 O -0.56 -15.19 16.83 21.99 0.37 -14.82 16 4 O -0.34 -6.33 10.17 -51.33 -0.52 -6.85 16 5 C 0.08 1.72 5.04 71.98 0.36 2.08 16 6 C 0.09 1.75 3.43 44.17 0.15 1.90 16 7 H 0.14 2.02 8.14 -2.39 -0.02 2.00 16 8 N -0.81 -15.33 8.94 -171.81 -1.54 -16.87 16 9 C 0.48 13.05 7.03 87.66 0.62 13.66 16 10 O -0.58 -20.61 15.91 -3.04 -0.05 -20.66 16 11 N -0.71 -19.16 5.07 -442.67 -2.25 -21.40 16 12 C 0.16 5.96 2.35 44.96 0.11 6.07 16 13 H 0.05 2.29 7.57 -2.38 -0.02 2.27 16 14 C -0.10 -4.08 5.50 30.66 0.17 -3.92 16 15 C -0.02 -0.74 5.60 30.11 0.17 -0.57 16 16 C -0.50 -26.16 5.51 -16.17 -0.09 -26.24 16 17 C 0.03 1.37 5.46 84.65 0.46 1.84 16 18 N -0.93 -53.67 12.73 21.45 0.27 -53.39 16 19 Si 0.94 42.91 27.27 68.60 1.87 44.78 16 20 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 21 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 22 H -0.26 -11.43 6.46 99.48 0.64 -10.79 16 23 C 0.01 0.39 5.97 30.11 0.18 0.57 16 24 C -0.10 -3.94 5.40 30.66 0.17 -3.77 16 25 H 0.12 0.47 8.14 -2.39 -0.02 0.46 16 26 H 0.11 0.69 8.12 -2.39 -0.02 0.67 16 27 H 0.12 0.39 8.14 -2.39 -0.02 0.38 16 28 H 0.06 1.46 8.13 -2.39 -0.02 1.44 16 29 H 0.08 1.68 8.13 -2.38 -0.02 1.66 16 30 H 0.35 6.20 9.06 -89.69 -0.81 5.39 16 31 H 0.35 7.21 8.58 -89.69 -0.77 6.44 16 32 H 0.41 8.46 8.60 -92.71 -0.80 7.66 16 33 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 34 H 0.06 2.25 8.14 -2.39 -0.02 2.24 16 35 H 0.03 1.51 4.78 -2.39 -0.01 1.50 16 36 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 37 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 38 H 0.03 1.83 7.07 -2.39 -0.02 1.82 16 39 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 40 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 41 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -70.19 339.04 0.40 -69.80 By element: Atomic # 1 Polarization: 20.52 SS G_CDS: -1.37 Total: 19.15 kcal Atomic # 6 Polarization: -3.34 SS G_CDS: 3.61 Total: 0.27 kcal Atomic # 7 Polarization: -88.15 SS G_CDS: -3.51 Total: -91.66 kcal Atomic # 8 Polarization: -42.13 SS G_CDS: -0.20 Total: -42.33 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 1.87 Total: 44.78 kcal Total: -70.19 0.40 -69.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220095410.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.416 kcal (2) G-P(sol) polarization free energy of solvation -70.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds