Wall clock time and date at job start Tue Mar 31 2020 05:31:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33395 * 125.20000 * 2 1 4 4 C 1.38423 * 114.91830 * 179.86034 * 3 2 1 5 5 C 1.33388 * 114.92511 * 0.43137 * 4 3 2 6 6 C 1.50697 * 125.20743 * 179.79132 * 5 4 3 7 7 O 1.42896 * 109.47110 * 90.00509 * 6 5 4 8 8 C 1.42900 * 114.00057 * 180.02562 * 7 6 5 9 9 H 1.09002 * 109.47175 * 29.99415 * 8 7 6 10 10 C 1.50699 * 109.46926 * 269.99804 * 8 7 6 11 11 H 1.08001 * 120.00308 * 120.00192 * 10 8 7 12 12 C 1.37884 * 120.00115 * 300.00038 * 10 8 7 13 13 N 1.31516 * 119.99666 * 359.97438 * 12 10 8 14 14 Si 1.86796 * 120.00226 * 180.02562 * 12 10 8 15 15 H 1.48491 * 109.47375 * 59.99568 * 14 12 10 16 16 H 1.48498 * 109.47109 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.46885 * 299.99561 * 14 12 10 18 18 C 1.52995 * 109.47330 * 149.99727 * 8 7 6 19 19 N 1.46898 * 109.47401 * 293.29137 * 18 8 7 20 20 C 1.46901 * 109.47029 * 64.50144 * 19 18 8 21 21 C 1.46898 * 109.47418 * 184.50367 * 19 18 8 22 22 C 1.46898 * 109.47039 * 304.50382 * 19 18 8 23 23 S 1.75885 * 125.20561 * 180.31075 * 2 1 3 24 24 H 1.09004 * 109.46714 * 179.71021 * 1 2 3 25 25 H 1.08997 * 109.47251 * 59.71780 * 1 2 3 26 26 H 1.08994 * 109.47005 * 299.71627 * 1 2 3 27 27 H 1.07991 * 122.54095 * 0.02562 * 3 2 1 28 28 H 1.07999 * 122.53806 * 180.20555 * 4 3 2 29 29 H 1.09001 * 109.47013 * 210.00430 * 6 5 4 30 30 H 1.08998 * 109.46900 * 330.00531 * 6 5 4 31 31 H 0.96999 * 120.00212 * 180.02562 * 13 12 10 32 32 H 1.09005 * 109.46941 * 53.29263 * 18 8 7 33 33 H 1.09005 * 109.47266 * 173.29015 * 18 8 7 34 34 H 1.08998 * 109.47009 * 50.75048 * 20 19 18 35 35 H 1.08995 * 109.47232 * 170.75022 * 20 19 18 36 36 H 1.09006 * 109.46954 * 290.75061 * 20 19 18 37 37 H 1.08998 * 109.47345 * 59.99649 * 21 19 18 38 38 H 1.09002 * 109.47071 * 180.02562 * 21 19 18 39 39 H 1.09003 * 109.46889 * 299.99714 * 21 19 18 40 40 H 1.09000 * 109.47179 * 59.99658 * 22 19 18 41 41 H 1.09001 * 109.47628 * 179.97438 * 22 19 18 42 42 H 1.09006 * 109.47033 * 299.99774 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0900 0.0000 4 6 3.6379 0.8430 0.0031 5 6 3.9752 -0.4476 -0.0036 6 6 5.3861 -0.9769 -0.0065 7 8 5.8323 -1.1511 1.3398 8 6 7.1663 -1.6515 1.4498 9 1 7.7515 -1.3176 0.5929 10 6 7.1367 -3.1579 1.4816 11 1 7.6522 -3.7243 0.7201 12 6 6.4515 -3.8130 2.4828 13 7 5.8242 -3.1233 3.4103 14 14 6.4154 -5.6802 2.5225 15 1 7.8017 -6.1998 2.6372 16 1 5.6186 -6.1351 3.6901 17 1 5.7975 -6.1901 1.2721 18 6 7.8032 -1.1267 2.7381 19 7 7.9790 0.3285 2.6400 20 6 6.6632 0.9758 2.5531 21 6 8.6877 0.8175 3.8302 22 6 8.7618 0.6472 1.4385 23 16 2.5210 -1.4371 -0.0078 24 1 -0.3633 -1.0277 -0.0052 25 1 -0.3633 0.5182 -0.8874 26 1 -0.3633 0.5094 0.8925 27 1 1.8669 2.0895 0.0004 28 1 4.3720 1.6351 0.0067 29 1 5.4136 -1.9351 -0.5253 30 1 6.0388 -0.2685 -0.5168 31 1 5.3425 -3.5841 4.1149 32 1 7.1559 -1.3583 3.5840 33 1 8.7740 -1.6009 2.8829 34 1 6.0247 0.6105 3.3575 35 1 6.7825 2.0553 2.6457 36 1 6.2060 0.7419 1.5916 37 1 9.6640 0.3371 3.8947 38 1 8.8176 1.8973 3.7575 39 1 8.1068 0.5810 4.7217 40 1 8.2360 0.2844 0.5554 41 1 8.8919 1.7270 1.3654 42 1 9.7382 0.1669 1.5030 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001223190686.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:38 Heat of formation + Delta-G solvation = 87.193586 kcal Electronic energy + Delta-G solvation = -21600.081112 eV Core-core repulsion = 18597.573370 eV Total energy + Delta-G solvation = -3002.507742 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 284.143 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.60052 -39.16639 -38.10364 -35.05784 -33.23703 -31.41519 -29.53172 -29.40741 -29.02130 -27.75942 -25.24509 -24.49668 -23.53376 -22.42824 -19.77158 -18.97444 -18.10525 -18.03020 -17.69305 -17.35202 -16.86387 -16.46933 -16.12536 -15.63444 -14.80243 -14.76118 -14.47251 -14.07444 -13.94915 -13.78594 -13.39349 -13.37989 -13.24985 -13.16410 -13.10479 -12.97420 -12.95431 -12.80212 -12.72126 -12.67989 -12.46068 -12.31363 -11.85614 -11.50987 -11.19976 -10.79839 -10.00200 -9.41124 -9.37657 -8.33312 -6.48300 0.07589 0.72777 1.08898 1.19570 1.31365 1.40223 1.47058 1.84707 2.29373 2.88831 2.98299 3.14318 3.19782 3.44291 3.98945 4.03240 4.07130 4.21834 4.29712 4.34090 4.39123 4.40896 4.43102 4.50082 4.53560 4.54663 4.69589 4.71765 4.74121 4.81790 4.83759 4.85325 4.88651 5.06903 5.10887 5.29963 5.35014 5.38983 5.61424 5.71084 5.93234 6.38539 6.83621 7.33464 8.64983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.186 4.186 3 C -0.150 4.150 4 C -0.113 4.113 5 C -0.181 4.181 6 C 0.137 3.863 7 O -0.372 6.372 8 C 0.194 3.806 9 H 0.062 0.938 10 C -0.572 4.572 11 H 0.051 0.949 12 C 0.074 3.926 13 N -0.863 5.863 14 Si 0.907 3.093 15 H -0.270 1.270 16 H -0.296 1.296 17 H -0.292 1.292 18 C 0.018 3.982 19 N -0.258 5.258 20 C -0.038 4.038 21 C -0.042 4.042 22 C -0.052 4.052 23 S 0.043 5.957 24 H 0.060 0.940 25 H 0.089 0.911 26 H 0.086 0.914 27 H 0.161 0.839 28 H 0.173 0.827 29 H 0.028 0.972 30 H 0.091 0.909 31 H 0.263 0.737 32 H 0.124 0.876 33 H 0.126 0.874 34 H 0.091 0.909 35 H 0.137 0.863 36 H 0.115 0.885 37 H 0.122 0.878 38 H 0.142 0.858 39 H 0.104 0.896 40 H 0.103 0.897 41 H 0.145 0.855 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.642 19.051 0.064 20.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.304 4.304 3 C -0.180 4.180 4 C -0.144 4.144 5 C -0.298 4.298 6 C 0.058 3.942 7 O -0.292 6.292 8 C 0.138 3.862 9 H 0.080 0.920 10 C -0.610 4.610 11 H 0.070 0.930 12 C -0.133 4.133 13 N -0.499 5.499 14 Si 0.736 3.264 15 H -0.195 1.195 16 H -0.222 1.222 17 H -0.218 1.218 18 C -0.103 4.103 19 N 0.085 4.915 20 C -0.179 4.179 21 C -0.183 4.183 22 C -0.193 4.193 23 S 0.307 5.693 24 H 0.079 0.921 25 H 0.108 0.892 26 H 0.105 0.895 27 H 0.178 0.822 28 H 0.190 0.810 29 H 0.046 0.954 30 H 0.109 0.891 31 H 0.073 0.927 32 H 0.142 0.858 33 H 0.144 0.856 34 H 0.109 0.891 35 H 0.155 0.845 36 H 0.134 0.866 37 H 0.141 0.859 38 H 0.160 0.840 39 H 0.123 0.877 40 H 0.122 0.878 41 H 0.163 0.837 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 8.144 17.513 0.402 19.318 hybrid contribution -0.223 -0.904 -0.031 0.932 sum 7.921 16.609 0.372 18.405 Atomic orbital electron populations 1.20408 0.86867 1.02988 1.04016 1.24877 1.00864 0.95293 1.09336 1.20371 0.93194 0.99796 1.04643 1.20322 0.96659 0.95410 1.01997 1.24316 0.97488 0.96393 1.11644 1.20532 0.88580 0.98543 0.86505 1.88158 1.33251 1.84458 1.23336 1.19991 0.81666 0.91799 0.92764 0.92030 1.21569 1.34628 0.93249 1.11537 0.93026 1.25083 0.93929 0.98829 0.95473 1.69717 1.31191 1.35548 1.13401 0.86444 0.78236 0.84927 0.76793 1.19548 1.22210 1.21798 1.24069 1.05455 0.75854 1.04950 1.45976 1.15194 1.14707 1.15657 1.24237 0.83019 1.01400 1.09270 1.24174 1.01003 1.05917 0.87189 1.24268 0.99413 1.08255 0.87350 1.84965 0.99236 1.11886 1.73195 0.92113 0.89213 0.89509 0.82160 0.81016 0.95381 0.89110 0.92716 0.85830 0.85644 0.89057 0.84482 0.86638 0.85912 0.84018 0.87720 0.87828 0.83715 0.85670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.11 10.38 71.24 0.74 0.63 16 2 C -0.19 -1.01 6.51 24.59 0.16 -0.85 16 3 C -0.15 -0.21 10.05 21.22 0.21 0.00 16 4 C -0.11 0.03 10.05 21.22 0.21 0.24 16 5 C -0.18 -0.98 6.14 24.59 0.15 -0.83 16 6 C 0.14 0.51 5.55 71.23 0.40 0.90 16 7 O -0.37 -1.91 6.44 -148.98 -0.96 -2.87 16 8 C 0.19 0.52 1.85 29.85 0.06 0.58 16 9 H 0.06 -0.22 5.49 -2.39 -0.01 -0.24 16 10 C -0.57 -9.54 8.89 25.60 0.23 -9.31 16 11 H 0.05 1.01 7.81 -2.91 -0.02 0.99 16 12 C 0.07 1.59 5.24 84.66 0.44 2.03 16 13 N -0.86 -18.57 10.95 21.45 0.23 -18.34 16 14 Si 0.91 20.49 29.54 68.60 2.03 22.51 16 15 H -0.27 -5.94 7.11 99.48 0.71 -5.23 16 16 H -0.30 -7.38 7.11 99.48 0.71 -6.67 16 17 H -0.29 -7.49 7.11 99.48 0.71 -6.78 16 18 C 0.02 -0.12 3.53 86.30 0.30 0.19 16 19 N -0.26 5.33 0.05 ******* -0.07 5.26 16 20 C -0.04 0.69 7.17 127.69 0.92 1.61 16 21 C -0.04 1.11 8.00 127.69 1.02 2.13 16 22 C -0.05 1.32 7.54 127.69 0.96 2.28 16 23 S 0.04 0.47 23.31 -56.49 -1.32 -0.85 16 24 H 0.06 0.15 8.14 -2.39 -0.02 0.13 16 25 H 0.09 -0.15 8.14 -2.39 -0.02 -0.17 16 26 H 0.09 -0.08 8.14 -2.39 -0.02 -0.10 16 27 H 0.16 -0.60 8.06 -2.92 -0.02 -0.62 16 28 H 0.17 -1.51 8.06 -2.91 -0.02 -1.53 16 29 H 0.03 0.30 8.14 -2.39 -0.02 0.28 16 30 H 0.09 -0.49 8.08 -2.39 -0.02 -0.51 16 31 H 0.26 6.26 8.31 -92.71 -0.77 5.49 16 32 H 0.12 0.16 6.12 -2.38 -0.01 0.15 16 33 H 0.13 -1.07 8.09 -2.38 -0.02 -1.09 16 34 H 0.09 -1.07 7.94 -2.39 -0.02 -1.09 16 35 H 0.14 -3.64 8.01 -2.39 -0.02 -3.66 16 36 H 0.12 -1.62 5.04 -2.38 -0.01 -1.63 16 37 H 0.12 -3.39 8.12 -2.39 -0.02 -3.41 16 38 H 0.14 -4.55 8.07 -2.39 -0.02 -4.57 16 39 H 0.10 -2.42 8.14 -2.39 -0.02 -2.44 16 40 H 0.10 -2.26 5.86 -2.39 -0.01 -2.27 16 41 H 0.14 -4.62 8.14 -2.39 -0.02 -4.64 16 42 H 0.12 -3.36 8.14 -2.38 -0.02 -3.38 16 Total: 0.00 -44.38 342.54 6.69 -37.68 By element: Atomic # 1 Polarization: -43.99 SS G_CDS: 0.98 Total: -43.01 kcal Atomic # 6 Polarization: -6.20 SS G_CDS: 5.80 Total: -0.40 kcal Atomic # 7 Polarization: -13.24 SS G_CDS: 0.17 Total: -13.08 kcal Atomic # 8 Polarization: -1.91 SS G_CDS: -0.96 Total: -2.87 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: 2.03 Total: 22.51 kcal Atomic # 16 Polarization: 0.47 SS G_CDS: -1.32 Total: -0.85 kcal Total: -44.38 6.69 -37.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223190686.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.879 kcal (2) G-P(sol) polarization free energy of solvation -44.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds