Wall clock time and date at job start Tue Mar 31 2020 05:31:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33395 * 125.20000 * 2 1 4 4 C 1.38423 * 114.91830 * 179.86034 * 3 2 1 5 5 C 1.33388 * 114.92511 * 0.43137 * 4 3 2 6 6 C 1.50697 * 125.20743 * 179.79132 * 5 4 3 7 7 O 1.42896 * 109.47110 * 90.00509 * 6 5 4 8 8 C 1.42900 * 114.00057 * 180.02562 * 7 6 5 9 9 H 1.09002 * 109.47175 * 29.99415 * 8 7 6 10 10 C 1.50699 * 109.46926 * 269.99804 * 8 7 6 11 11 H 1.08001 * 120.00308 * 120.00192 * 10 8 7 12 12 C 1.37884 * 120.00115 * 300.00038 * 10 8 7 13 13 N 1.31516 * 119.99666 * 359.97438 * 12 10 8 14 14 Si 1.86796 * 120.00226 * 180.02562 * 12 10 8 15 15 H 1.48491 * 109.47375 * 59.99568 * 14 12 10 16 16 H 1.48498 * 109.47109 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.46885 * 299.99561 * 14 12 10 18 18 C 1.52995 * 109.47330 * 149.99727 * 8 7 6 19 19 N 1.46898 * 109.47401 * 293.29137 * 18 8 7 20 20 C 1.46901 * 109.47029 * 64.50144 * 19 18 8 21 21 C 1.46898 * 109.47418 * 184.50367 * 19 18 8 22 22 C 1.46898 * 109.47039 * 304.50382 * 19 18 8 23 23 S 1.75885 * 125.20561 * 180.31075 * 2 1 3 24 24 H 1.09004 * 109.46714 * 179.71021 * 1 2 3 25 25 H 1.08997 * 109.47251 * 59.71780 * 1 2 3 26 26 H 1.08994 * 109.47005 * 299.71627 * 1 2 3 27 27 H 1.07991 * 122.54095 * 0.02562 * 3 2 1 28 28 H 1.07999 * 122.53806 * 180.20555 * 4 3 2 29 29 H 1.09001 * 109.47013 * 210.00430 * 6 5 4 30 30 H 1.08998 * 109.46900 * 330.00531 * 6 5 4 31 31 H 0.96999 * 120.00212 * 180.02562 * 13 12 10 32 32 H 1.09005 * 109.46941 * 53.29263 * 18 8 7 33 33 H 1.09005 * 109.47266 * 173.29015 * 18 8 7 34 34 H 1.08998 * 109.47009 * 50.75048 * 20 19 18 35 35 H 1.08995 * 109.47232 * 170.75022 * 20 19 18 36 36 H 1.09006 * 109.46954 * 290.75061 * 20 19 18 37 37 H 1.08998 * 109.47345 * 59.99649 * 21 19 18 38 38 H 1.09002 * 109.47071 * 180.02562 * 21 19 18 39 39 H 1.09003 * 109.46889 * 299.99714 * 21 19 18 40 40 H 1.09000 * 109.47179 * 59.99658 * 22 19 18 41 41 H 1.09001 * 109.47628 * 179.97438 * 22 19 18 42 42 H 1.09006 * 109.47033 * 299.99774 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0900 0.0000 4 6 3.6379 0.8430 0.0031 5 6 3.9752 -0.4476 -0.0036 6 6 5.3861 -0.9769 -0.0065 7 8 5.8323 -1.1511 1.3398 8 6 7.1663 -1.6515 1.4498 9 1 7.7515 -1.3176 0.5929 10 6 7.1367 -3.1579 1.4816 11 1 7.6522 -3.7243 0.7201 12 6 6.4515 -3.8130 2.4828 13 7 5.8242 -3.1233 3.4103 14 14 6.4154 -5.6802 2.5225 15 1 7.8017 -6.1998 2.6372 16 1 5.6186 -6.1351 3.6901 17 1 5.7975 -6.1901 1.2721 18 6 7.8032 -1.1267 2.7381 19 7 7.9790 0.3285 2.6400 20 6 6.6632 0.9758 2.5531 21 6 8.6877 0.8175 3.8302 22 6 8.7618 0.6472 1.4385 23 16 2.5210 -1.4371 -0.0078 24 1 -0.3633 -1.0277 -0.0052 25 1 -0.3633 0.5182 -0.8874 26 1 -0.3633 0.5094 0.8925 27 1 1.8669 2.0895 0.0004 28 1 4.3720 1.6351 0.0067 29 1 5.4136 -1.9351 -0.5253 30 1 6.0388 -0.2685 -0.5168 31 1 5.3425 -3.5841 4.1149 32 1 7.1559 -1.3583 3.5840 33 1 8.7740 -1.6009 2.8829 34 1 6.0247 0.6105 3.3575 35 1 6.7825 2.0553 2.6457 36 1 6.2060 0.7419 1.5916 37 1 9.6640 0.3371 3.8947 38 1 8.8176 1.8973 3.7575 39 1 8.1068 0.5810 4.7217 40 1 8.2360 0.2844 0.5554 41 1 8.8919 1.7270 1.3654 42 1 9.7382 0.1669 1.5030 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223190686.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:38 Heat of formation + Delta-G solvation = 89.288388 kcal Electronic energy + Delta-G solvation = -21599.990275 eV Core-core repulsion = 18597.573370 eV Total energy + Delta-G solvation = -3002.416905 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 284.143 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.21845 -39.08813 -38.01519 -34.61776 -33.06646 -31.42112 -30.36559 -30.15675 -29.03169 -27.60696 -25.22854 -24.72664 -23.41093 -22.55251 -19.70866 -18.93839 -18.58590 -18.25115 -17.88821 -17.63699 -16.83357 -16.07794 -15.90622 -15.52301 -15.01895 -14.81869 -14.62220 -14.53763 -14.13246 -14.08151 -13.98676 -13.88160 -13.68622 -13.57551 -13.38970 -13.10890 -12.77402 -12.66066 -12.43627 -12.22445 -12.05953 -11.99178 -11.39632 -11.24963 -11.04068 -10.08166 -9.78365 -9.25760 -9.14691 -7.65216 -5.85865 0.20818 0.39158 0.90192 1.33686 1.91660 2.16636 2.27836 2.32122 2.37055 2.40088 2.44600 3.06950 3.16539 3.20410 3.27117 3.46179 3.59490 3.70980 3.74914 3.77115 3.80022 3.91194 4.05628 4.14950 4.24799 4.32036 4.35878 4.44961 4.47720 4.63622 4.70977 4.72645 4.81574 4.97896 5.09485 5.28393 5.40752 5.49381 5.76606 6.27404 6.34591 6.72280 7.29825 7.97635 9.37512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.185 4.185 3 C -0.149 4.149 4 C -0.130 4.130 5 C -0.174 4.174 6 C 0.136 3.864 7 O -0.367 6.367 8 C 0.199 3.801 9 H 0.032 0.968 10 C -0.569 4.569 11 H 0.072 0.928 12 C 0.094 3.906 13 N -0.858 5.858 14 Si 0.897 3.103 15 H -0.270 1.270 16 H -0.280 1.280 17 H -0.269 1.269 18 C -0.002 4.002 19 N -0.271 5.271 20 C -0.039 4.039 21 C -0.040 4.040 22 C -0.046 4.046 23 S 0.139 5.861 24 H 0.067 0.933 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.135 0.865 28 H 0.131 0.869 29 H 0.063 0.937 30 H 0.047 0.953 31 H 0.276 0.724 32 H 0.156 0.844 33 H 0.116 0.884 34 H 0.119 0.881 35 H 0.094 0.906 36 H 0.134 0.866 37 H 0.112 0.888 38 H 0.107 0.893 39 H 0.115 0.885 40 H 0.118 0.882 41 H 0.108 0.892 42 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.842 14.647 0.313 16.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.303 4.303 3 C -0.179 4.179 4 C -0.161 4.161 5 C -0.292 4.292 6 C 0.058 3.942 7 O -0.287 6.287 8 C 0.143 3.857 9 H 0.050 0.950 10 C -0.606 4.606 11 H 0.090 0.910 12 C -0.116 4.116 13 N -0.492 5.492 14 Si 0.723 3.277 15 H -0.195 1.195 16 H -0.205 1.205 17 H -0.194 1.194 18 C -0.121 4.121 19 N 0.070 4.930 20 C -0.180 4.180 21 C -0.182 4.182 22 C -0.187 4.187 23 S 0.404 5.596 24 H 0.086 0.914 25 H 0.094 0.906 26 H 0.094 0.906 27 H 0.153 0.847 28 H 0.149 0.851 29 H 0.082 0.918 30 H 0.065 0.935 31 H 0.086 0.914 32 H 0.174 0.826 33 H 0.134 0.866 34 H 0.137 0.863 35 H 0.113 0.887 36 H 0.152 0.848 37 H 0.130 0.870 38 H 0.126 0.874 39 H 0.134 0.866 40 H 0.136 0.864 41 H 0.126 0.874 42 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 6.326 13.101 0.654 14.563 hybrid contribution 0.318 0.402 -0.019 0.513 sum 6.645 13.503 0.636 15.063 Atomic orbital electron populations 1.20336 0.87965 1.03004 1.02916 1.24648 1.00164 0.96468 1.08985 1.19958 0.92875 0.99141 1.05912 1.19916 0.96060 0.95394 1.04722 1.24232 0.98464 0.96314 1.10178 1.20474 0.87939 0.99152 0.86658 1.88140 1.32793 1.84768 1.23011 1.19942 0.81377 0.95173 0.89213 0.95043 1.21201 1.36610 0.89233 1.13565 0.91024 1.24978 0.92520 0.99798 0.94333 1.69630 1.29740 1.36735 1.13104 0.86506 0.79036 0.83285 0.78851 1.19540 1.20451 1.19394 1.24941 1.06209 0.71616 1.09297 1.46391 1.14665 1.18436 1.13462 1.24303 0.83045 0.99075 1.11535 1.23985 1.01312 1.03899 0.89033 1.24037 0.99714 1.05718 0.89276 1.84644 0.95668 1.08286 1.70961 0.91434 0.90591 0.90562 0.84723 0.85073 0.91840 0.93490 0.91368 0.82608 0.86601 0.86269 0.88745 0.84818 0.86967 0.87395 0.86607 0.86377 0.87384 0.86771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.04 10.38 36.01 0.37 0.33 16 2 C -0.18 -0.46 6.51 -36.00 -0.23 -0.69 16 3 C -0.15 -0.22 10.05 -41.21 -0.41 -0.63 16 4 C -0.13 -0.10 10.05 -41.21 -0.41 -0.52 16 5 C -0.17 -0.44 6.14 -36.00 -0.22 -0.66 16 6 C 0.14 0.23 5.55 36.00 0.20 0.43 16 7 O -0.37 -0.84 6.44 -35.23 -0.23 -1.06 16 8 C 0.20 0.25 1.85 -27.89 -0.05 0.20 16 9 H 0.03 -0.04 5.49 -51.93 -0.28 -0.32 16 10 C -0.57 -4.18 8.89 -34.44 -0.31 -4.48 16 11 H 0.07 0.61 7.81 -52.49 -0.41 0.20 16 12 C 0.09 0.87 5.24 -17.82 -0.09 0.78 16 13 N -0.86 -8.00 10.95 55.43 0.61 -7.39 16 14 Si 0.90 8.58 29.54 -169.99 -5.02 3.55 16 15 H -0.27 -2.63 7.11 56.52 0.40 -2.22 16 16 H -0.28 -2.96 7.11 56.52 0.40 -2.55 16 17 H -0.27 -2.88 7.11 56.52 0.40 -2.48 16 18 C 0.00 0.01 3.53 -3.83 -0.01 -0.01 16 19 N -0.27 2.48 0.05 -395.62 -0.02 2.46 16 20 C -0.04 0.31 7.17 60.06 0.43 0.74 16 21 C -0.04 0.47 8.00 60.06 0.48 0.95 16 22 C -0.05 0.49 7.54 60.06 0.45 0.95 16 23 S 0.14 0.57 23.31 -107.50 -2.51 -1.93 16 24 H 0.07 0.03 8.14 -51.93 -0.42 -0.39 16 25 H 0.08 -0.05 8.14 -51.93 -0.42 -0.47 16 26 H 0.08 -0.03 8.14 -51.93 -0.42 -0.45 16 27 H 0.13 -0.05 8.06 -52.49 -0.42 -0.47 16 28 H 0.13 -0.30 8.06 -52.49 -0.42 -0.72 16 29 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.05 -0.08 8.08 -51.93 -0.42 -0.50 16 31 H 0.28 2.81 8.31 -40.82 -0.34 2.47 16 32 H 0.16 0.02 6.12 -51.93 -0.32 -0.30 16 33 H 0.12 -0.45 8.09 -51.93 -0.42 -0.87 16 34 H 0.12 -0.69 7.94 -51.93 -0.41 -1.10 16 35 H 0.09 -1.04 8.01 -51.93 -0.42 -1.46 16 36 H 0.13 -0.79 5.04 -51.93 -0.26 -1.05 16 37 H 0.11 -1.38 8.12 -51.93 -0.42 -1.80 16 38 H 0.11 -1.47 8.07 -51.93 -0.42 -1.89 16 39 H 0.12 -1.26 8.14 -51.93 -0.42 -1.69 16 40 H 0.12 -1.10 5.86 -51.93 -0.30 -1.40 16 41 H 0.11 -1.42 8.14 -51.93 -0.42 -1.85 16 42 H 0.11 -1.32 8.14 -51.93 -0.42 -1.75 16 LS Contribution 342.54 15.07 5.16 5.16 Total: 0.00 -16.20 342.54 -8.84 -25.04 By element: Atomic # 1 Polarization: -16.19 SS G_CDS: -7.03 Total: -23.22 kcal Atomic # 6 Polarization: -2.80 SS G_CDS: 0.19 Total: -2.61 kcal Atomic # 7 Polarization: -5.52 SS G_CDS: 0.59 Total: -4.93 kcal Atomic # 8 Polarization: -0.84 SS G_CDS: -0.23 Total: -1.06 kcal Atomic # 14 Polarization: 8.58 SS G_CDS: -5.02 Total: 3.55 kcal Atomic # 16 Polarization: 0.57 SS G_CDS: -2.51 Total: -1.93 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -16.20 -8.84 -25.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223190686.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.328 kcal (2) G-P(sol) polarization free energy of solvation -16.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds